NO18G01310, NO18G01310 (gene) Nannochloropsis oceanica

Overview
NameNO18G01310
Unique NameNO18G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3249
Alignment locationchr18:443122..446370 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:443122..446370 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01310 vs. NCBI_GenBank
Match: XP_005855980.1 (hypothetical protein NGA_0524500 [Nannochloropsis gaditana CCMP526] >EKU20389.1 hypothetical protein NGA_0524500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 693.0 bits (1787), Expect = 1.500e-195
Identity = 425/853 (49.82%), Postives = 514/853 (60.26%), Query Frame = 0 
Query:  247 REKATEGIKNTAKIISEGWSNINWTAPSGLAARARTLGGNTWIAVRNKIGALPSKDKTAAVGGRTRRKKKG-VGLGKIGNRSKMPKRSPREXXXXXXXXXXXXXXXXXXXXXXXVNKVFSLPSLLQRIDPSAYTASMWNQMM--ASGKAGREGEREGRNDLLPPPVTERPYAFDDLVKFPAGPAEAWDLFVDDTRHFFDSVYKVMAPASAMPKPGPSRPQVGGIRPKAEKVKQGPLNAVPLVLRQKMGSALAPWWP---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQDLRGRVKNMIEETSGAPSGAEYYALLEEEEEVLDVSKEKERGLPISRRATKHQQQKKSQ-KNLPVPLQAPRLVDRLDERPRGI-SSGATFDALSTPAGRGVGE--TMDAWVPLPPFPSQPPMEDEYWPAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVERGVVSPWRRGLPDWLQRVSLTRLLVRKPTPERMLEIIRRRQQVRRMPRKMDDVFLRTVSRKLQGNRVKIRAFQLQTDRYRNSLLSAQAYVDAVVLLFGTSKDAEEVLWPLTRWLPEASKRRGLAEECKARRRARL-GLSVGNVRRGGAKDRGGRKEEKAGTMAMVGDVRKAAVLATTAWLARVGTTVSGWFTGGMRGMGAFGRGLAQVLSSNSTLIELSFETGKENYEEEVGKDSSEVWREGEGVDPAVLRALAGFERELEWRGQQAASAGGKDDPMARIVDILGDKNAAYFQQRLELYLRGGLPGMELYRALKRLCLANEMRLDLVMRQLREESMREDQKWKSKNEKLAALLRIHEGQRKVTW 1083
            R  +  G+K T K  ++GWS     +    AARA+  G   W  +R+K+  L  K     +G R ++K+KG  G G+ G+      RSPRE                         K F LPSLLQRIDPSAY+A +W Q +    G+ GR G  EG + +   P + RP  FDDLV+FP GPAEAWDLFV D RH  DS+Y+++APA+A+PK GPSRPQVG  RPKA +VKQGPL A PLVLRQK                                                         WQ LRGRV+ MIEE++GAPSGAEYYA+     E  +      R  P SR   + Q+++ S+ +NLPVPL+APRLVDRLDERPRGI ++G++       A     +   MDA VPLPPFPS+PPMEDEYWP P                                                    ++   V+PWRRGLP+WL+RVSLTRLLVRKPTPERMLE+IRRRQQVRRMPRKMDD FLRTVSRKLQGNR++IR+FQLQTDRYRNSLLSA AYVDAVV LFG++K+AEEVL PLTRWLPEASKRRGL++E  ARRRARL GL     R+GG     G      GT A++ +  +  + A+TAW+AR+   VS    G  RG+   GR L  +    STLIELSFE GKE  E + GK  S        +D   + AL   EREL+ RGQ   + GG DDPMARI DILGD+NAAYFQQRL+LY+RGGL GM+LYRALKRLCLANEMRLDLVMRQLREES+R D++W+S+NE+L ALLRIHEGQRK+ W
Sbjct:   57 RRGSAGGVKKTMKAFADGWS----VSAGAWAARAKASGLGAWSGLRSKVSTLLPK-SMERIGARMKKKRKGAAGRGRPGS-----ARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGA-RPKAARVKQGPLYATPLVLRQKKAXXXXXXXXXXXXPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVPLPPFPSRPPMEDEYWPVP------------------------ASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAG------GTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMS--------IDDPTVLALTELERELKGRGQVGGN-GGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW 859
