NO18G01140, NO18G01140 (gene) Nannochloropsis oceanica

Overview
NameNO18G01140
Unique NameNO18G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr18:398850..399518 +

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Properties
Property NameValue
DescriptionChalcone isomerase, subgroup
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:398850..399518 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016872intramolecular lyase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036298Chalcone_isomerase_sf
IPR016087Chalcone_isomerase
Homology
BLAST of NO18G01140 vs. NCBI_GenBank
Match: EWM23313.1 (Chalcone isomerase, subgroup [Nannochloropsis gaditana])

HSP 1 Score: 351.3 bits (900), Expect = 2.200e-93
Identity = 187/222 (84.23%), Postives = 204/222 (91.89%), Query Frame = 0
Query:    1 MARLSFACLVSACLALTTCAMTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGILTWINVTK 223
            M RLS AC VSA LALTT AM EPA+KIKF++TI+LPG+ A LSLAGVGVRVKKLVGPLAVKVYGVG YVD+    +KLSKFKGHK GSKALFDALE+   +DKIVLLKMARKVGAATLVNALAESVKPRLGKGS+AALL+FQDVLLAGLKGGEAETGKQFGFGIQGG+KLIVTINGKKQGEIASGPLAQA+LKTYLD+NAVSKDMK+SVAQG+LTWIN+ K
Sbjct:    1 MGRLSLACCVSALLALTTYAMIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETG-NFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK 221          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_005855968.1 (hypothetical protein NGA_0361402 [Nannochloropsis gaditana CCMP526] >EKU20377.1 hypothetical protein NGA_0361402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 330.5 bits (846), Expect = 4.100e-87
Identity = 172/202 (85.15%), Postives = 189/202 (93.56%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGILTWINVTK 223
            M EPA+KIKF++TI+LPG+ A LSLAGVGVRVKKLVGPLAVKVYGVG YVD+    +KLSKFKGHK GSKALFDALE+   +DKIVLLKMARKVGAATLVNALAESVKPRLGKGS+AALL+FQDVLLAGLKGGEAETGKQFGFGIQGG+KLIVTINGKKQGEIASGPLAQA+LKTYLD+NAVSKDMK+SVAQG+LTWIN+ K
Sbjct:    1 MIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETG-NFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK 201          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: CBJ30273.1 (Chalcone Isomerase [Ectocarpus siliculosus])

HSP 1 Score: 147.5 bits (371), Expect = 4.900e-32
Identity = 95/198 (47.98%), Postives = 123/198 (62.12%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFK---GHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGL-KGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            +TE A+KI F + ++LPG + S SL G GVRVKK +GP  VKVY VG YVDEKA  K+L   K   G   G    F    + + ++K ++LKMAR+VG   +V+ALAESVKPR+  GS   L  FQD+LL  + K G A+ G QFGF  + G  L V++NGK  G I SGPL+ AM+  YL   AVS   K + A G+
Sbjct:   33 VTERATKISFREKVSLPGGSGS-SLMGTGVRVKK-IGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGESLGKNDGFFTRVAKSNFEKTMVLKMAREVGTEKMVSALAESVKPRI-SGSKKPLDSFQDILLKAVGKEGAAKKGMQFGFVCKPG-ALCVSVNGKDAGTIKSGPLSSAMVDVYLGKKAVSPGAKKAFATGV 226          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_005836862.1 (hypothetical protein GUITHDRAFT_161963, partial [Guillardia theta CCMP2712] >EKX49882.1 hypothetical protein GUITHDRAFT_161963, partial [Guillardia theta CCMP2712])

HSP 1 Score: 94.4 bits (233), Expect = 4.900e-16
Identity = 73/186 (39.25%), Postives = 103/186 (55.38%), Query Frame = 0
Query:   34 ITLPGTAAS----LSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGIL 216
            IT P T  +    L   G G R K ++GP+AV VY VG YVD  A   K +  K  K+ +KAL +      +Y K + + MAR VGA  + NALAES++PR+ KG+DA L  F+    +  K    ET  +  F IQ G+ L V+  G+K+   +S PL +AM   YL ++ VS   K+S+  G+L
Sbjct:   65 ITFPETVKAGSKLLKFIGAGERKKAILGPVAVNVYAVGMYVDSDAA--KAAAPKDEKSANKALLEG-----SYPKALKIVMARTVGAEKIGNALAESLEPRV-KGTDAPLDAFKSFFGSMSK---LETNNEIDF-IQMGSDLQVSALGQKK-TFSSAPLCKAMFDIYLGESPVSVHAKESMVAGLL 237          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_013903925.1 (hypothetical protein MNEG_3049 [Monoraphidium neglectum] >KIZ04906.1 hypothetical protein MNEG_3049 [Monoraphidium neglectum])

