NO18G00810, NO18G00810 (gene) Nannochloropsis oceanica

Overview
NameNO18G00810
Unique NameNO18G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1860
Alignment locationchr18:312069..313928 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:312069..313928 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
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BLAST of NO18G00810 vs. NCBI_GenBank
Match: XP_005854909.1 (hypothetical protein NGA_0392600 [Nannochloropsis gaditana CCMP526] >EKU21453.1 hypothetical protein NGA_0392600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 236.9 bits (603), Expect = 6.900e-59
Identity = 132/251 (52.59%), Postives = 153/251 (60.96%), Query Frame = 0 
Query:    1 MSRMIEVERLKRSMLVRARLLQWRLRARRRPPARWFCGGAGNSTGRDQVAATMSSSRIPSSNANHAAFIDNDYTVPPKLNMSCHHRRIMMPSFIPPQDPASHLSDVAVACPELLEQVRHGQEGGEKEEGREFGAEKSVLSRWYQHRHTHACRSIVIHHPFLNPSLPACPPQIFHFVRSRELRAVTLAARPFKYQLDCQEVWRSLYFRRFTAAFGKFKNWKICYIMRDERCDRIRMWRNFFEASRGKAAMPV 252
            MSR+ EVE+LKRSMLVRARLLQWRL +RRRPPARWF G    +  RD  A +   SR+   NA  AA ID+ Y V  +   +CHHR+  +P F+PPQ PAS+LS++AVACPELLE                                                       QIFH+VRSRELRAVT+  RPFKY+LDCQE+WRSLYF RF AAFGKFKNWK CYI+RDERCDRIR WR FFEASR +A   V
Sbjct:    2 MSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVG----ANTRDN-ATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLE-------------------------------------------------------QIFHYVRSRELRAVTVVGRPFKYELDCQELWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVSVV 192
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BLAST of NO18G00810 vs. NCBI_GenBank
Match: EWM23296.1 (hypothetical protein Naga_100158g6 [Nannochloropsis gaditana])

