NO18G01140, NO18G01140 (gene) Nannochloropsis oceanica

Overview
NameNO18G01140
Unique NameNO18G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr18:398850..399518 +

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Properties
Property NameValue
DescriptionChalcone isomerase, subgroup
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:398850..399518 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016872intramolecular lyase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036298Chalcone_isomerase_sf
IPR016087Chalcone_isomerase
Homology
BLAST of NO18G01140 vs. NCBI_GenBank
Match: GAX29183.1 (hypothetical protein FisN_28Lh012 [Fistulifera solaris])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 0
Query:   34 ITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYD--KIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMK 208
            I+ P T   LSL GVGVR K   GP  +K+Y V  Y    A+ +KL++ +  KT  KAL   L+     +      L M  KVGA  + +A+A+SV PR   GS   + K + ++L G+    A  G    F     + + VT+NGK QG +AS  LA A    YLDD  VS  M+
Sbjct:   31 ISFPDTRGGLSLFGVGVRRK---GP--IKIYSVAMY-STSALQEKLAQCQ--KTDKKAL-SVLQKGVKEEGQASFSLNMNFKVGAEKMASAIADSVAPR-HSGSSQDVEKLKALILKGVPQAGATKGTTMDFDC-SHDSISVTVNGKAQGSVASSSLASAFCDVYLDDKCVSPAMR 195          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_024385938.1 (fatty-acid-binding protein 3, chloroplastic-like isoform X2 [Physcomitrella patens] >PNR47019.1 hypothetical protein PHYPA_014139 [Physcomitrella patens])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 69/209 (33.01%), Postives = 102/209 (48.80%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTG----SKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRL-----GKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTI------NGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            +TEPA+ IKF   +T+P ++ +L+  G GVR +K +  L VKVY VG Y  +  V   L+ +KG         +ALF  L +    +K + +K+AR V  AT   AL E++ PRL     G   DAAL +F +V     K    + G          + L + +      N K +  I S  L  A+   +L  +AVS   K +VA+GI
Sbjct:  122 VTEPATSIKFALLLTVPDSSNTLTFLGAGVR-EKQIAFLKVKVYAVGVYA-QPDVAASLASWKGKSAADLVKDEALFQEL-AQAPVEKALQIKLARDVDGATFWGALDEALVPRLTASGAGADGDAALAEFGNV----FKNRSLQKGYVITLTWVQPSTLRIAVAESEAANLKTEASIESKALLSALYDVFLGTSAVSPSAKAAVAEGI 323          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_024385937.1 (fatty-acid-binding protein 3, chloroplastic-like isoform X1 [Physcomitrella patens])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 69/209 (33.01%), Postives = 102/209 (48.80%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTG----SKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRL-----GKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTI------NGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            +TEPA+ IKF   +T+P ++ +L+  G GVR +K +  L VKVY VG Y  +  V   L+ +KG         +ALF  L +    +K + +K+AR V  AT   AL E++ PRL     G   DAAL +F +V     K    + G          + L + +      N K +  I S  L  A+   +L  +AVS   K +VA+GI
Sbjct:  129 VTEPATSIKFALLLTVPDSSNTLTFLGAGVR-EKQIAFLKVKVYAVGVYA-QPDVAASLASWKGKSAADLVKDEALFQEL-AQAPVEKALQIKLARDVDGATFWGALDEALVPRLTASGAGADGDAALAEFGNV----FKNRSLQKGYVITLTWVQPSTLRIAVAESEAANLKTEASIESKALLSALYDVFLGTSAVSPSAKAAVAEGI 330          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_024385939.1 (fatty-acid-binding protein 3, chloroplastic-like isoform X3 [Physcomitrella patens] >XP_024385940.1 fatty-acid-binding protein 3, chloroplastic-like isoform X3 [Physcomitrella patens])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 69/209 (33.01%), Postives = 102/209 (48.80%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTG----SKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRL-----GKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTI------NGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            +TEPA+ IKF   +T+P ++ +L+  G GVR +K +  L VKVY VG Y  +  V   L+ +KG         +ALF  L +    +K + +K+AR V  AT   AL E++ PRL     G   DAAL +F +V     K    + G          + L + +      N K +  I S  L  A+   +L  +AVS   K +VA+GI
Sbjct:   83 VTEPATSIKFALLLTVPDSSNTLTFLGAGVR-EKQIAFLKVKVYAVGVYA-QPDVAASLASWKGKSAADLVKDEALFQEL-AQAPVEKALQIKLARDVDGATFWGALDEALVPRLTASGAGADGDAALAEFGNV----FKNRSLQKGYVITLTWVQPSTLRIAVAESEAANLKTEASIESKALLSALYDVFLGTSAVSPSAKAAVAEGI 284          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_017424354.1 (PREDICTED: fatty-acid-binding protein 3, chloroplastic [Vigna angularis] >KOM42669.1 hypothetical protein LR48_Vigan05g027300 [Vigna angularis] >BAT93208.1 hypothetical protein VIGAN_07213500 [Vigna angularis var. angularis])

