NO18G00740, NO18G00740 (gene) Nannochloropsis oceanica

Overview
NameNO18G00740
Unique NameNO18G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length498
Alignment locationchr18:289857..290354 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:289857..290354 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00740.1NO18G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313034gene_9573Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00740.1NO18G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00740 ID=NO18G00740|Name=NO18G00740|organism=Nannochloropsis oceanica|type=gene|length=498bp
ATGGCTGAGGTCCTCGAGGCAGCCACCACAGACCTGACGTTCCTTCTAGC
CCCAGCCCCGAAAGGTCTCGGTCTAGATTTGGAAGACCGCTCCCTTACAG
ACACCATTGAACGCAATCCCGAGTCCCTCACGAAGGACATAGTCGCAGAT
CTCACCAAGCATCCCCTCATCGCCGTGGTAGCTGGAAAGGTCTTTGCGGT
GCGTTCCGCGTCCTTGCCGAATGTCATCCGGGCCATTGGTCGACTCTTGC
AATTCTGCGACCCCCACACCAGCAAACTGTGGGAAGAATTCAGGTGCTCT
GGTATGCTGGAAGAGCTACTTACACGCATGAGGGTAGTGGTGGAAAAGGG
ACGGTACCTCTTAGCTACTCATATACTCGGGGCTTTTTTACCTTTGCTTT
ACGTAGGGGATGGTTTGAGCTGTGACGGCGACAAGACGGACGATTGCGGC
GCTGACTTCCTCGAGCGGCTCGCATTAAACTGCAGTTTCCACACTTAA
back to top

protein sequence of NO18G00740.1

>NO18G00740.1-protein ID=NO18G00740.1-protein|Name=NO18G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MAEVLEAATTDLTFLLAPAPKGLGLDLEDRSLTDTIERNPESLTKDIVAD
LTKHPLIAVVAGKVFAVRSASLPNVIRAIGRLLQFCDPHTSKLWEEFRCS
GMLEELLTRMRVVVEKGRYLLATHILGAFLPLLYVGDGLSCDGDKTDDCG
ADFLERLALNCSFHT*
back to top
Synonyms
Publications