NO18G00870, NO18G00870 (gene) Nannochloropsis oceanica

Overview
NameNO18G00870
Unique NameNO18G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3097
Alignment locationchr18:326347..329443 +

Link to JBrowse

Properties
Property NameValue
DescriptionLeucine-rich repeat, ribonuclease inhibitor subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:326347..329443 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO18G00870 vs. NCBI_GenBank
Match: EWM23289.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 597.0 bits (1538), Expect = 9.000e-167
Identity = 381/884 (43.10%), Postives = 489/884 (55.32%), Query Frame = 0 
Query:    1 MAPLYEDGSAKLHPFEA--PTHRRRASWMALFEGTVPHVSTYLGFREHLTLASTCRKLYDCWPAQSGLKEMGIYLDRSSVPITTASPTRVPPPVLSLSSLPSVQRNHTLINSDNVSTTVVRGSSSNYTIWQQQQQPSRQWKSLTRLLRHWSHLQTLRFTGAISGPQEDYVQEALVTMPLAL----SXXXXXXXXXXXXXXXXNKP-----RTVLSQLQRLSFSKIGLFPYNASCIASTLLGPLGSHLLELDLSHNPLRDEGLSTIFKAIANNLSDPTVRRHRPSXXXXXXXXXXXXXXXSHGLPHLSSLDLSYTDCTSVGLHVFHHALRKGGMPLLRSLLLAGNPLKDEGGLVLATILEGKKLPFLEQLDTSACGLGPQACRALLNAGRGGRDGGMGRVKVLNVGSNYVDSAGLEGXXXXXXXXXXXXXXXXXXXXXXEGGAQVLASGW-------WEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSACPDLKRLDLEGSSSLSGQAWYEMCVGGREXXXXXXXXXXXEELNLAMCKRLGERGLIGLVLWGERLS---KSCNLTSLDLSHTGLDGSCVATRQVLGDLFVIFPHLKRLNLQGNLLGREGGRALADALASPRE--KRTFFPLEVLDVLETGLDHGTLLALLQGLGLSCVHFRELRVGQNDLESSNW-EG-VMNILGGEGGEGRGMDRLRVLDLSRSVLGDVFMWRSHERPALMRMIQKVEVLKMAWCNLGHEDIAALVESFENATDARKRERGGGEAVGLTCLDLSYNPHMGEEGIRRVLHFAFSPAMGRLRTLSLVSVGLGDAFIQHLVSLLTVENIDRWGHMESIDLRGNGQISKEARVSFQGHISRLRTKLMENERWGYARRVQGMVRI 860
            MAP    G  K H  +   P HRRR SW  LF+G VPHVS ++GFREHL +ASTC   Y  WP QS + +MG+YL R+SVP+               +S P  + N  L + D    ++ R + S++ +         +W+SL+R+L+HWSH++TLRF+G ISGPQE + QEALV +P +                       KP     R++L QL+ L FS+IGL P NAS +A+ L+GPLGS L++LDLSHNPL+DEG  TIFK++A ++ +P     R          XXXX   +HGL  L SLDLS+T  T  GL  F  ALRKG +  L  L+L GNPLK+EGGLVL  ILEG  LP L  LD SACG+GP A R LL+AG G   GGM  +K LNVGSNYVDS G+                        E    +LA+GW       WEG                              K  CP L+RLDLE ++SL GQ W E+  GGRE           E LNLA CKRLGE+GL G++ WG           LT LDLS T LDG  V T+Q L +L+ +FP L  LNL+GN LG  GGRALA+ LAS R         L VLDV  T L      +LLQ L   C   REL    NDL  S W EG  + +LG     G  M+ LRVLD+S++ LG  F+  S +  AL  ++ ++ VLKMAW + G ED+AAL+  F+      + E+  G  V LT LDL+YN  MGE  + R+L F+ SP MGRLR LSLV  G+GDA +  L  LLT++ +    H+E+++LRGN  ISK  R    GH++RL  +L E   WG++RR+Q +VRI
