NO18G01240, NO18G01240 (gene) Nannochloropsis oceanica

Overview
NameNO18G01240
Unique NameNO18G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length871
Alignment locationchr18:428150..429020 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:428150..429020 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01240 vs. NCBI_GenBank
Match: XP_005855977.1 (hypothetical protein NGA_0524200 [Nannochloropsis gaditana CCMP526] >EKU20386.1 hypothetical protein NGA_0524200 [Nannochloropsis gaditana CCMP526] >EWM23302.1 hypothetical protein Naga_100053g5 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 1.400e-30
Identity = 67/97 (69.07%), Postives = 82/97 (84.54%), Query Frame = 0 
Query:    1 MNPLQHAIKERTATADKLDTAFESHIEHFLAKKAGTPDLAHVDINEHRPAEARKMANVATSVYFEPYYAASSTGVGTLGARANSVDAGVAYCQRVKE 98
            MNPLQH+I ERT T+DK D AFE+HI  FLAKKAG  +LAH+DI E  P  A++MA VATSVYFEPY+AA+S+GVG+L ARANS+DAG+AYC++VKE
Sbjct:    1 MNPLQHSITERTTTSDKADAAFENHINAFLAKKAGVLNLAHIDIGEKLPERAKRMAGVATSVYFEPYFAATSSGVGSLAARANSIDAGLAYCKKVKE 97
The following BLAST results are available for this feature:
BLAST of NO18G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855977.11.400e-3069.07hypothetical protein NGA_0524200 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003981NSK003981Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01240.1NO18G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100053g5gene7115Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01240.1NO18G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01240 ID=NO18G01240|Name=NO18G01240|organism=Nannochloropsis oceanica|type=gene|length=871bp
ATGgtaagtgggatgcacagcggacggacaagctgtaggggcagccgtat
gaagcgctggtgtgagcatgtatctttagtgcctgtgccgcgggcgctta
tcctgtagctgtcgatgcccttcctgacgagccaggacgtctccatcctc
accacttctctttttttcacgctggctatacaatcgtttgcgcctaagcc
tgaacatgccgtacatacggacattcagtatctgtagctttttggaggct
ggtgtcgctttgtagtagaaggagatatttgataaggttaacgcgccccc
ggcacgatcaccttggtttgctgtcctactcgccggggtgaattctccca
ccctaccacacgcgccttattatcgcccttgattgtggccattgatcttg
aggctgttgtggacgactcaactttacgagatggatatccctggtaccct
ccttctcgtttcatctcacgctcaggcactcattatcacatcccttttct
tcctctcacccttccgatcgaaacagAACCCCTTGCAACATGCTATTAAG
GAACGAACGGCCACGGCCGACAAGCTTGATACGGCCTTCGAGTCCCACAT
AGAGCACTTTCTGGCGAAGAAGGCTGGCACGCCTGACCTTGCCCATGTGG
ACATAAATGAGCACCGTCCCGCGGAGGCCAGAAAGATGGCCAACGTCGCG
ACCTCTGTGTATTTTGAGCCGTATTATGCTGCGAGCAGCACGGGGGTAGG
CACTTTGGGTGCACGTGCCAATAGTGTGGATGCTGGCGTGGCGTATTGTC
AGAGGGTAAAGGAAGCGAATGCAGCGAATGCAGCGAATGCAGCGGCGGTA
GCGGCTGATGAAGCGAAGTGA
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protein sequence of NO18G01240.1

>NO18G01240.1-protein ID=NO18G01240.1-protein|Name=NO18G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MNPLQHAIKERTATADKLDTAFESHIEHFLAKKAGTPDLAHVDINEHRPA
EARKMANVATSVYFEPYYAASSTGVGTLGARANSVDAGVAYCQRVKEANA
ANAANAAAVAADEAK*
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Synonyms
Publications