HSP 1 Score: 236.9 bits (603), Expect = 6.900e-59
Identity = 131/247 (53.04%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:    1 MSRMIEVERLKRSMLVRARLLQWRLRARRRPPARWFCGGAGNSTGRDQVAATMSSSRIPSSNANHAAFIDNDYTVPPKLNMSCHHRRIMMPSFIPPQDPASHLSDVAVACPELLEQVRHGQEGGEKEEGREFGAEKSVLSRWYQHRHTHACRSIVIHHPFLNPSLPACPPQIFHFVRSRELRAVTLAARPFKYQLDCQEVWRSLYFRRFTAAFGKFKNWKICYIMRDERCDRIRMWRNFFEASRGKA 248
            MSR+ EVE+LKRSMLVRARLLQWRL +RRRPPARWF G    +  RD  A +   SR+   NA  AA ID+ Y V  +   +CHHR+  +P F+PPQ PAS+LS++AVACPELLE                                                       QIFH+VRSRELRAVT+  RPFKY+LDCQE+WRSLYF RF AAFGKFKNWK CYI+RDERCDRIR WR FFEASR +A
Sbjct:    2 MSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVG----ANTRDN-ATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLE-------------------------------------------------------QIFHYVRSRELRAVTVVGRPFKYELDCQEIWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRA 188
The following BLAST results are available for this feature:
BLAST of NO18G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854909.16.900e-5952.59hypothetical protein NGA_0392600 [Nannochloropsis ... [more]
EWM23296.16.900e-5953.04hypothetical protein Naga_100158g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003933NSK003933Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00810.2NO18G00810.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G00810.1NO18G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609174gene_9565Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100158g6gene7162Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00810.2NO18G00810.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G00810.1NO18G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00810 ID=NO18G00810|Name=NO18G00810|organism=Nannochloropsis oceanica|type=gene|length=1860bp
CTGCTGCCCAGTGTAAATCCTTACTTGACGTTGATATGCTGTCAAGTTTT
GTTGTTGGTCCTCCCGCAGCACGTACAGCAGTGTTTTAGGAATCGACTGT
GAAATGTCACCGCCGACTTGCTTTGACCCTTTGCTGTCAAACCAGGGGTC
TGCGCAGCCCTGCTTTTTGCCTTCCACCCTCGCAGCAAGCTATATGATAC
TGCCCCAGTTCTGCACCCTCGTATCATACCACTCACGCGGATACCTACCA
CCTACATAGGGCCCCTCCGGGCATCGTACGGGCGCGGGGTGGTGGAACAC
CAAGTTGTTGAGCTGTGGAGCACAAGTGAAGACGACCCATAAAAAGTATA
AACCAATTTCATTTCATTTTTAATCCCTGGAATGAGCCGTATGATCGAGG
TCGAGCGCTTGAAACGCTCCATGCTTGTCCGGGCCCGCCTCTTGCAGTGG
CGCCTCCGCGCCCGTCGTCGGCCGCCCGCCCGGTGGTTTTGTGGTGGTGC
CGGCAATTCGACTGGGAGGGATCAAGTAGCCGCAACGATGTCGTCCTCGC
GGATCCCATCAAGCAACGCTAACCACGCGGCTTTCATCGACAATGATTAC
ACTGTGCCACCTAAACTCAATATgtacgtaattggagtcatgttagctta
tttttgtatcttctatgcgcaggaaacgacctgcagctgatgcagttcca
gctgctctagcagccggccgtcggaaatcccaagacaaggatcgggtttt
catcgatctcttacacacaactgttacaaaacaaaaataatcttggatta
cagGTCATGTCATCATCGGAGGATTATGATGCCGTCCTTCATCCCTCCTC
AAGACCCAGCTTCTCACCTCTCTGATGTCGCCGTGGCCTGTCCCGAGCTC
TTGGAGCAGgtaagacacggccaggagggaggagagaaggaggaaggaag
agagtttggagcagagaagagcgtgctttcgagatggtaccagcacagac
acacgcatgcctgcagatctattgtcatccatcatcctttccttaatccc
tctctccccgcttgccctcctcagATATTCCATTTCGTTCGTTCCCGGGA
GCTGCGCGCCGTCACTCTCGCTGCTCGTCCTTTCAAGTATCAGCTCGATT
GCCAAGAGGTGTGGCGTTCTCTGTACTTCCGGCGATTTACCGCCGCCTTT
GGAAAGTTTAAAAATTGGAAAATCTGTTATATTATGAGGGATGAACGCTG
TGACAGGATAAGGATGTGGCGGAATTTTTTCGAGGCCTCAAGGGGAAAGG
CTGCAATGCCGGTGCAGTGAAAGAAATTGGGGAAGGAGGATGAAAGAGGT
GGAAGGAGAAATGATTGGATGTTAATTTCAATATCGGTACCAATGAATTA
TAGGCGCTGGTTCTGTAAGTAGAAATCAAGAGTACACACTTGAGAAAAGA
ATGAGCATACGAAGAGGTAGGGAGAGGAGCAGCTAGAGACGTGGGACCTG
GCAATGGAATTTCTTTTAAAAAACTCCTATACGAAAAATTGACAAAGCGA
AAGACGCACAGACAGGCTGAGAGATAGAAGGTGTGTGTATACATAAATAC
GTAAGTAAGGGCCCAGCCACACACTTTTTGAGGGGAGCAGGAGACGTTTA
GGGAAAGAAAACGAGTAAAAATATGGTGGAAGACGCCATCTTTTCACCGG
GACCAGACTAATAAAGGGCAGTGCCACAAGTAATTAGATGGTCTATCCGG
TTCCGTTTTTAAAAAGTAATGCTTGATAAAGGATGATAAACGAATGGAGG
AAAAAAGAAAGGAAGCGTTTGTAGAAATTACTGAAGGAAAACCACGTCTC
ATGGTCACCT
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protein sequence of NO18G00810.2

>NO18G00810.2-protein ID=NO18G00810.2-protein|Name=NO18G00810.2|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSRMIEVERLKRSMLVRARLLQWRLRARRRPPARWFCGGAGNSTGRDQVA
ATMSSSRIPSSNANHAAFIDNDYTVPPKLNMSCHHRRIMMPSFIPPQDPA
SHLSDVAVACPELLEQVRHGQEGGEKEEGREFGAEKSVLSRWYQHRHTHA
CRSIVIHHPFLNPSLPACPPQIFHFVRSRELRAVTLAARPFKYQLDCQEV
WRSLYFRRFTAAFGKFKNWKICYIMRDERCDRIRMWRNFFEASRGKAAMP
VQ*
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protein sequence of NO18G00810.1

>NO18G00810.1-protein ID=NO18G00810.1-protein|Name=NO18G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSRMIEVERLKRSMLVRARLLQWRLRARRRPPARWFCGGAGNSTGRDQVA
ATMSSSRIPSSNANHAAFIDNDYTVPPKLNMSCHHRRIMMPSFIPPQDPA
SHLSDVAVACPELLEQIFHFVRSRELRAVTLAARPFKYQLDCQEVWRSLY
FRRFTAAFGKFKNWKICYIMRDERCDRIRMWRNFFEASRGKAAMPVQ*
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Synonyms
Publications