NO18G01250, NO18G01250 (gene) Nannochloropsis oceanica

Overview
NameNO18G01250
Unique NameNO18G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1577
Alignment locationchr18:429626..431202 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:429626..431202 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021995DUF3593
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO18G01250 vs. NCBI_GenBank
Match: EWM28918.1 (Protein of unknown function DUF3593 [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 8.300e-54
Identity = 107/129 (82.95%), Postives = 118/129 (91.47%), Query Frame = 0
Query:   54 GDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVD 183
            GD LE AGT+TL+WL  VNYGAVFA SLFPYL FLKNIW +D+PIPKTMKWGFASLLIFV+STIIGGIAAKLIY+++LAN+DYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR GERP  WTE+G +D
Sbjct:  112 GDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLD 240          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: XP_005853976.1 (hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526] >EKU22384.1 hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.7 bits (522), Expect = 1.200e-49
Identity = 119/219 (54.34%), Postives = 138/219 (63.01%), Query Frame = 0
Query:   16 SIISLKATLPDFDLIQSTTTGVLSLLSSP----PSVLLAGQ----DGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPK--------------------------------------------TMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVD 183
            + ++L A L D +  +   T +L L S P    PS++   Q     GD LE AGT+TL+WL  VNYGAVFA SLFPYL FLKNIW +D+PIPK                                            TMKWGFASLLIFV+STIIGGIAAKLIY+++LAN+DYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR GERP  WTE+G +D
Sbjct:   81 AFVALSAGLVDTETARGAITSLLPLSSPPAAAMPSLVAIAQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKVGGGCPKLLLFEHSRERATRSIASSAWRTSTDFRFPAPSSPSPQTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLD 299          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: CBN78626.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 4.600e-12
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   76 VFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGE 171
            +F +SLFPYL FL  +   +   P+   +GFA LL+FV++TI  GI AK  Y+E+LAN+DY+HG+AES L +TN+ +  A  +A+   +   GGE
Sbjct:   42 LFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFIVSAFRKAVVGKQPAAGGE 136          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: XP_005714398.1 (unnamed protein product [Chondrus crispus] >CDF34579.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 80.5 bits (197), Expect = 6.000e-12
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 0
Query:   77 FASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAI 155
            FA+SLFPYL FL  +  D+   PK   +GF  LL+FV +TI  GI AK+ Y ++LANID++HG AESLL +TN+++ +
Sbjct:   61 FAASLFPYLGFLYYLGRDEVKCPKLANFGFRFLLVFVFATIPAGIYAKVHYHDILANIDWLHGGAESLLTITNLLIVL 138          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: XP_007514713.1 (predicted protein [Bathycoccus prasinos] >CCO14953.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 79.3 bits (194), Expect = 1.300e-11
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   76 VFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKK 166
            +FA+SLFPYL+FL  +   +   PK   +GF  LL+FV +TI  GI AK+ Y ++LAN+D++HG AESLL +TN+++ +     L  A++
Sbjct:  125 LFAASLFPYLFFLFFLGKPETAFPKRALFGFKFLLVFVFATIPAGIYAKVHYSDILANVDWLHGGAESLLTITNLLIVLGMREGLRDAER 214          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: CEM23009.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 78.2 bits (191), Expect = 3.000e-11
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   74 GAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRAL 161
            G +FA+SLFPYL FL  +   +  +P+   +GF  LL+FV  TI  GI AK+ Y+E LAN+DY+HG AES L VTN+++ I   +A+
Sbjct:   22 GQLFAASLFPYLAFLWFLSRPETRMPRLANFGFQFLLVFVGMTIPAGILAKVWYNEKLANVDYLHGGAESFLTVTNLLIVIGMRQAI 108          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: WP_019498158.1 (DUF3593 domain-containing protein [Pseudanabaena sp. PCC 6802])

HSP 1 Score: 76.6 bits (187), Expect = 8.700e-11
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   75 AVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKK 166
            A+FA SLFPYL FL  I      +PK   WGF   L+FV  TI  GI AKL+Y E LAN+D++HG AESLL + NI++ +    A +  +K
Sbjct:    6 ALFALSLFPYLAFLWFITRSG-KMPKLALWGFYGTLVFVAVTIPVGIYAKLVYKESLANVDFLHGGAESLLTIANILIVLGFKNASDRLRK 95          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: GAX14921.1 (hypothetical protein FisN_12Lh381 [Fistulifera solaris])

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-10
Identity = 53/131 (40.46%), Postives = 71/131 (54.20%), Query Frame = 0
Query:   46 SVLLAGQDGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWT 177
            + LLA  D D  E               G  F +SLFPYL FL  +   +   PK +  GFA+ L+FV  TI   IAAK++Y   LA+ D++HG AESLL +TN+V  IA  +AL A  K++G   P+  T
Sbjct:   59 TTLLANMDADTAEALA------------GPFFGASLFPYLAFLYFLDRPENETPKGVTVGFATCLLFVFLTIPAAIAAKVLYGVSLADSDWLHGSAESLLTMTNLVTVIAFRQALRA--KEQGLPPPQSAT 175          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: XP_002504984.1 (predicted protein [Micromonas commoda] >ACO66242.1 predicted protein [Micromonas commoda])

