NO18G01290, NO18G01290 (gene) Nannochloropsis oceanica

Overview
NameNO18G01290
Unique NameNO18G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1285
Alignment locationchr18:438764..440048 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, SWIM-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:438764..440048 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Homology
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BLAST of NO18G01290 vs. NCBI_GenBank
Match: EWM23317.1 (Zinc finger, SWIM-type [Nannochloropsis gaditana])

HSP 1 Score: 217.6 bits (553), Expect = 6.400e-53
Identity = 120/237 (50.63%), Postives = 147/237 (62.03%), Query Frame = 0 
Query:   58 LAALPHPPSSCYIPCLRRQSHPLAQSITTNNSPLAVLRSTSFRQQELDQARQAMEARLDTPSLCPLIAVTLRETVLRSILKDREKARTCMSGLLLDKGKAVTARLEQLHMAQYSQQELLQGCADALAFAPLVSQLESYARDRNLPGDCTSYCLDLGNASWVRIKTMQTFALPGSSPLFQHFDGCTLEVIRTHALSDLKLDTTGSVFYQLFQPVVANLVGVSLVGPGKKELEVVLEVG 295
            L A P  PS    P +  + H    S T++   +  LR+   RQQELD+ RQ +E RL  PS+C L+   LRETV+RS+L+DREKAR CM  L+      + A L QL M Q SQQELLQ C D LAF PLVS+LE+YARDRN P DCTSYCLDLG  SWVRIK+ Q     G SPLFQHFDGC+  V RT  L+ L    TG   + LFQPV  +++          E++VV+EVG
Sbjct:   42 LPAAPPLPS----PSVLSEVHSQKNSQTSDT--IIELRNAFARQQELDEKRQGIEVRLADPSMCSLVTRALRETVVRSLLRDREKARACMKNLMFGIDGEIVAALTQLSMVQSSQQELLQRCEDVLAFEPLVSKLETYARDRNFPQDCTSYCLDLGIDSWVRIKSTQIIVSLGDSPLFQHFDGCSFNVTRTLRLAHLSPTMTGPTLFNLFQPVAVSVISAEFQKSKIPEMQVVVEVG 272
The following BLAST results are available for this feature:
BLAST of NO18G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23317.16.400e-5350.63Zinc finger, SWIM-type [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003985NSK003985Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01290.1NO18G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633651gene_9056Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g1gene7112Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01290.1NO18G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01290 ID=NO18G01290|Name=NO18G01290|organism=Nannochloropsis oceanica|type=gene|length=1285bp
TCCATTCCTAGGCCTTCTTTTCATGCTGCCACTTTCCTCATTCATTACAT
CTACCTCCTCCTCGCTGGTTTCCCGGCACAGGGGCCCTCCTGCCCATCGC
CTGCCTCCTCCTCCACCACCACAACCTCCTCCTCTCCAGCCTCCTTCTCC
TCTTCGTCGTCGTCTCTTACCTCCTCGCCGCCACTCATATTCCCTTGCTG
CTTTGCCCCATCCTCCTTCTTCCTGCTACATTCCATGCCTTCGCCGCCAG
TCCCATCCCCTGGCTCAGTCAATTACCACCAACAACAGTCCCTTGGCTGT
GCTGCGCTCCACTTCCTTCCGACAACAAGAACTCGATCAAGCTCGACAAG
CTATGGAAGCACGGCTTGACACCCCTTCGCTGTGCCCTTTGATTGCGGTA
ACGTTGCGCGAAACAGTATTGCGGTCCATCCTTAAGGACAGGGAAAAGGC
GCGCACTTGCATGTCAGGCTTGCTTCTCGACAAGGGGAAAGCTGTGACGG
CCAGACTAGAGCAGTTGCACATGGCGCAGTATTCGCAACAAGAGCTGCTG
CAGGGGTGCGCCGATGCTTTGGCTTTCGCTCCTTTGGTATCCCAGCTCGA
AAGTTATGCTCGTGATCGCAACCTACCGGGCGACTGTACTTCCTACTGTT
TGGATTTGGGGAATGCCAGTTGGGTACGGATAAAGACGATGCAAACATTT
GCCCTCCCTGGCTCCTCCCCGCTCTTTCAGCACTTTGATGGGTGCACATT
GGAGGTTATACGCACACATGCATTGTCGGATCTGAAGCTTGACACGACGG
GCTCGGTCTTCTATCAATTGTTTCAGCCCGTGGTGGCAAATCTGGTAGGT
GTTTCGTTAGTTGGGCCGGGAAAGAAGGAACTGGAGGTGGTGCTGGAGGT
GGGCAGCAGCGAAGGTGGGCTTTATGTCGATGCGGGGGGAGAGGAGGAGG
AAGAGGGAAAGGAGGAGTTGGAGGTGAAGGAGAAGGGGAGGCTTTTCGTT
TGGCTTGCTATGGGTACGAAACCTTTTTCCCTCAACATGCATACCCAGAC
TGTAAGGCTTTGGTCAAGACCTGGGCTTGTACCTTACCTCTGCCTTACCA
GCGGACAGCGCATCGACACTTGGTGGGACTCTTAATCCCTGTACGCCATC
CGTTGCCAGTGACAGAACGGAGCGGGGCTTTGAAAGTAATGGTGTCGATT
ACCAATTAGTTAGAGAAGGAAGGAGGGGGAAAATCGGAGAAATTGAGGAT
GCCATGAGAGACGAAACATGTTCCGGAAATGAACG
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protein sequence of NO18G01290.1

>NO18G01290.1-protein ID=NO18G01290.1-protein|Name=NO18G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MLPLSSFITSTSSSLVSRHRGPPAHRLPPPPPPQPPPLQPPSPLRRRLLP
PRRHSYSLAALPHPPSSCYIPCLRRQSHPLAQSITTNNSPLAVLRSTSFR
QQELDQARQAMEARLDTPSLCPLIAVTLRETVLRSILKDREKARTCMSGL
LLDKGKAVTARLEQLHMAQYSQQELLQGCADALAFAPLVSQLESYARDRN
LPGDCTSYCLDLGNASWVRIKTMQTFALPGSSPLFQHFDGCTLEVIRTHA
LSDLKLDTTGSVFYQLFQPVVANLVGVSLVGPGKKELEVVLEVGSSEGGL
YVDAGGEEEEEGKEELEVKEKGRLFVWLAMGTKPFSLNMHTQTVRLWSRP
GLVPYLCLTSGQRIDTWWDS*
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Synonyms
Publications