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15
Identity = 70/217 (32.26%), Postives = 109/217 (50.23%), Query Frame = 0
Query:    6 FACLVSACLA---LTTCAMTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTG----SKALFDALESDTTYDKIVLLKMA-RKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            FA + +  LA   L      EPA+ I + D + +        LAGVGVR K+++G   + VY +G YVD     K L K+KG  +     ++A FDA+ +  ++++ + L ++   +  A  VNAL E + P L K   + ++K  + L     G   + G    F   G  KL+  I+G++ G I S  L +A+   YL  +AVS D K S AQG+
Sbjct:   54 FASVSAGALAPPKLFATPKVEPATGIDYPDNLCVITKNHCPGLAGVGVRAKRVLGLKNINVYALGLYVDAHGAKKALGKWKGSSSDTLLTNQAAFDAITTAESFERSLRLVISFGSLKRAQFVNALEERLAPPLNKAGKSDVMKSFERL---FDGASFKKGTAIDFSASGKGKLVTKIDGQQVGTIESPELVKALFDIYLGSDAVSADAKASFAQGL 267          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: OUS46896.1 (chalcone isomerase [Ostreococcus tauri])

HSP 1 Score: 82.4 bits (202), Expect = 1.900e-12
Identity = 70/197 (35.53%), Postives = 95/197 (48.22%), Query Frame = 0
Query:   18 TCAMTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            T   TE A+ +      T  G  A+L+LAGVG RVKK+ G L VKVY  GFYVD  AVG + +   G         DALE+  T ++ + LK AR VG   +V ALAE ++P +   S  AL +F+ +      G   + G    F       L   I GKK   IA   L  A+   Y+  + V   +K +V + I
Sbjct:    2 TTMTTERATGLAVPRAQTFDG--AALTLAGVGARVKKICG-LGVKVYACGFYVD--AVGVREAMGDGET-------DALEALKTCERSIRLKFARDVGGDKIVEALAERIRPAMDTDS-TALKRFEAI----FDGVSFKKGTSLDFTATADGALATRIKGKKVSHIADRALVDALFAAYVGADPVIPSLKSAVREFI 181          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_003080708.2 (Chalcone isomerase [Ostreococcus tauri] >CEG01417.1 Chalcone isomerase [Ostreococcus tauri])

HSP 1 Score: 81.3 bits (199), Expect = 4.300e-12
Identity = 69/197 (35.03%), Postives = 95/197 (48.22%), Query Frame = 0
Query:   18 TCAMTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            T   TE A+ +      T  G  A+L+LAGVG RVKK+ G L VKVY  GFYVD  AVG + +   G         DALE+  T ++ + LK AR VG   +V ALAE ++P +   S  +L +F+ +      G   + G    F       L   I GKK   IA   L  A+   Y+  + V   +K +V + I
Sbjct:    2 TTMTTERATGLAVPRAQTFDG--AALTLAGVGARVKKICG-LGVKVYACGFYVD--AVGVREAMGDGET-------DALEALKTCERSIRLKFARDVGGDKIVEALAERIRPAMDADS-TSLKRFEAI----FDGVSFKKGTSLDFTATADGALATRIKGKKVSHIADRALVDALFAAYVGADPVIPSLKSAVREFI 181          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_002286126.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95767.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.3 bits (194), Expect = 1.600e-11
Identity = 76/217 (35.02%), Postives = 109/217 (50.23%), Query Frame = 0
Query:    2 ARLSFACLVSACLALTTCAMTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGS-KALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGL-KGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGILT 217
            A L+ A  ++        A+ + A+KI+FDDT+        LSL GVGVR K   GP  +KVY VG Y D++      S  K +K G+   L  +L+S T      LLKM  KVGA  +  A+AESV PR      AA+   + ++L G+   G A  G    F       + V+++GK+ G  A+  L +A    YLDD AVS  +++S  +   T
Sbjct:   12 AFLAVALSIAPSSVHAAAALIDSATKIQFDDTL------GGLSLFGVGVRKK---GP--IKVYSVGMYSDDETKASISSIPKSNKDGALSTLRTSLKSATA--TTFLLKMNFKVGAEKMAAAIAESVAPR--TSDKAAVEALKKLILDGVATKGAATPGTVLRFDCSSETGVKVSVDGKEIG--AAPGLCEAFCDVYLDDKAVSPALRNSCVENCCT 211          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: PIM97697.1 (Chalcone isomerase [Handroanthus impetiginosus])

HSP 1 Score: 79.0 bits (193), Expect = 2.100e-11
Identity = 60/204 (29.41%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   23 EPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKT----GSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---DAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTIN-----GKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQGI 215
            EP +K+KF  ++TLPG ++SLSL G G R KK+   + VKVY  G Y ++ ++   L  +KGH         +LF+A+      +K + + + R +   T  +AL E+V PRL   +   ++AL  F+ +     +G   + G           K++V I+           I S  +  A+   +L  N VS  +K SV++G+
Sbjct:   70 EPETKVKFQTSLTLPGCSSSLSLLGTGYREKKVFAIIGVKVYAAGLYANQ-SIFSTLDAWKGHSAADVQNDSSLFNAI-FRANLEKSLHIILVRDIDGKTFWDALDEAVSPRLSSPTPVDESALSTFRSI----FQGRPLKKGTSIFLTWLDTTKMLVCISPDVNPSSVDATIESSNVTYALFDVFLGGNPVSPSLKASVSKGL 267          
BLAST of NO18G01140 vs. NCBI_GenBank
Match: XP_002503292.1 (predicted protein [Micromonas commoda] >ACO64550.1 predicted protein [Micromonas commoda])