HSP 1 Score: 75.1 bits (183), Expect = 2.500e-10
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0
Query:   70 EVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAK 165
            E+  G +F +SL PYL FL  +   +  +P    +GF  LL+FV  TI   I AKL+Y+++LAN+D++HG AESLL +TN+++ I     L   K
Sbjct:   88 ELIEGNLFGASLLPYLVFLYYLGMPESKMPPRALFGFKFLLVFVFGTIPCAIYAKLVYNDILANVDWLHGPAESLLTITNLLIVIGLREGLRDLK 182          
BLAST of NO18G01250 vs. NCBI_GenBank
Match: EJK60591.1 (hypothetical protein THAOC_19021 [Thalassiosira oceanica])

HSP 1 Score: 74.7 bits (182), Expect = 3.300e-10
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0
Query:   74 GAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRAL 161
            G  F  SLFPYL FL  +  D+   PK +  GFA+ L+FV  TI   IAAKL+Y   LA+ D++HG AESLL +TN+V  +A  +AL
Sbjct:   11 GPFFGLSLFPYLGFLYLLNVDENNTPKGVVVGFATCLLFVFLTIPAAIAAKLLYGVSLADSDWLHGSAESLLTITNLVTVVAFRQAL 97          
The following BLAST results are available for this feature:
BLAST of NO18G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28918.18.300e-5482.95Protein of unknown function DUF3593 [Nannochlorops... [more]
XP_005853976.11.200e-4954.34hypothetical protein NGA_0502100 [Nannochloropsis ... [more]
CBN78626.14.600e-1245.26conserved unknown protein [Ectocarpus siliculosus][more]
XP_005714398.16.000e-1251.28unnamed protein product [Chondrus crispus] >CDF345... [more]
XP_007514713.11.300e-1144.44predicted protein [Bathycoccus prasinos] >CCO14953... [more]
CEM23009.13.000e-1148.28unnamed protein product [Vitrella brassicaformis C... [more]
WP_019498158.18.700e-1148.35DUF3593 domain-containing protein [Pseudanabaena s... [more]
GAX14921.11.100e-1040.46hypothetical protein FisN_12Lh381 [Fistulifera sol... [more]
XP_002504984.12.500e-1042.11predicted protein [Micromonas commoda] >ACO66242.1... [more]
EJK60591.13.300e-1049.43hypothetical protein THAOC_19021 [Thalassiosira oc... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01250.1NO18G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607911gene_9051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01250.1NO18G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01250 ID=NO18G01250|Name=NO18G01250|organism=Nannochloropsis oceanica|type=gene|length=1577bp
ATGACGTTAAAAATAgtgaggaactaagcaagttgaccaacgagaaaaag
ctaggcacctttgattgatctattttttttgcttcttttccttcttcaat
tcgcagacgtcctttgtatgccatgctcccttgcccttttggctgtcaac
cacgacattccattccttccctttctgaggaaatggaaagacatacaatt
ccggactctagtcgcaggaccaagcaaacaagacagcgatctcatccctc
ctttcagccgatcacatcaaactacccaccaactaaataggtggccatgg
gagccggcgccatcatctttatttcaatagccaagtgctccctcagtaca
caccccatcagtgcgccagtcagagccttcgtgcccatgcgtctaccctc
tagTCAGATGGTGTCCCGCCTCCCTTCCTCCTCTCCATCATCTCGCTCAA
Agtgagttttccgggcgctgcgatgctatccctcctttaaccccgtccgt
cccgtctcccttctccccgtgccctgctcacacactacacacgacctaac
ccatatatcgcccgctttcccattctctcggacttctcccctcgagGCCA
CTCTCCCCGATTTCGACTTGATTCAGAGCACCACCACCGGGGTCCTCTCC
CTCCTCTCCTCCCCCCCTTCCGTCCTCCTCGCTGGCCAAGATGGCGATTG
GCTGGAGACCGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATT
ACGGTGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAG
AATATCTGGGCTGACGACTTTCCCATACCAAAGgtagggagggagggagg
cagggagaaagggagggagggagggggacaggtgaagagattgcgccttg
ggttcttcttttcttttgaattgttcacgtttcttgtccgagcaggcctt
gttctctctagatcacacgctccctccaccccttgccctccctccctccc
cccctccctccctccctccacgccttcagACGATGAAATGGGGCTTTGCC
TCCCTTTTGATTTTCGTCATCTCCACCATTATCGGAGGGATCGCGGCCAA
GCTCATCTACGACGAGCTCCTGGCTAACATCGACTACATTCACGGCGTGG
CTGAGTCCTTGCTAGgtacgcccttcctccctccctcccttcttccctcc
ctccctccctccctcccacactccctcactcctttatcaatctttgcatc
atccccttccctccttggcatttagcggctgtgatttcatgccattagtg
ctatggtttctgtgtcaacctctccggcttatcctaaacagaaccctcca
gaaagcgacccgccgtctcaatcccttcgtcctcctcgcctgacctcact
tccctcttctctatctctcgtcccatcctttctccctccatccctctcta
ctcaccggcagGCGTCACCAACATAGTTCTGGCCATCGCCGCGTTTCGAG
CCTTGGAAGCTGCCAAGAAAGACAGGGGTGGGGAGCGGCCGGAAAGATGG
ACTGAGGACGGTGGAGTGGATGTGTGA
back to top

protein sequence of NO18G01250.1

>NO18G01250.1-protein ID=NO18G01250.1-protein|Name=NO18G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MTLKISDGVPPPFLLSIISLKATLPDFDLIQSTTTGVLSLLSSPPSVLLA
GQDGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPK
TMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNI
VLAIAAFRALEAAKKDRGGERPERWTEDGGVDV*
back to top
Synonyms
Publications