NO18G00560, NO18G00560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G00560 vs. NCBI_GenBank
Match: CEM35425.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 170.2 bits (430), Expect = 1.400e-38 Identity = 93/204 (45.59%), Postives = 122/204 (59.80%), Query Frame = 0 Query: 240 ASHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYRL 444 ASHL L+ +W Q L+PGG AVDATCGNG D+L ++ +FP+ L CID+Q AI +TR L E+ PP + + L FH Q++ FP I DNSV ++VYNLGYLPG DK T + T+ SL AL ++ GLIS+ YRGHPEG E+ V + L +R F+H PLNRP SP ++T+YRL Sbjct: 13 ASHLPLSRLLWKQGLKPGGRAVDATCGNGKDSLFLSTLIFPSDGDDETEAELICIDVQREAIGSTRSLLAEELRPPHLERIRL------FH-QSHERFPDCIADNSVDVIVYNLGYLPG-GDKSVTTRHDTTITSLTAAL---KLIVKGGLISVMLYRGHPEGTVESDGVISWASQLPADEWRVFLHEPLNRPTSPALMTLYRL 205
BLAST of NO18G00560 vs. NCBI_GenBank
Match: CBN76462.1 (methylase-related [Ectocarpus siliculosus]) HSP 1 Score: 154.8 bits (390), Expect = 6.100e-34 Identity = 89/209 (42.58%), Postives = 127/209 (60.77%), Query Frame = 0 Query: 235 RMNAAASHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYRL 444 R N AASH +AH +W QV PG +D T GNGHD+L +AK + + G+ G L+ +D+QE AI ATR++L + G +L+L + +I N+RE P + SV L+VYNLG+LPG DK T EDTLES+ A + ++ G+IS+ YRGH EG +E AV+D+ GL +R F+H +NR SP ++TI++L Sbjct: 258 RNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIV---ALKDGV-GSLYVMDVQERAIEATRERLRSELG-----ELALKRSTLI--NGNFREMPAELEPLSVQLVVYNLGWLPG-GDKSITTKLEDTLESIEAA---KRVVKHGGMISVMLYRGHAEGKRETEAVRDYAAGLAHSQWRVFMHERINRADSPELLTIFKL 451
BLAST of NO18G00560 vs. NCBI_GenBank
Match: PJD98172.1 (rRNA methyltransferase [Parachlamydia sp.]) HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31 Identity = 85/202 (42.08%), Postives = 115/202 (56.93%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYR 443 SHL LAH W ++RPG +DATCGNGHD L +A+ + G++ ID+QE ++ AT +L+E P L + L+ + + FP I SV L+VYNLGYLP + DK R T A+ T+ESL+ A P+L G+I +TCY GH EG KE AV DFV GLDP + C +NR +P ++ I R Sbjct: 10 SHLDLAHQYWTILVRPGDTVIDATCGNGHDTLKLAQLALHSD-----QGQVIGIDLQEQSLLATNARLMEHLSPDLLRRVQLICS-------CHSSFP-DIPPKSVRLIVYNLGYLP-KGDKSRTTRAKTTIESLQAAF---PLLMPGGVICVTCYPGHEEGEKEEKAVLDFVRGLDPHEWCCTYQQWMNRQKAPGLLLIQR 194
BLAST of NO18G00560 vs. NCBI_GenBank
Match: OJV11625.1 (rRNA methyltransferase [Chlamydiales bacterium 38-26]) HSP 1 Score: 145.6 bits (366), Expect = 3.700e-31 Identity = 80/203 (39.41%), Postives = 114/203 (56.16%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKF-LFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYR 443 SHL +AHS W +++ G + +DATCGNG D L +A+ L PT G L+ IDIQ+ A+ T Q L + P +SL++ Q + +FP I SV L+ YNLGYLPG +K T E TLESL++ALF ++ G +S+T Y GHPEG +E + + + L P + C H +NR SP+++ I R Sbjct: 11 SHLDVAHSYWNTLVKKGDVVIDATCGNGQDTLILAQLSLTPT------QGYLYGIDIQQRAVEITHQYLKQHLAPAFLARISLIN-------QCHSDFPQEISPESVRLITYNLGYLPGGGNKNLTTRVETTLESLKKALF---LIQKGGAVSITLYPGHPEGQREEEKILLWAKELSPFQWNCCHHQWINRFKSPSLLLIQR 197
BLAST of NO18G00560 vs. NCBI_GenBank
Match: WP_013181883.1 (rRNA methyltransferase [Waddlia chondrophila] >ADI38165.1 putative rRNA methylase [Waddlia chondrophila WSU 86-1044] >CCB91142.1 hypothetical rRNA methylase [Waddlia chondrophila 2032/99]) HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30 Identity = 76/202 (37.62%), Postives = 113/202 (55.94%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYR 443 SH+ LAH W +++PG I +DATCGNGHD L +A+ G+L+ D+Q+ AI +T+Q L+EK + + + F + FP I+ NSV L YNLGYLPG DK + T E TL+S+++AL + G++S+TCY GH EG +E + +F LDP + H LNR +P+++ I + Sbjct: 10 SHIDLAHKHWKSLVKPGDIVIDATCGNGHDTLVLAQLALTVE-----SGKLYACDLQKDAINSTKQSLLEKLEKKIVE-------RIFFVHGCHSSFPDEIQPNSVRLAAYNLGYLPG-GDKAKTTQTETTLQSIQKAL---EAVQDGGMVSITCYPGHTEGKREEKHILEFASKLDPKRWSLCHHRWLNRSKAPSLLLIQK 195
