NO18G01130, NO18G01130 (gene) Nannochloropsis oceanica

Overview
NameNO18G01130
Unique NameNO18G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1804
Alignment locationchr18:397837..399640 -

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Properties
Property NameValue
DescriptionTautomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:397837..399640 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014347Tautomerase/MIF_sf
IPR001398Macrophage_inhib_fac
Homology
BLAST of NO18G01130 vs. NCBI_GenBank
Match: EWM23308.1 (Tautomerase [Nannochloropsis gaditana] >EWM23309.1 Tautomerase [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 9.000e-52
Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLFSTIFG 124
            MPFVNIRTSA LDA+G+KAVTDAAH AI +VL+KPD+YIA++V V PNLQFGGTKAPAAMISVHSIGY GANAK NKEALLK+LG AM+ AG+VPGDRLFVSFEDVHKDFWGFNGQLFSTIFG
Sbjct:    1 MPFVNIRTSAQLDASGVKAVTDAAHNAIRDVLNKPDQYIAVDVTVSPNLQFGGTKAPAAMISVHSIGY-GANAKANKEALLKALGTAMKAAGDVPGDRLFVSFEDVHKDFWGFNGQLFSTIFG 122          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_002961952.1 (macrophage migration inhibitory factor homolog [Selaginella moellendorffii] >XP_002971135.1 macrophage migration inhibitory factor homolog [Selaginella moellendorffii] >EFJ27733.1 hypothetical protein SELMODRAFT_147673 [Selaginella moellendorffii] >EFJ37212.1 hypothetical protein SELMODRAFT_76736 [Selaginella moellendorffii])

HSP 1 Score: 78.2 bits (191), Expect = 2.000e-11
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +N+ T+ P D+     +   A KA++ ++ KP++Y+ I +     + FGGT+ PAA   V SI  GG     NKE L ++L E + +  +VP  R ++ F DV + F+G+NG  F
Sbjct:    1 MPTLNLSTNVPADSIVSSDILKDASKAVSRIIGKPEQYVMIVLKDSVPMSFGGTEEPAAYGEVISI--GGLGPSVNKE-LSEALSEILESKLSVPPSRFYIKFYDVQRSFFGWNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_024392322.1 (macrophage migration inhibitory factor homolog [Physcomitrella patens] >XP_024392323.1 macrophage migration inhibitory factor homolog [Physcomitrella patens] >XP_024392324.1 macrophage migration inhibitory factor homolog [Physcomitrella patens] >PNR42119.1 hypothetical protein PHYPA_016948 [Physcomitrella patens])

HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +NI+T+ PLD      +   A KA+ ++LSKP+ Y+ I++     + FGGT+ PAA   + SI  GG    TNK  L  ++ + ++T  +VP +R ++ F DV +   G+NG  F
Sbjct:    1 MPTLNIQTNVPLDGVVTSDILKDASKAVAQILSKPESYVLISLRGGIPMSFGGTEEPAAYGELISI--GGVGPDTNKR-LSAAISDILKTKLSVPSNRFYIKFFDVKRSDMGWNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_012828767.1 (PREDICTED: macrophage migration inhibitory factor homolog [Erythranthe guttata] >EYU18212.1 hypothetical protein MIMGU_mgv1a016594mg [Erythranthe guttata])

HSP 1 Score: 76.6 bits (187), Expect = 5.900e-11
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +N+ T+ P+DA     +   A KA+ ++LSKP+ Y+ I V+    + FGGT+ P+A   + SIG  G +A     A   ++ E ++T  ++   R ++ F DV + F+GFNG  F
Sbjct:    1 MPTLNLFTNVPVDAVVASDILKDATKAVAKILSKPESYVMILVNGGVPISFGGTEEPSAYGELISIGALGPSANAKLSA---TIAEILQTKLSIDSSRFYIKFYDVQRPFFGFNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: WP_070073073.1 (hypothetical protein [Acidihalobacter prosperus] >AOV17525.1 hypothetical protein BJI67_11035 [Acidihalobacter prosperus])

HSP 1 Score: 75.9 bits (185), Expect = 1.000e-10
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP ++I  +  L+A+G++A+   +   +  +L KP+ Y+ +     P+L+FGG + PAA + +HSIG   A  +   +AL K +    R AG +PG R ++ FE+V    WG +G  F
Sbjct:    1 MPLLSIEINRSLEASGVEALLTESSALVAGLLGKPESYMMVRHQYNPDLRFGGQEGPAAHLELHSIGLPDAMTQDLSQALCKLI---ERHAG-IPGSRTYILFENVPGQLWGHDGTTF 114          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_021769639.1 (macrophage migration inhibitory factor homolog isoform X2 [Chenopodium quinoa] >XP_021744767.1 macrophage migration inhibitory factor homolog isoform X1 [Chenopodium quinoa])