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 59/204 (28.92%), Postives = 104/204 (50.98%), Query Frame = 0
Query:   23 EPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHK----TGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---DAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTIN-----GKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            EPA+K+KF   +  PG + SL+L G G R +K+   + VKVY  G Y+D+ ++  +L+ +KG       G+ +LF  +   ++++K + + + R V   T  +AL++++ PR+   +   + AL  F+ V L        + G           KL+V+++           I S  +A A+   +L DN VS  +K SVA+G+
Sbjct:   80 EPATKVKFQTCLNFPGCSNSLTLFGAGYR-EKVFAIIGVKVYAAGLYLDQ-SITPELNAWKGLSKDAIQGNSSLFQTI-FQSSFEKSLQIILVRDVDGQTFWDALSDAIAPRIPASTSVDETALTTFRGVFL----DRPLKKGTFILLTWLNPTKLLVSVSPNGFPSTVDATIESANVASALFNVFLGDNPVSHSLKSSVAEGL 276          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: OWM88557.1 (hypothetical protein CDL15_Pgr002324 [Punica granatum])

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 0
Query:   23 EPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKT----GSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPR---LGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTIN-----GKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGILTWIN 220
            EPA+K+KF  ++TL G ++ LSL G G R +K+   + VKVY  GFY++  ++  KL  +KG       G  +LF ++    + +K + + + R V   T  +AL E++ PR   L    ++AL  F+D+     +G     G          +K++V+++      +   EI S  +  A+   +L D  VS  +K SV  G++  +N
Sbjct:   82 EPATKVKFSTSLTLAGCSSPLSLIGTGYR-EKVFAIIGVKVYAAGFYMN-PSLSAKLDSWKGKSASSIHGDGSLFSSI-FQVSLEKSLQIVLVRDVDGKTFWDALDEAISPRIKTLTFVDESALSTFRDI----FQGRPLNKGTSIFLTWLDKSKMLVSVSSDGLPSEVDAEIESENVTSALFDVFLGDPPVSPSLKASVVVGLVKILN 283          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_003546743.1 (PREDICTED: fatty-acid-binding protein 3, chloroplastic-like [Glycine max] >KHN39751.1 Chalcone--flavonone isomerase 2 [Glycine soja] >KRH13487.1 hypothetical protein GLYMA_15G242900 [Glycine max])

HSP 1 Score: 75.5 bits (184), Expect = 2.400e-10
Identity = 57/204 (27.94%), Postives = 108/204 (52.94%), Query Frame = 0
Query:   23 EPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHK----TGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---DAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGK-----KQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            EPA+ +KF  ++  PG + SL+L G G R +K+   + VKVY  G Y+D+ +V ++L+ +KG       G+ +LF+ +   ++++K + + + R V   T  +AL++++ PR+ + +   + AL  F+ V L        + G          ++L+V+++           I S  +A A+   +L D+ VS  +K SVA+G+
Sbjct:   80 EPATNVKFQTSLNFPGCSNSLTLFGTGYR-EKVFAIIGVKVYAAGLYLDQ-SVTQELNAWKGQSKDAIQGNSSLFETI-FQSSFEKSLQIVLVRDVDGKTFWDALSDAISPRIPQPTTTDETALTTFRGVFL----DRPLKKGAIIILTWLNPSRLLVSVSSNGFPSTVDATIESANVASALFNVFLGDSPVSPSLKASVAEGL 276          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: OEU15653.1 (hypothetical protein FRACYDRAFT_218376 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.5 bits (184), Expect = 2.400e-10
Identity = 64/194 (32.99%), Postives = 98/194 (50.52%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYDKIV-LLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKG-GEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQ 213
            M + A+ I FD        ++ LSL GVGVR K   GP  +KVY VG Y  +  V + LS      +  K    AL S  + +    +LKM  KVGA  + +A+A+SV PR    SD+ + + +D++  G+ G G A  G    F     + + V ++GK  G + S  L +A    YLDD  VS  +++++ +
Sbjct:    1 MKDAATGIPFD------SKSSGLSLFGVGVRKK---GP--IKVYSVGMYCSDN-VQEDLSSISRSDSKDKKAIAALRSGASSNPTTFVLKMNFKVGAEKMASAIADSVSPR--HSSDSEVSQLKDLIFEGVSGKGAAVKGTVLEFDCT-DDGVEVKVDGKGYGNVPSDALGKAFRDVYLDDKCVSPKLRENILE 179          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: GAX25544.1 (hypothetical protein FisN_28Hh012 [Fistulifera solaris])

