NO18G00750, NO18G00750 (gene) Nannochloropsis oceanica

Overview
NameNO18G00750
Unique NameNO18G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1832
Alignment locationchr18:291127..292958 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:291127..292958 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030688preribosome, small subunit precursor
GO:003068690S preribosome
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Homology
[Close]
BLAST of NO18G00750 vs. NCBI_GenBank
Match: EWM23281.1 (hypothetical protein Naga_100181g5 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 1.300e-30
Identity = 88/191 (46.07%), Postives = 125/191 (65.45%), Query Frame = 0 
Query:    1 MPKVTAASQRRARARASSQPYTKQPPVPAAITVLPDPNRPDLAGTGLQKPAHRQKLMRKKAFLESIGESAAAAAVDVGARSQKA--ACKGSKHGEESLTPSWSDVRGLLVSLKSPSIALEGEKAAK------AMTSENFQK------IKSNAAKQIIAAKEVECLKHITAHPVFKSNPHTAIREHLRSQLA 178
            MPK   AS+RRARARAS++PY K P   +   VLPDP RP+LAGTGLQKP+   K++R+ AFL+SI E+AAAA+V++ A  +KA    K + HG+E++      + G  + + SP +  E + A        AMTS    +      IK+NAA+Q +AA+E+E LK +T+HP FK+ PH AIR+HLR+++A
Sbjct:    1 MPKTNVASKRRARARASNEPYAKFPNACSTQVVLPDPKRPELAGTGLQKPSRHHKMLRRMAFLKSIEENAAAASVEMAAGIEKADRRKKTTGHGDEAMQ---RGLNGTEMRVNSPFLGQENKAATGSPGATFAMTSTKRHEQRVSNTIKTNAARQRVAAEEIERLKMVTSHPAFKAGPHAAIRDHLRTRIA 188
The following BLAST results are available for this feature:
BLAST of NO18G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23281.11.300e-3046.07hypothetical protein Naga_100181g5 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003926NSK003926Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00750.2NO18G00750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G00750.1NO18G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633822gene_9572Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100181g5gene7169Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00750.2NO18G00750.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G00750.1NO18G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00750 ID=NO18G00750|Name=NO18G00750|organism=Nannochloropsis oceanica|type=gene|length=1832bp
GAACGTGGTTCCTAGAGTCGGTTGTGACTGACTGCTACCATTATTATTGG
GACCGGTTTGTGCGTGTTTGTCCGTGTACCCTGCCCTTCTTCACCCACTG
CATGTTGCATTGGCGGCCATTGGCGCAGAACAACGAATATTGAATGCACC
ATCAACGACATCACTTCAATGCGATTAGCCTCCGTAGGCACGTCAACACA
AGTGATCTGCCCCATTCCTTCAACTGTCCATGCCCCTTGCACGCTGTCAT
TCTGGCATGCACTATTTTCCTCAAGGCAGCCATGCATAGATGCATCCCCA
TGCATAGATGCATCCCCTCTCCTTAGAGACCTTCCACCCAACCGCCATGA
TAGGGGCTGATATCCCACCACCAACCTTACCATCGAACCACACCTCACTT
TTCCCCGGCAGTCATGCCTAAGGTCACCGCTGCGAGTCAACGGCGGGCTC
GCGCCCGGGCATCGAGTCAGCCTTACACCAAGCAACCTCCTGTCCCCGCT
GCCATTACCGTCCTTCCCGACCCCAACCGCCCTGATTTGGCCGGGACTGG
CTTGCAAAAGCCCGCGCACCGACAAAAACTCATGCGTAAAAAAGCATTTT
TAGAGAGTATTGGAGAATCAGCGGCGGCTGCGGCGGTAGACGTGGGGGCT
CGGAGTCAAAAAGCAGCTTGCAAGGGGAGCAAGCACGGGGAGGAAAGTTT
GACACCGAGCTGGAGCGATGTGCGCGGCCTGCTGGTCTCGCTAAAGTCCC
CGTCGATAGCGTTGGAAGGAGAAAAAgtatgtgaatgttcaatctgtgga
gggaggagtttattcatggtgcgaaaagggggaggatacatccactgagg
tggtaggcctcataacttacatggggttgttggctgatgccgtttgcgca
tattcccctcatcaattcatgttttcccaaattatcatgtataactacgt
agGCCGCAAAAGCGATGACAAGCGAGAACTTTCAAAAGATCAAGTCTAAC
GCGGCGAAGCAAATAATTGCCGCTAAGGAGgtgcgttttcgtcgtgggtt
aggggaatggggggcgataaagaagggcgcggcttgtaaagaacttcgat
gaaccgaacttcgtggctgcttacatttactagtcccctgtatgctggat
tgtcgatcatcgagtgcttctaacgtttttttcaaatgtttaaagctgtc
actgagttcggtctaatgatccgctagccaatgacgtgttgaacaagaac
gagtcacctacatgcattctcactgacatgtaagcggtgattaatgaacc
cgctttttaaattaaaaaaaaacggaacacctctcgcacctccgttgttc
ctgtctccctgactttctccttttcaaccccaacagGTGGAATGTCTAAA
GCATATTACCGCCCATCCTGTTTTCAAGTCTAATCCTCACACTGCTATCC
GGGAACACCTTCGCAGCCAGCTGGCTGCCTCTGCTGCTGCTGCCCGTGCA
GTGGCCAAAGAGAAAGGAGAAGGCGGAGAAGGTGAAGAAGGAAGGAGACA
TGGGAGTCTGTCGCTCAAGAAACGAGAGGAAGGAGGAGATGGAGGAAGAA
GGCTTAGTCGgtacgtcaattcagttgaatgtcatatgttggaatatggg
acgagagtgctggtgggagtaaagggagtgggaatgccactagttaattg
acagactgacgttcaccttcctttgtgaaacgcacacagGCAAGCCATTC
CCCCGGCAAGACGGCATAAACGATAATTATTTGATGTTTGAAATAGACCA
AAGTATGAAAGGAAAGAAGAAGAAGCCGCGCA
back to top

protein sequence of NO18G00750.2

>NO18G00750.2-protein ID=NO18G00750.2-protein|Name=NO18G00750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MPKVTAASQRRARARASSQPYTKQPPVPAAITVLPDPNRPDLAGTGLQKP
AHRQKLMRKKAFLESIGESAAAAAVDVGARSQKAACKGSKHGEESLTPSW
SDVRGLLVSLKSPSIALEGEKAAKAMTSENFQKIKSNAAKQIIAAKEVRF
RRGLGEWGAIKKGAACKELR*
back to top

protein sequence of NO18G00750.1

>NO18G00750.1-protein ID=NO18G00750.1-protein|Name=NO18G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPKVTAASQRRARARASSQPYTKQPPVPAAITVLPDPNRPDLAGTGLQKP
AHRQKLMRKKAFLESIGESAAAAAVDVGARSQKAACKGSKHGEESLTPSW
SDVRGLLVSLKSPSIALEGEKAAKAMTSENFQKIKSNAAKQIIAAKEVEC
LKHITAHPVFKSNPHTAIREHLRSQLAASAAAARAVAKEKGEGGEGEEGR
RHGSLSLKKREEGGDGGRRLSRQAIPPARRHKR*
back to top
Synonyms
Publications