HSP 1 Score: 75.1 bits (183), Expect = 1.700e-10
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +NI T+A LD     +V   A  A+ +++ KP+ Y+ + +     + FGGT+ PAA   + SI  GG N  TNK+ L  ++   + T  +VP DR F+ F D    F+G+NG  F
Sbjct:    1 MPCLNISTNANLDGVDTSSVLSEATSAVAKLIGKPEAYVMVVLKGSVPMAFGGTEQPAAYGELVSI--GGLNPDTNKK-LSAAIASILETKLSVPKDRFFLKFYDTKGSFFGWNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_011094109.1 (macrophage migration inhibitory factor homolog [Sesamum indicum])

HSP 1 Score: 73.6 bits (179), Expect = 5.000e-10
Identity = 38/118 (32.20%), Postives = 65/118 (55.08%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +N+ T+ P+DA     +   A KA+ +++ KP+ Y+ + V+    + FGGT+ PAA   + SIG  G +      A   ++ E ++T  ++   R ++ F DV + F+GFNG  F
Sbjct:    1 MPTLNLFTNVPVDAVVASDILKDATKAVAKIIGKPESYVMVLVNGGVPISFGGTEEPAAYGELISIGGLGPSVNAKLSA---TIAEILQTKMSIESSRFYIKFYDVQRPFFGFNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_023765913.1 (macrophage migration inhibitory factor homolog [Lactuca sativa])

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-10
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +N+ T+ P+D      +   A KA+ +++ KP+ Y+ I ++    + FGGT+ PAA   V SI  GG N+  N + L  ++ E + T  ++   R ++ F DV + F+GFNG  F
Sbjct:    1 MPTLNLFTNIPIDPVIASDILKDATKAVAKIIGKPESYVMILLNGGVPIAFGGTEEPAAYGEVISI--GGLNSTVNGK-LSSTIAEILETKLSINSSRFYIKFYDVERSFFGFNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: XP_012474159.1 (PREDICTED: macrophage migration inhibitory factor homolog [Gossypium raimondii] >XP_016710182.1 PREDICTED: macrophage migration inhibitory factor homolog [Gossypium hirsutum] >XP_017617062.1 PREDICTED: macrophage migration inhibitory factor homolog [Gossypium arboreum] >KHG19316.1 Macrophage migration inhibitory factor [Gossypium arboreum] >KJB23265.1 hypothetical protein B456_004G096000 [Gossypium raimondii] >PPD85123.1 hypothetical protein GOBAR_DD17938 [Gossypium barbadense])

HSP 1 Score: 72.8 bits (177), Expect = 8.500e-10
Identity = 39/118 (33.05%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP +N+ T+ P+DA     +   A KA+ +++ KP+ Y+ I V+    + F GT+APAA   + SI  GG     N + L  ++ + ++T  ++   R ++ F DV + F+GFNG  F
Sbjct:    1 MPTLNLYTNVPVDAVTTSDILKDATKAVAKIIGKPESYVMILVNGGVPMAFAGTEAPAAYGELISI--GGLGPSVNAK-LSSTVADILQTKLSIDSSRFYIKFYDVQRSFFGFNGSTF 115          
BLAST of NO18G01130 vs. NCBI_GenBank
Match: SBT09039.1 (putative phenylpyruvate tautomerase [Candidatus Propionivibrio aalborgensis])

