NO18G01300, NO18G01300 (gene) Nannochloropsis oceanica

Overview
NameNO18G01300
Unique NameNO18G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr18:441340..442494 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:441340..442494 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01300 vs. NCBI_GenBank
Match: XP_005855978.1 (hypothetical protein NGA_0524300 [Nannochloropsis gaditana CCMP526] >EKU20387.1 hypothetical protein NGA_0524300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 461.5 bits (1186), Expect = 1.800e-126
Identity = 219/264 (82.95%), Postives = 245/264 (92.80%), Query Frame = 0 
Query:    1 MRLFISMVLAGLSLAAAGCLDFVDQSNIPTCYKGTFLCLGMEDDNCHLGENQLVMHVTDLGRDRRTRQAQVGLKLENEGMAASTLETVWVEDEYNLLSSQSAFAPLINSAGVRYHVIDNATVFSDALAHHVPFDQHFVASCVPEQKDLSLLRSMRRQAQPLDCVSNSGADNKHSSVTLAFETTCSIDDVERALKLGLIRVGVQMGGFAKKPVRKGFITCQDMLEVLPYDEDEHDDSIDSFDFDEDEFWEEEWDGPRAAQKKRNR 265
            MR+ IS+VLAGLSLAA+ CLDFVD SNIPTCY+GTFLCLG EDDNCHLGENQLVMHV D+GRDRRTRQ Q+GLK+ENEGMA ST+ET+WVEDEYNL S  S F+PLINSA VRYH+IDNATVF+DALAHHVPFDQHFVASCVPEQKD+S+LRSM RQA+ +DCV NSGA+NKH+ VT+AFETTCS++DVE ALKLGLIRVGVQ+ GFAKKPVRKGFITCQDMLEVLP+DE++HDDSI+SFDFDEDEFWEEEWD PRAAQKKRNR
Sbjct:    1 MRVLISIVLAGLSLAASSCLDFVDVSNIPTCYRGTFLCLGAEDDNCHLGENQLVMHVLDMGRDRRTRQPQIGLKMENEGMAKSTIETIWVEDEYNLFSGLSPFSPLINSADVRYHLIDNATVFTDALAHHVPFDQHFVASCVPEQKDMSILRSMHRQAKTVDCVQNSGAENKHNFVTMAFETTCSVEDVEMALKLGLIRVGVQLSGFAKKPVRKGFITCQDMLEVLPFDEEDHDDSIESFDFDEDEFWEEEWDEPRAAQKKRNR 264
[Close]
BLAST of NO18G01300 vs. NCBI_GenBank
Match: EWM23343.1 (hypothetical protein Naga_100057g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 4.900e-71
Identity = 130/153 (84.97%), Postives = 146/153 (95.42%), Query Frame = 0 
Query:  112 VRYHVIDNATVFSDALAHHVPFDQHFVASCVPEQKDLSLLRSMRRQAQPLDCVSNSGADNKHSSVTLAFETTCSIDDVERALKLGLIRVGVQMGGFAKKPVRKGFITCQDMLEVLPYDEDEHDDSIDSFDFDEDEFWEEEWDGPRAAQKKRNR 265
            VRYH+IDNATVF+DALAHHVPFDQHFVASCVPEQKD+S+LRSM RQA+ +DCV NSGA+NKH+ VT+AFETTCS++DVE ALKLGLIRVGVQ+ GFAKKPVRKGFITCQDMLEVLP+DE++HDDSI+SFDFDEDEFWEEEWD PRAAQKKRNR
Sbjct:    1 VRYHLIDNATVFTDALAHHVPFDQHFVASCVPEQKDMSILRSMHRQAKTVDCVQNSGAENKHNFVTMAFETTCSVEDVEMALKLGLIRVGVQLSGFAKKPVRKGFITCQDMLEVLPFDEEDHDDSIESFDFDEDEFWEEEWDEPRAAQKKRNR 153
The following BLAST results are available for this feature:
BLAST of NO18G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855978.11.800e-12682.95hypothetical protein NGA_0524300 [Nannochloropsis ... [more]
EWM23343.14.900e-7184.97hypothetical protein Naga_100057g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003986NSK003986Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01300.1NO18G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607941gene_9057Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g1gene7111Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01300.1NO18G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01300 ID=NO18G01300|Name=NO18G01300|organism=Nannochloropsis oceanica|type=gene|length=1155bp
ATGCGCCTGTTTATCTCAATGGgtaagtgcatatcttagtttcatcgtac
ctctcacatgtattcaagcgtgctcgcctgctatatgtgcgtatggccct
gcaaaggcaccggtttccttctcttcttgcaccgatcgatatcactgcgc
cgcctgcatctctatcacatcatgcacgaccctcctgttcaacggggagc
gtcatgtatgccctctcgccagctctctacatggacatttgtccctgtcg
acgcattgtgcgcacaagttccaatttattcccttgctagctctgtttat
gtcactttgcgtataagtcctagtgtcatgagccgccccaactcagatct
ctcccttctcatcctcttactctgtatagTGTTGGCGGGCTTGAGCCTGG
CCGCGGCCGGCTGCTTGGATTTCGTGGATCAATCCAATATCCCGACCTGC
TACAAGGGCACTTTCCTTTGCTTGGGCATGGAGGACGACAACTGCCACCT
GGGGGAGAATCAACTGGTCATGCACGTCACGGACTTAGGGCGTGATAGAA
GAACACGCCAGGCGCAGGTGGGGCTGAAGTTGGAGAATGAGGGAATGGCT
GCGAGTACTTTGGAGACGGTGTGGGTGGAGGACGAGTATAACCTATTGAG
CTCGCAGTCGGCATTTGCACCCTTGATCAACTCGGCGGGGGTTCGATACC
ATGTGATTGACAATGCGACTGTGTTCAGTGATGCCTTGGCGCACCATGTG
CCTTTTGACCAGCACTTCGTTGCCTCTTGTGTGCCCGAACAAAAGGATTT
GTCTTTGTTGCGGAGCATGCGGAGACAGGCGCAGCCGTTGGATTGTGTGT
CAAACAGCGGGGCGGACAATAAGCATAGCTCGGTGACGCTGGCATTTGAG
ACGACCTGTTCTATTGACGACGTGGAGCGGGCGTTAAAATTGGGGCTGAT
CCGGGTTGGGGTGCAAATGGGGGGATTTGCGAAGAAGCCCGTAAGGAAGG
GATTTATCACTTGCCAGGACATGCTGGAAGTACTGCCGTATGACGAGGAT
GAGCACGATGACTCCATTGATAGCTTTGACTTTGATGAGGATGAGTTTTG
GGAGGAGGAATGGGACGGGCCACGGGCGGCACAGAAGAAAAGAAACCGGC
CGTAG
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protein sequence of NO18G01300.1

>NO18G01300.1-protein ID=NO18G01300.1-protein|Name=NO18G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRLFISMVLAGLSLAAAGCLDFVDQSNIPTCYKGTFLCLGMEDDNCHLGE
NQLVMHVTDLGRDRRTRQAQVGLKLENEGMAASTLETVWVEDEYNLLSSQ
SAFAPLINSAGVRYHVIDNATVFSDALAHHVPFDQHFVASCVPEQKDLSL
LRSMRRQAQPLDCVSNSGADNKHSSVTLAFETTCSIDDVERALKLGLIRV
GVQMGGFAKKPVRKGFITCQDMLEVLPYDEDEHDDSIDSFDFDEDEFWEE
EWDGPRAAQKKRNRP*
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Synonyms
Publications