Sbjct:    1 MAPF---GDNKRHESQTILPNHRRRTSWTVLFDGAVPHVSLFMGFREHLMMASTCHTFYARWPIQSKILKMGVYLHRTSVPV---------------ASTPLREINCQL-HRDRAGGSIWRENGSSHDL---------KWRSLSRVLQHWSHIETLRFSGCISGPQEYFFQEALVELPASTLQKQQYHRSQRQKNVSLSAGNEKPYTFMTRSMLPQLKELVFSRIGLSPANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPGSGPR---------RXXXXSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMG---GGMAALKSLNVGSNYVDSEGVRALALVMRLGKLSRLDHLKVDLSGENALSLLAAGWNRDGGAGWEGEREGQAGGDLE-------------------KEGCPPLRRLDLEKNASLYGQGWAEVVEGGRE----GGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALP-RCACLRELFFANNDLSPSFWREGRAVEMLG-----GGNMEALRVLDISKNALGPGFL-PSQDSHALSALLARLHVLKMAWTDAGPEDVAALIAGFKGGVAGGEEEKLSG--VPLTVLDLAYNTRMGETEVLRLLEFSLSPRMGRLRALSLVGTGMGDAVVTALTGLLTLDRVLACEHLETVELRGNDGISKGCRQQLLGHLARLHNRLAEEAVWGHSRRLQSLVRI 812
The following BLAST results are available for this feature:
BLAST of NO18G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23289.19.000e-16743.10Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003936NSK003936Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00870.1NO18G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642952gene_9560Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100158g10gene7158Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00870.1NO18G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00870 ID=NO18G00870|Name=NO18G00870|organism=Nannochloropsis oceanica|type=gene|length=3097bp
ATAGTAACAGGACACAAATCGGGCATTGCCGTCTTCATCTGCCTCTCGCG
CTCCGTGTGCCTAGCCGACAAGCAAACGCCGCCCCACTCCCACGCCTGTA
GGGAAGCCTACGCGACAGGCGAGTCAGAGCCCGACAAGACACACCATAGC
TGATTTAAAGCCATGGCACCGTTATATGAGGATGGATCTGCAAAGCTCCA
TCCCTTTGAAGCACCCACCCACCGGCGGCGGGCAAGTTGGATGGCCCTAT
TCGAAGGGACCGTCCCTCACGTGAGCACATACCTGGGATTCCGAGAGCAC
TTGACCTTGGCTTCGACATGCCGCAAGCTCTACGATTGCTGGCCTGCACA
ATCTGGGCTTAAAGAGATGGGCATTTATCTTGATCGTTCGTCCGTTCCCA
TCACCACTGCCTCTCCGACGCGTGTGCCCCCACCCGTGTTGTCATTGTCA
TCTTTGCCTTCGGTCCAGCGTAATCATACTCTCATCAATAGTGACAATGT
CAGCACCACGGTCGTCAGGGGCAGCAGCAGCAACTACACAATCTGGCAGC
AGCAACAGCAGCCGTCGCGACAGTGGAAGAGCCTCACCCGCCTGCTTCGG
CATTGGTCCCACCTGCAGACCCTGCGATTCACCGGCGCAATCAGCGGCCC
TCAAGAAGACTACGTTCAAGAGGCATTGGTGACCATGCCGCTTGCTCTCT
CCCCCCCTAAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCAGCTT
AACAAGCCCAGAACAGTGCTGTCCCAGCTCCAAAGGCTCTCTTTTTCCAA
AATTGGTTTGTTCCCTTACAATGCTTCCTGCATCGCATCGACCCTCCTGG
GCCCCCTCGGCAGCCACCTCCTCGAACTTGACCTCTCCCACAATCCACTT
AGGGACGAAGGGCTTTCAACTATATTTAAAGCCATAGCCAACAACCTCTC
GGATCCCACCGTCCGTCGTCATCGTCCCTCGCCCCCAATCCTTTCCACCT
CCCCCCCTCCTCCGCCTCCCCCGCATTCGCACGGCCTCCCCCACCTGTCG
TCACTCGACCTCTCCTACACGGACTGCACGAGCGTTGGTCTGCATGTTTT
CCACCACGCCCTACGGAAGGGAGGGATGCCGCTCCTTCGCTCCCTCCTTC
TGGCCGGAAACCCTTTGAAGGATGAAGGAGGGCTAGTTTTAGCAACAATA
CTAGAAGGTAAGAAACTTCCATTTCTAGAGCAGTTGGATACGTCTGCGTG
TGGCTTAGGTCCACAGGCGTGCCGGGCATTGCTGAATGCAGGGAGGGGAG
GGAGGGATGGAGGGATGGGGAGGGTGAAGGTTTTGAATGTTGGCAGTAAT
TATGTTGATTCTGCGGGTTTGGAAGGGCTGGCGAGAGGGATGAGGGAAGG
GGGGTTTGGGGCATTGAGGTCTTTAAAGCTTGGTCTGAGCTGGGAGGGAG
GGGCTCAAGTATTGGCTTCTGGGTGGTGGGAAGGGAATGGTAGCAGCAGT
AGCAGAGGTAGCGATGGTGGGGGAGGAGGGGGAGGGGGAGAGGGAGAAGG