HSP 1 Score: 77.4 bits (189), Expect = 6.200e-11
Identity = 63/197 (31.98%), Postives = 100/197 (50.76%), Query Frame = 0
Query:   21 MTEPASKIKFDDTITLPGTAASLSLAGVGVRVKKLVGPLAVKVYGVGFYVD----EKAVGKK-LSKFKGHKTGSKALFDALESDTTYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGLKGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDNAVSKDMKDSVAQ 213
            +TEP + +K      + G   +  L G+GVR+K++ G + VKVY  G YV+      AVG + + K        +ALFD + +    +K V L  AR + +A + +AL+E ++P LG  S  +L +F+    A   G   + G+   F   GG KLI +   K+ G+IA G L  A+   YL  + V    K+S+ +
Sbjct:   62 VTEPKTGLKLPGEYCVNGGKCA-PLTGMGVRIKRIAG-IGVKVYACGLYVNPASARAAVGDRYVGKSVKDVAKDQALFDVVNAAADVEKTVRLVFARDIDSAKIRDALSERLRPALGADS-PSLRRFE----AYFDGVTFKKGQSLTFTASGG-KLITSFGSKEAGQIADGKLCTALFDAYLGKSPVVPSAKESLGE 250          
The following BLAST results are available for this feature:
BLAST of NO18G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23313.12.200e-9384.23Chalcone isomerase, subgroup [Nannochloropsis gadi... [more]
XP_005855968.14.100e-8785.15hypothetical protein NGA_0361402 [Nannochloropsis ... [more]
CBJ30273.14.900e-3247.98Chalcone Isomerase [Ectocarpus siliculosus][more]
XP_005836862.14.900e-1639.25hypothetical protein GUITHDRAFT_161963, partial [G... [more]
XP_013903925.12.400e-1532.26hypothetical protein MNEG_3049 [Monoraphidium negl... [more]
OUS46896.11.900e-1235.53chalcone isomerase [Ostreococcus tauri][more]
XP_003080708.24.300e-1235.03Chalcone isomerase [Ostreococcus tauri] >CEG01417.... [more]
XP_002286126.11.600e-1135.02predicted protein [Thalassiosira pseudonana CCMP13... [more]
PIM97697.12.100e-1129.41Chalcone isomerase [Handroanthus impetiginosus][more]
XP_002503292.16.200e-1131.98predicted protein [Micromonas commoda] >ACO64550.1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003971NSK003971Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01140.1NO18G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609055gene_9529Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CHIgene7126Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01140.1NO18G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01140 ID=NO18G01140|Name=NO18G01140|organism=Nannochloropsis oceanica|type=gene|length=669bp
ATGGCCCGTCTCTCATTTGCCTGCCTCGTCTCGGCCTGCCTGGCCTTGAC
AACCTGTGCGATGACCGAGCCGGCAAGCAAGATTAAGTTCGATGATACGA
TCACACTTCCCGGGACAGCGGCAAGTCTCAGCTTGGCGGGCGTGGGTGTG
CGTGTCAAGAAGCTCGTGGGGCCCTTGGCGGTCAAGGTGTACGGGGTGGG
ATTTTATGTGGACGAGAAGGCGGTGGGCAAGAAGTTGAGCAAATTCAAGG
GTCACAAGACGGGGAGCAAAGCACTTTTTGATGCCTTGGAGTCTGACACG
ACGTACGATAAGATTGTGCTCCTGAAGATGGCCCGCAAGGTGGGTGCCGC
CACGCTGGTAAATGCGTTAGCGGAAAGCGTAAAGCCTCGTTTGGGCAAGG
GTAGTGATGCGGCTCTGCTTAAATTTCAGGATGTGCTCCTTGCGGGGCTC
AAAGGTGGGGAAGCCGAGACAGGGAAGCAGTTCGGGTTTGGCATCCAGGG
AGGCAATAAGTTGATCGTGACAATCAATGGCAAAAAGCAGGGGGAGATCG
CGAGTGGCCCTTTGGCACAGGCAATGCTGAAGACTTATTTGGATGATAAT
GCTGTGTCGAAGGACATGAAGGACTCGGTGGCGCAAGGCATTTTGACCTG
GATTAATGTGACCAAGTAA
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protein sequence of NO18G01140.1

>NO18G01140.1-protein ID=NO18G01140.1-protein|Name=NO18G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MARLSFACLVSACLALTTCAMTEPASKIKFDDTITLPGTAASLSLAGVGV
RVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDT
TYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGL
KGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDN
AVSKDMKDSVAQGILTWINVTK*
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Synonyms
Publications