NO18G00710, NO18G00710 (gene) Nannochloropsis oceanica

Overview
NameNO18G00710
Unique NameNO18G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length459
Alignment locationchr18:285066..285524 -

Link to JBrowse

Properties
Property NameValue
DescriptionBEACH domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:285066..285524 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023362PH-BEACH_dom
Homology
[Close]
BLAST of NO18G00710 vs. NCBI_GenBank
Match: EWM23279.1 (BEACH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 146.4 bits (368), Expect = 7.500e-32
Identity = 76/143 (53.15%), Postives = 95/143 (66.43%), Query Frame = 0 
Query:   11 DSGADTSSSAYEVVEIHPEEVTTLQTASSVMARQ-TTDAWLSKPASRNNPVAISGRLCTKCAHGESFSPTHHCHYFPFKEVTLAYRPRYHLRQVALEIFLANGEKYLVTLEEPKIRNELLQVLKQRCNESMTVIHNAKVSPLD 153
            + G    +S YEV EI PE+ TT+QT  S+     TTD+  S P    + V IS RL  KC  G +  P H CHYFPF++VT+ YR RYHLR VALEIFLANGE +L+TLE P+ RN LLQ LK RC E++  + +A+VSPLD
Sbjct:   85 EKGQANLTSPYEVAEIEPEKATTIQTPHSLENEHGTTDSSPSVPVLCTHRVEISPRLRAKCVPGGALGPPHRCHYFPFEDVTVVYRRRYHLRHVALEIFLANGENHLITLEAPEARNNLLQKLKARCKEAIAAVESARVSPLD 227
The following BLAST results are available for this feature:
BLAST of NO18G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23279.17.500e-3253.15BEACH domain protein [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00710.1NO18G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00710.1NO18G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00710 ID=NO18G00710|Name=NO18G00710|organism=Nannochloropsis oceanica|type=gene|length=459bp
ATGATAGGAGGCAAACCGGGCACGTGGAATGACTCTGGGGCGGACACCTC
GTCGTCTGCTTACGAAGTGGTGGAGATCCATCCGGAAGAAGTAACGACGC
TGCAGACGGCAAGCTCGGTGATGGCCCGTCAAACTACCGATGCGTGGCTC
TCTAAACCGGCTTCGCGGAATAATCCGGTGGCTATTTCAGGGCGGCTTTG
CACCAAGTGCGCCCATGGGGAGAGCTTTAGCCCTACTCATCATTGCCACT
ATTTCCCCTTCAAAGAAGTGACGTTGGCATATCGGCCCCGCTATCACCTC
CGGCAAGTGGCACTTGAGATCTTTTTGGCCAATGGCGAGAAATATTTGGT
CACTCTCGAGGAGCCCAAGATCCGAAACGAGCTGTTGCAAGTCCTCAAGC
AGCGGTGCAATGAGTCAATGACCGTCATACATAACGCCAAGGTCTCGCCT
TTGGATTAA
back to top

protein sequence of NO18G00710.1

>NO18G00710.1-protein ID=NO18G00710.1-protein|Name=NO18G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MIGGKPGTWNDSGADTSSSAYEVVEIHPEEVTTLQTASSVMARQTTDAWL
SKPASRNNPVAISGRLCTKCAHGESFSPTHHCHYFPFKEVTLAYRPRYHL
RQVALEIFLANGEKYLVTLEEPKIRNELLQVLKQRCNESMTVIHNAKVSP
LD*
back to top
Synonyms
Publications