AGGAGTAGGGGAAGGAAAGGAGGGGAAAAGCGCTTGTCCGGACTTGAAGC
GATTGGATCTCGAGGGTAGTTCCTCCTTAAGCGGACAGGCTTGGTATGAA
ATGTGCGTGGGAGGACGGGAAGGAGGGAGGGAGGGAGGGCTGCCTGCTGG
GTTGGAGGAGTTGAATTTGGCGATGTGCAAGAGGCTGGGTGAGAGGGGGT
TGATTGGATTGGTGCTGTGGGGGGAGCGACTGTCAAAGAGCTGCAATCTG
ACGTCTTTGGATTTGAGCCATACGGGCTTGGATGGTAGTTGTGTGGCGAC
GCGACAAGTCCTGGGGGATTTATTTGTCATTTTCCCACACTTGAAGCGAT
TAAATTTGCAGGGGAATCTATTGGGGAGAGAGGGAGGGAGGGCGTTGGCG
GATGCCCTGGCTTCTCCTCGGGAGAAGCGCACGTTTTTTCCTTTGGAGGT
GCTAGATGTGTTGGAGACGGGATTGGACCACGGGACGTTGCTGGCTTTGC
TCCAGGGGCTTGGGCTTTCATGTGTTCACTTTCGGGAGCTTAGGGTCGGA
CAGAACGATTTAGAGAGCTCGAACTGGGAGGGAGTGATGAACATTTTGGG
TGGAGAAGGAGGGGAAGGGCGAGGGATGGATAGATTGCGTGTGTTAGATT
TGAGTCGGAGCGTGTTAGGGGACGTTTTTATGTGGCGTTCTCATGAAAGG
CCTGCGTTGATGCGGATGATACAGAAGGTGGAAGTCTTAAAGATGGCCTG
GTGTAATTTAGGGCACGAAGATATAGCGGCCTTGGTGGAGTCATTCGAGA
ATGCGACGGATGCGAGGAAAAGAGAAAGAGGGGGAGGAGAGGCAGTGGGG
CTGACGTGCCTTGACCTCTCTTACAACCCTCACATGGGAGAAGAGGGGAT
AAGGAGAGTGTTGCATTTCGCCTTCAGTCCGGCAATGGGCCGACTTCGCA
CACTGTCATTGGTGAGCGTTGGCCTTGGGGATGCATTCATTCAGCACCTG
GTCTCCTTGTTAACCGTTGAGAACATCGACAGGTGGGGCCACATGGAGTC
GATTGATTTGAGAGGGAATGGCCAGATAAGCAAGGAGGCCAGAGTGAGTT
TCCAGGGGCACATTTCCCGGCTTCGGACGAAGCTGATGGAGAATGAGAGG
TGGGGATACGCCAGGAGGGTGCAAGGGATGGTGAGGATTGCGTCGTCGTG
ACGTAGATATAAAGAAGTTAGGCAATTAGGGAGGGGGAGAGTGCTTAGTT
TTATTGGTAGAGTAAGGTAAGGAAATGGAGAGGAAATAATAACGGAATGC
GTTGAAATTGTCGAAACATTTATGTGCATGTAAATAAAATAGAGTATGCA
GCATGAATTGGGTTTTTTCATAAGTGATTTGATGTGGCAGAATGACCGAA
GAATGACGAAAATATCAGGGTCGAGGGAATCAGTGAATGCGATCAGTTCC
TATTGAATGAAACGATCGATCGACAGGCACCTTAAAGCATTATGTTATAA
ACAATTATTGACAAAAACGGATGTATGGGGTGACTGCTTCTCTTTCG
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protein sequence of NO18G00870.1

>NO18G00870.1-protein ID=NO18G00870.1-protein|Name=NO18G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=863bp
MAPLYEDGSAKLHPFEAPTHRRRASWMALFEGTVPHVSTYLGFREHLTLA
STCRKLYDCWPAQSGLKEMGIYLDRSSVPITTASPTRVPPPVLSLSSLPS
VQRNHTLINSDNVSTTVVRGSSSNYTIWQQQQQPSRQWKSLTRLLRHWSH
LQTLRFTGAISGPQEDYVQEALVTMPLALSPPKQQQQQQQRRRQQLNKPR
TVLSQLQRLSFSKIGLFPYNASCIASTLLGPLGSHLLELDLSHNPLRDEG
LSTIFKAIANNLSDPTVRRHRPSPPILSTSPPPPPPPHSHGLPHLSSLDL
SYTDCTSVGLHVFHHALRKGGMPLLRSLLLAGNPLKDEGGLVLATILEGK
KLPFLEQLDTSACGLGPQACRALLNAGRGGRDGGMGRVKVLNVGSNYVDS
AGLEGLARGMREGGFGALRSLKLGLSWEGGAQVLASGWWEGNGSSSSRGS
DGGGGGGGGEGEGGVGEGKEGKSACPDLKRLDLEGSSSLSGQAWYEMCVG
GREGGREGGLPAGLEELNLAMCKRLGERGLIGLVLWGERLSKSCNLTSLD
LSHTGLDGSCVATRQVLGDLFVIFPHLKRLNLQGNLLGREGGRALADALA
SPREKRTFFPLEVLDVLETGLDHGTLLALLQGLGLSCVHFRELRVGQNDL
ESSNWEGVMNILGGEGGEGRGMDRLRVLDLSRSVLGDVFMWRSHERPALM
RMIQKVEVLKMAWCNLGHEDIAALVESFENATDARKRERGGGEAVGLTCL
DLSYNPHMGEEGIRRVLHFAFSPAMGRLRTLSLVSVGLGDAFIQHLVSLL
TVENIDRWGHMESIDLRGNGQISKEARVSFQGHISRLRTKLMENERWGYA
RRVQGMVRIASS*
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Synonyms
Publications