[Close]
BLAST of NO18G01310 vs. NCBI_GenBank
Match: EWM23346.1 (hypothetical protein Naga_100057g2 [Nannochloropsis gaditana])

HSP 1 Score: 692.2 bits (1785), Expect = 2.600e-195
Identity = 426/854 (49.88%), Postives = 514/854 (60.19%), Query Frame = 0 
Query:  246 RREKATEGIKNTAKIISEGWSNINWTAPSGLAARARTLGGNTWIAVRNKIGALPSKDKTAAVGGRTRRKKKG-VGLGKIGNRSKMPKRSPREXXXXXXXXXXXXXXXXXXXXXXXVNKVFSLPSLLQRIDPSAYTASMWNQMM--ASGKAGREGEREGRNDLLPPPVTERPYAFDDLVKFPAGPAEAWDLFVDDTRHFFDSVYKVMAPASAMPKPGPSRPQVGGIRPKAEKVKQGPLNAVPLVLRQKMGSALAPWWP---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQDLRGRVKNMIEETSGAPSGAEYYALLEEEEEVLDVSKEKERGLPISRRATKHQQQKKSQ-KNLPVPLQAPRLVDRLDERPRGI-SSGATFDALSTPAGRGVGE--TMDAWVPLPPFPSQPPMEDEYWPAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVERGVVSPWRRGLPDWLQRVSLTRLLVRKPTPERMLEIIRRRQQVRRMPRKMDDVFLRTVSRKLQGNRVKIRAFQLQTDRYRNSLLSAQAYVDAVVLLFGTSKDAEEVLWPLTRWLPEASKRRGLAEECKARRRARL-GLSVGNVRRGGAKDRGGRKEEKAGTMAMVGDVRKAAVLATTAWLARVGTTVSGWFTGGMRGMGAFGRGLAQVLSSNSTLIELSFETGKENYEEEVGKDSSEVWREGEGVDPAVLRALAGFERELEWRGQQAASAGGKDDPMARIVDILGDKNAAYFQQRLELYLRGGLPGMELYRALKRLCLANEMRLDLVMRQLREESMREDQKWKSKNEKLAALLRIHEGQRKVTW 1083
            RR  A  G+K T K  ++GWS     +    AARA+  G   W  +R+K+  L  K     +G R ++K+KG  G G+ G+      RSPRE                         K F LPSLLQRIDPSAY+A +W Q +    G+ GR G  EG + +   P + RP  FDDLV+FP GPAEAWDLFV D RH  DS+Y+++APA+A+PK GPSRPQVG  RPKA +VKQGPL A PLVLRQK                                                         WQ LRGRV+ MIEE++GAPSGAEYYA+     E  +      R  P SR   + Q+++ S+ +NLPVPL+APRLVDRLDERPRGI ++G++       A     +   MDA V LPPFPS+PPMEDEYWP P                                                    ++   V+PWRRGLP+WL+RVSLTRLLVRKPTPERMLE+IRRRQQVRRMPRKMDD FLRTVSRKLQGNR++IR+FQLQTDRYRNSLLSA AYVDAVV LFG++K+AEEVL PLTRWLPEASKRRGL++E  ARRRARL GL     R+GG     G      GT A++ +  +  + A+TAW+AR+   VS    G  RG+   GR L  +    STLIELSFE GKE  E + GK  S        +D   + AL   EREL+ RGQ   + GG DDPMARI DILGD+NAAYFQQRL+LY+RGGL GM+LYRALKRLCLANEMRLDLVMRQLREES+R D++W+S+NE+L ALLRIHEGQRK+ W
Sbjct:  231 RRGSAGGGVKKTMKAFADGWS----VSAGAWAARAKASGLGAWSGLRSKVSTLLPK-SMERIGARMKKKRKGAAGRGRPGS-----ARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGA-RPKAARVKQGPLYATPLVLRQKKAXXXXXXXXXXXXPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVALPPFPSRPPMEDEYWPVP------------------------ASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAG------GTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMS--------IDDPTVLALTELERELKGRGQVGGN-GGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW 1034