HSP 1 Score: 72.8 bits (177), Expect = 8.500e-10
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 0
Query:    1 MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQFGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLFVSFEDVHKDFWGFNGQLF 119
            MP + I+T+  LDA   K +   A +A+  +L KP+ Y+ ++++    + FGG  +P A + + SIG          +AL K     M TA  V  DR+++ F D     WG+NG  F
Sbjct:    1 MPLLKIQTNVILDAEAGKTLVADASRAVAAMLGKPERYVLVSLESAATMAFGGDSSPLAYLEMKSIGLPQGRTAEFSKALCK----LMSTALGVSADRVYIEFADAQGSMWGWNGGTF 114          
The following BLAST results are available for this feature:
BLAST of NO18G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23308.19.000e-5284.55Tautomerase [Nannochloropsis gaditana] >EWM23309.1... [more]
XP_002961952.12.000e-1135.59macrophage migration inhibitory factor homolog [Se... [more]
XP_024392322.12.600e-1136.44macrophage migration inhibitory factor homolog [Ph... [more]
XP_012828767.15.900e-1134.75PREDICTED: macrophage migration inhibitory factor ... [more]
WP_070073073.11.000e-1033.90hypothetical protein [Acidihalobacter prosperus] >... [more]
XP_021769639.11.700e-1036.44macrophage migration inhibitory factor homolog iso... [more]
XP_011094109.15.000e-1032.20macrophage migration inhibitory factor homolog [Se... [more]
XP_023765913.16.500e-1033.90macrophage migration inhibitory factor homolog [La... [more]
XP_012474159.18.500e-1033.05PREDICTED: macrophage migration inhibitory factor ... [more]
SBT09039.18.500e-1032.20putative phenylpyruvate tautomerase [Candidatus Pr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003970NSK003970Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01130.1NO18G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609058gene_9530Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g19gene7127Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01130.1NO18G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01130 ID=NO18G01130|Name=NO18G01130|organism=Nannochloropsis oceanica|type=gene|length=1804bp
TTTCTTCTTGATGATCCCTTCTTCTTGATGATCCCTTCTTCTTGCCCCCC
ATTCACTTTGCACCGAATCACACACACCCGCCGCTTCACATGTCCTCCGT
CTCTCCTTCCTCCTTGTATGTTTTACTTGGTCACATTAATCCAGGTCAAA
ATGCCTTGCGCCACCGAGTCCTTCATGTCCTTCGACACAGCATTATCATC
CAAATAAGTCTTCAGCATTGCCTGTGCCAAAGGGCCACTCGCGATCTCCC
CCTGCTTTTTGCCATTGATTGTCACGATCAACTTATTGCCTCCCTGGATG
CCAAACCCGAACTGCTTCCCTGTCTCGGCTTCCCCACCTTTGAGCCCCGC
AAGGAGCACATCCTGAAATTTAAGCAGAGCCGCATCACTACCCTTGCCCA
AACGAGGCTTTACGCTTTCCGCTAACGCATTTACCAGCGTGGCGGCACCC
ACCTTGCGGGCCATCTTCAGGAGCACAATCTTATCGTACGTCGTGTCAGA
CTCCAAGGCATCAAAAAGTGCTTTGCTCCCCGTCTTGTGACCCTTGAATT
TGCTCAACTTCTTGCCCACCGCCTTCTCGTCCACATAAAATCCCACCCCG
TACACCTTGACCGCCAAGGGCCCCACGAGCTTCTTGACACGCACACCCAC
GCCCGCCAAGCTGAGACTTGCCGCTGTCCCGGGAAGTGTGATCGTATCAT
CGAACTTAATCTTGCTTGCCGGCTCGGTCATCGCACAGGTTGTCAAGGCC
AGGCAGGCCGAGACGAGGCAGGCAAATGAGAGACGGGCCATTGTACAGAT
GCTGTGCTGACCCTGTGTTTGTAAGACGTGAGATATCTGACTGAAGCTTG
TTGAACACGAGCACGAGCGAGAATGATTCTGGTGGGGAGGTGAGAGTTGT
CCGACCGCGCCATTTTTACACATCCACTCAACGAAACACATGAGCAGACA
AGGTCACGGCTACAAGCAGATAGCGAATTGTATAACCTACGCGCGCTTCA
TCTTGCCAGGCTGGTCATAGCATAGTAAACCAAGTTCGCCTGTCCTGCAT
CGTCATCACCAGGAACACCGGCCCCATCGCATTTGCCTCCCCACACAACC
CAGGCGGCTTATACCTTTAAGCCACTCAGACTAGCTGCATGCCTCATCCC
AAATGATGAACGTTCCCTCAGCCGAATCCACCGCCCCTCCCCCCTCCCCA
CAGCAACTCCAACCATGCCCTTCGTCAACATCAGGACCTCTGCTCCCTTG
GATGCCGCCGGTATCAAGGCTGTGACCGACGCGGCGCACAAAGCGATCAA
TGAAGTCCTTAGTAAGCCCGATGAGTACATTGCAATTAATGTAGATGTCT
GCCCTAACCTACAATTTGGCGGGACCAAGGCCCCGGCGGCCATGATAAGT
GTGCATTCCATCGGATACGGTGGGGCGAATGCTAAGACGAATAAGGAGGC
TTTGCTGAAGTCCTTGGGGGAGGCGATGAGGACGGCGGGCAACGTGCCGG
GCGATCGCTTGTTTGTATCCTTTGAGGATGTGCACAAGGATTTTTGGGGA
TTTAATGGACAGCTCTTCTCCACCATTTTTGgtacgtaaaaggagggtgt
ttcttgtgactcgagacctttcccattggattacctggaagactaatcgc
cttcgctcacaacacttggcacactacagGTTAATATGTTTGAAAATGTC
CATGTTCGATCTTTCGAGCGTGCAGCTGTACCGCAACGAAATGAGAGGGA
GGAAAAAGAAACAGGAAAGAGTGGAGAAAAAAATGATACATAACAATGTG
CCCA
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protein sequence of NO18G01130.1

>NO18G01130.1-protein ID=NO18G01130.1-protein|Name=NO18G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQ
FGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLF
VSFEDVHKDFWGFNGQLFSTIFG*
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Synonyms
Publications