HSP 1 Score: 75.1 bits (183), Expect = 3.100e-10
Identity = 75/211 (35.55%), Postives = 103/211 (48.82%), Query Frame = 0
Query:    1 MARLSFACLVSACLALTTC--AMTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYD--KIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMK 208
            ++R + A  ++A L L     A T+ A+ I F      P     LSL GVGVR K   GP  +K+Y V  Y    A+ +KL+K K  KT  K L   L+     +      L M  KVGA  + +A+A+SV PR   GS   + K + ++L G+    A  G    F     + + VT+NGK QG +AS  LA A    YLDD  VS  M+
Sbjct:    2 LSRNAIAHAIAALLVLVVAVDARTDKATGISF------PDARGGLSLFGVGVRRK---GP--IKIYSVAMY-STSALQEKLAKCK--KTDKKTL-TVLQKGVKEEGQASFSLNMNFKVGAEKMASAIADSVAPR-HSGSSQDVEKLKALILKGVPQAGATKGTTMDFDC-SHDSISVTVNGKAQGSVASSSLASAFCDVYLDDKCVSPAMR 195          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: ADE76284.1 (unknown [Picea sitchensis])

HSP 1 Score: 74.7 bits (182), Expect = 4.000e-10
Identity = 63/207 (30.43%), Postives = 103/207 (49.76%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTY----DKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIA-----SGPLAQAMLKTYLDDNAVSKDMKDSVAQGILTWI 219
            + EPA+ +KF  ++ +PG ++SLSLAG G R KK +  ++VKVY  G YVD   +   L+ + G K GS+   D L  +  +    +K + + + R +   T   AL E++ PRL K + AA  K  D+     +G   + G          + ++V+I+      +A     S  +A A+   Y   + VS  +K SVA G+ + I
Sbjct:   90 IVEPATNVKFLTSLNVPGGSSSLSLAGTGFREKK-IAIISVKVYAAGLYVD-TTIKSYLAAWSG-KLGSQIEQDNLFFNAVFEAPVEKSLQIVLVRDIDGETFWGALDEALSPRL-KTTGAAEQKALDIFRETFRGKSLKRGTTIYLNWLKSSIMLVSISSDGSPSVADATIDSPAVAFALFDVYFGSHPVSPPLKKSVASGLASII 292          
The following BLAST results are available for this feature:
BLAST of NO18G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX29183.11.400e-1037.50hypothetical protein FisN_28Lh012 [Fistulifera sol... [more]
XP_024385938.11.400e-1033.01fatty-acid-binding protein 3, chloroplastic-like i... [more]
XP_024385937.11.400e-1033.01fatty-acid-binding protein 3, chloroplastic-like i... [more]
XP_024385939.11.400e-1033.01fatty-acid-binding protein 3, chloroplastic-like i... [more]
XP_017424354.11.800e-1028.92PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
OWM88557.11.800e-1029.19hypothetical protein CDL15_Pgr002324 [Punica grana... [more]
XP_003546743.12.400e-1027.94PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
OEU15653.12.400e-1032.99hypothetical protein FRACYDRAFT_218376 [Fragilario... [more]
GAX25544.13.100e-1035.55hypothetical protein FisN_28Hh012 [Fistulifera sol... [more]
ADE76284.14.000e-1030.43unknown [Picea sitchensis][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003971NSK003971Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01140.1NO18G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609055gene_9529Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CHIgene7126Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01140.1NO18G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01140 ID=NO18G01140|Name=NO18G01140|organism=Nannochloropsis oceanica|type=gene|length=669bp
ATGGCCCGTCTCTCATTTGCCTGCCTCGTCTCGGCCTGCCTGGCCTTGAC
AACCTGTGCGATGACCGAGCCGGCAAGCAAGATTAAGTTCGATGATACGA
TCACACTTCCCGGGACAGCGGCAAGTCTCAGCTTGGCGGGCGTGGGTGTG
CGTGTCAAGAAGCTCGTGGGGCCCTTGGCGGTCAAGGTGTACGGGGTGGG
ATTTTATGTGGACGAGAAGGCGGTGGGCAAGAAGTTGAGCAAATTCAAGG
GTCACAAGACGGGGAGCAAAGCACTTTTTGATGCCTTGGAGTCTGACACG
ACGTACGATAAGATTGTGCTCCTGAAGATGGCCCGCAAGGTGGGTGCCGC
CACGCTGGTAAATGCGTTAGCGGAAAGCGTAAAGCCTCGTTTGGGCAAGG
GTAGTGATGCGGCTCTGCTTAAATTTCAGGATGTGCTCCTTGCGGGGCTC
AAAGGTGGGGAAGCCGAGACAGGGAAGCAGTTCGGGTTTGGCATCCAGGG
AGGCAATAAGTTGATCGTGACAATCAATGGCAAAAAGCAGGGGGAGATCG
CGAGTGGCCCTTTGGCACAGGCAATGCTGAAGACTTATTTGGATGATAAT
GCTGTGTCGAAGGACATGAAGGACTCGGTGGCGCAAGGCATTTTGACCTG
GATTAATGTGACCAAGTAA
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protein sequence of NO18G01140.1

>NO18G01140.1-protein ID=NO18G01140.1-protein|Name=NO18G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MARLSFACLVSACLALTTCAMTEPASKIKFDDTITLPGTAASLSLAGVGV
RVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDT
TYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGL
KGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDN
AVSKDMKDSVAQGILTWINVTK*
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Synonyms
Publications