The following BLAST results are available for this feature:
BLAST of NO18G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855980.11.500e-19549.82hypothetical protein NGA_0524500 [Nannochloropsis ... [more]
EWM23346.12.600e-19549.88hypothetical protein Naga_100057g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003987NSK003987Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01310.1NO18G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301596gene_9058Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g2gene7110Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01310.1NO18G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01310 ID=NO18G01310|Name=NO18G01310|organism=Nannochloropsis oceanica|type=gene|length=3249bp
ATGGACATGGTCCGAAGGAGAAGACGAACGAGACCCCACGACACGTTAAA
ACCCGTGGCTCGCCTCCTGCCTCTCGCCCTTGCCCTAGTTGTCCCACCCT
TGCTCCTCCAAGTGGACAGCATCGCCGCCTTCACACCCCCCTGGAGTCGT
GCTCTTTCCTTTCCTCGCAGCCCGCCCCTTCCTCAAGTCTCGGTTCAGGA
AGAGGAGCGCATAATCAGTACCAAAGCTACTTTGCCTCCAGCGCCCCTCT
CCTTTGCCCCGCTGCCACCCCTCCGGCAGCAGCTGCACCACCACCACCAC
CAACGGCAGCAACAGGATCAGCAGCTGCGGCAGCAGTATGAACATCAGCA
GCAAGAAGAGAAGGAACTCCATGACTCCATCTTGGACACTGACATCGAGG
CCTTGGCCGCGGCAGCTGTCCAATTCAAGAAGCCCAACAACACGTCCTCT
TCCTCTTCCTCTTCCATTGCTGTGGCGGCAACCTCGACGTCCCATTCCCT
ACCCTCCCTCGTCAATCGCACAACCATCTGGCTGGGTGATGTGTGGGGCC
GGACGACAAGAGCAGTGGCTTCCTCACGCGTATTGCTATCCCCAGCAAAG
GAGGGAAATGGAGCTGCAGGGGTCAGCATTATATCTAAAGACGAACGCGG
GCGGGCAAGGAGACGGGAAGAGGAAGAAGAAAGAGAAGCATTCGCCCGAC
GAAAGCGTGCTCGAGAACAGGGACAGGGGCTTACCCGGCGGGAGAAAGCG
ACAGAGGGGATTAAGAATACAGCCAAGATAATTTCTGAGGGATGGAGTAA
CATCAACTGGACCGCACCAAGTGGGCTGGCTGCACGGGCAAGGACTTTGG
GAGGAAATACATGGATAGCAGTACGTAACAAGATAGGGGCTCTACCATCG
AAAGATAAGACTGCAGCTGTGGGGGGGAGGACAAGAAGGAAAAAGAAGGG
GGTCGGTCTCGGCAAGATTGGGAATCGAAGTAAGATGCCGAAGCGGTCGC
CCAGGGAGCAGTTGCTGGAGCAGCAGCAGCAGAAGCGTACGGATATGCTA
CCAAGTAGTAGCAGTAGCAGTAGTAGTGTTAACAAGGTATTTTCTCTCCC
ATCCCTGCTGCAGCGCATTGACCCCTCCGCATACACCGCCAGCATGTGGA
ACCAAATGATGGCCTCCGGGAAAGCAGGGAGGGAGGGCGAGCGGGAAGGA
AGGAATGATCTCCTTCCTCCTCCTGTAACGGAGCGTCCGTATGCCTTTGA
TGACCTTGTAAAATTTCCCGCAGGGCCGGCGGAGGCTTGGGATTTATTCG
TCGACGACACGCGTCACTTTTTCGACTCCGTGTATAAGGTCATGGCACCC
GCTTCGGCCATGCCAAAGCCAGGCCCAAGCCGGCCACAGGTGGGAGGGAT
AAGACCTAAGGCTGAAAAGGTGAAGCAAGGCCCATTGAATGCTGTGCCTT
TAGTATTACGACAGAAGATGGGGAGTGCATTGGCGCCTTGGTGGCCGCCG
CCACCGCCGCTGCCGCTGCAGCAGGAGCAGGAGCAGGGGGAAGAGGGGAT
GGAACCGGTGGTGGACGAAACAGAAGATAAAGAGAGAGAGGAGGAGGATG
AGGAGGATAGGTGGCAGGACTTGCGTGGCCGAGTAAAGAATATGATTGAA
GAGACGTCGGGTGCCCCTTCGGGAGCTGAATATTACGCTCTCCTGGAGGA
GGAGGAGGAGGTGTTGGACGTGTCGAAGGAGAAAGAGAGAGGGCTGCCAA
TTTCGCGGAGGGCCACTAAGCATCAGCAGCAGAAAAAAAGCCAGAAGAAT
CTCCCTGTGCCTTTACAGGCTCCCCGCTTGGTAGACAGGCTCGATGAGCG
CCCTCGCGGGATCTCCTCTGGCGCCACCTTTGACGCTCTATCCACGCCTG
CTGGTCGTGGGGTGGGGGAGACGATGGACGCGTGGGTGCCCTTGCCACCC
TTTCCCTCTCAACCGCCTATGGAGGATGAGTACTGGCCTGCCCCCTTGTC
ATCTTCCTCATCCTCCTCCTCCTCTTTCTTGTCTTCTTCCACTTATCGGG
CTTCGTCTGCCTTCGATGGCAACGAAGAAGAACGGGATGAAGATGGCATT
GACTGGGATGATGACGGGGATGAGGAGGATGAGGAGGAAGAGGAAGGAGG
GGTGGAAAGAGGGGTAGTCTCCCCTTGGCGACGGGGGCTGCCTGATTGGC
TCCAGCGCGTGAGCCTGACGCGACTCTTAGTCCGCAAACCCACCCCGGAA
AGGATGTTGGAAATTATTCGGAGGCGTCAGCAAGTGAGGCGGATGCCTCG
GAAGATGGACGATGTCTTTTTAAGGACAGTTTCAAGGAAGCTGCAAGGGA
ACAGGGTGAAGATTCGAGCGTTTCAGTTACAGACTGACAGGTACCGGAAC
TCGCTCTTGTCGGCCCAGGCGTATGTAGACGCGGTGGTCCTGTTGTTTGG
CACGAGTAAAGACGCAGAAGAGGTGTTGTGGCCTTTGACGAGGTGGTTGC
CCGAGGCGTCGAAGAGGAGGGGCCTAGCAGAAGAGTGCAAGGCGCGACGA
CGAGCTAGGTTAGGATTATCTGTGGGGAATGTAAGGAGGGGGGGAGCGAA
GGATAGGGGTGGAAGAAAGGAGGAAAAGGCGGGGACGATGGCTATGGTAG
GGGATGTGAGGAAGGCTGCTGTTCTAGCTACGACGGCCTGGCTGGCTAGA
GTTGGGACGACGGTGTCCGGCTGGTTTACAGGAGGGATGAGGGGGATGGG
TGCGTTTGGGAGGGGCTTGGCCCAGGTGTTGAGCAGTAATAGCACGCTGA
TTGAATTGTCATTTGAGACAGGGAAGGAGAACTATGAAGAGGAAGTGGGA
AAGGATTCAAGCGAGGTGTGGAGGGAGGGGGAGGGTGTAGATCCGGCGGT
GCTGCGGGCGCTGGCGGGGTTTGAGAGGGAGTTGGAGTGGAGGGGGCAGC
AGGCGGCGAGTGCGGGAGGTAAGGATGACCCCATGGCGCGTATCGTGGAT
ATCTTGGGGGACAAAAATGCGGCCTATTTCCAGCAGAGGCTTGAGTTGTA
TCTGAGGGGGGGGTTACCGGGTATGGAGTTGTACCGGGCTTTGAAGAGGT
TGTGTTTGGCGAACGAGATGAGGTTGGATCTGGTGATGCGGCAGCTGAGG
GAGGAGTCGATGAGGGAGGATCAAAAGTGGAAGAGCAAGAATGAGAAGTT
GGCGGCCTTGTTGAGGATTCATGAGGGCCAGCGGAAGGTAACTTGGTAG
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protein sequence of NO18G01310.1

>NO18G01310.1-protein ID=NO18G01310.1-protein|Name=NO18G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1083bp
MDMVRRRRRTRPHDTLKPVARLLPLALALVVPPLLLQVDSIAAFTPPWSR
ALSFPRSPPLPQVSVQEEERIISTKATLPPAPLSFAPLPPLRQQLHHHHH
QRQQQDQQLRQQYEHQQQEEKELHDSILDTDIEALAAAAVQFKKPNNTSS
SSSSSIAVAATSTSHSLPSLVNRTTIWLGDVWGRTTRAVASSRVLLSPAK
EGNGAAGVSIISKDERGRARRREEEEEREAFARRKRAREQGQGLTRREKA
TEGIKNTAKIISEGWSNINWTAPSGLAARARTLGGNTWIAVRNKIGALPS
KDKTAAVGGRTRRKKKGVGLGKIGNRSKMPKRSPREQLLEQQQQKRTDML
PSSSSSSSSVNKVFSLPSLLQRIDPSAYTASMWNQMMASGKAGREGEREG
RNDLLPPPVTERPYAFDDLVKFPAGPAEAWDLFVDDTRHFFDSVYKVMAP
ASAMPKPGPSRPQVGGIRPKAEKVKQGPLNAVPLVLRQKMGSALAPWWPP
PPPLPLQQEQEQGEEGMEPVVDETEDKEREEEDEEDRWQDLRGRVKNMIE
ETSGAPSGAEYYALLEEEEEVLDVSKEKERGLPISRRATKHQQQKKSQKN
LPVPLQAPRLVDRLDERPRGISSGATFDALSTPAGRGVGETMDAWVPLPP
FPSQPPMEDEYWPAPLSSSSSSSSSFLSSSTYRASSAFDGNEEERDEDGI
DWDDDGDEEDEEEEEGGVERGVVSPWRRGLPDWLQRVSLTRLLVRKPTPE
RMLEIIRRRQQVRRMPRKMDDVFLRTVSRKLQGNRVKIRAFQLQTDRYRN
SLLSAQAYVDAVVLLFGTSKDAEEVLWPLTRWLPEASKRRGLAEECKARR
RARLGLSVGNVRRGGAKDRGGRKEEKAGTMAMVGDVRKAAVLATTAWLAR
VGTTVSGWFTGGMRGMGAFGRGLAQVLSSNSTLIELSFETGKENYEEEVG
KDSSEVWREGEGVDPAVLRALAGFERELEWRGQQAASAGGKDDPMARIVD
ILGDKNAAYFQQRLELYLRGGLPGMELYRALKRLCLANEMRLDLVMRQLR
EESMREDQKWKSKNEKLAALLRIHEGQRKVTW*
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Synonyms
Publications