BLAST of NO18G00560 vs. NCBI_GenBank
Match: WP_088206239.1 (rRNA methyltransferase [Chlamydiales bacterium SCGC AG-110-P3] >SCA63812.1 Putative rRNA methylase YtqB [Chlamydiales bacterium SCGC AG-110-P3]) HSP 1 Score: 138.3 bits (347), Expect = 5.900e-29 Identity = 82/203 (40.39%), Postives = 110/203 (54.19%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFP-TGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYR 443 SHL LAH W + L P I +DATCGNGHDALA+A+ + P G L LH IDIQE+AI + + L ++ P + ++ Q++ E P VS ++YNLGYLPG DK TM E TL SL QA+ ++ G +S+TCY GH G E A+ D+ LD + C H NRP +P++ I R Sbjct: 10 SHLDLAHHNWARRLCPNDIVIDATCGNGHDALALAQLVIPKKGAQSPL---LHIIDIQENAIDSGYRCLEQQLTAPQMKAIH-------WYSQSHAELPTEKLPGPVSAVIYNLGYLPG-GDKTVTTMTESTLPSLMQAI---DLVKPGGFVSITCYPGHEAGYIEEVAILDWTHTLDRKEYSCCHHQWTNRPGAPSLFLIQR 198
BLAST of NO18G00560 vs. NCBI_GenBank
Match: CCB89272.1 (hypothetical rRNA methylase [Simkania negevensis Z]) HSP 1 Score: 136.0 bits (341), Expect = 2.900e-28 Identity = 80/203 (39.41%), Postives = 114/203 (56.16%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYRL 444 SH+ LAH W L+PG +DATCGNG+D+LA+A+ + G + CIDIQE AI ATR++L + P + ++ +H ++ FP + SL+VYNLGYLPG DK T A +TL+SL++AL +L G I LTCY GHP G +E + F + L+ F H +NR SP+++ I +L Sbjct: 13 SHIELAHQYWKSFLKPGDFVIDATCGNGYDSLALAQM---------VSGHVLCIDIQERAINATREKLKKNLTPSIFKVIT-------YHLGSHEHFP--PLKAAPSLIVYNLGYLPG-SDKTVVTDAFETLKSLKEAL---SLLKPGGAICLTCYVGHPGGEEEEKMLLSFSKSLNKNDFNVCYHQWINRLKSPSLLLIQKL 193
BLAST of NO18G00560 vs. NCBI_GenBank
Match: WP_006340136.1 (methyltransferase domain-containing protein [Parachlamydia acanthamoebae] >EFB42657.1 hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str. Hall's coccus] >CCB86869.1 hypothetical rRNA methylase [Parachlamydia acanthamoebae UV-7]) HSP 1 Score: 136.0 bits (341), Expect = 2.900e-28 Identity = 78/202 (38.61%), Postives = 116/202 (57.43%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYR 443 SHL +AH+ W +++ PG +DATCGNGHD L +AK + + G + +D+Q AIAATR++L ++ ++ + L H H FP+ +NSV L+VYNLGYLP + DK T TL SL+ AL ++A G +SLTCY GH EG +E A+ +FV+ L P + C + +NR +P ++ I + Sbjct: 10 SHLDVAHNHWKKLVNPGDTVIDATCGNGHDTLILAKLVLDSS-----SGCVIGMDVQPQAIAATREKLAKELS---ANQMERLHLHCACH----SIFPIQ-TENSVQLIVYNLGYLP-KSDKSLTTCVNTTLISLQAAL---SLIAPGGAVSLTCYPGHEEGKREEEAILNFVQKLRPQEWSCSYQTWVNRQKAPGLLLIQK 194
BLAST of NO18G00560 vs. NCBI_GenBank
Match: WP_041419374.1 (methyltransferase domain-containing protein [Simkania negevensis]) HSP 1 Score: 136.0 bits (341), Expect = 2.900e-28 Identity = 80/203 (39.41%), Postives = 114/203 (56.16%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYRL 444 SH+ LAH W L+PG +DATCGNG+D+LA+A+ + G + CIDIQE AI ATR++L + P + ++ +H ++ FP + SL+VYNLGYLPG DK T A +TL+SL++AL +L G I LTCY GHP G +E + F + L+ F H +NR SP+++ I +L Sbjct: 4 SHIELAHQYWKSFLKPGDFVIDATCGNGYDSLALAQM---------VSGHVLCIDIQERAINATREKLKKNLTPSIFKVIT-------YHLGSHEHFP--PLKAAPSLIVYNLGYLPG-SDKTVVTDAFETLKSLKEAL---SLLKPGGAICLTCYVGHPGGEEEEKMLLSFSKSLNKNDFNVCYHQWINRLKSPSLLLIQKL 184
BLAST of NO18G00560 vs. NCBI_GenBank
Match: WP_059061345.1 (methyltransferase domain-containing protein [Candidatus Protochlamydia naegleriophila] >CUI17206.1 putative rRNA methylase [Candidatus Protochlamydia naegleriophila]) HSP 1 Score: 133.3 bits (334), Expect = 1.900e-27 Identity = 74/202 (36.63%), Postives = 111/202 (54.95%), Query Frame = 0 Query: 241 SHLALAHSIWGQVLRPGGIAVDATCGNGHDALAIAKFLFPTGVSRGLYGRLHCIDIQESAIAATRQQLVEKAGPPLSDDLSLLDTHVIFHRQNYREFPLSIRDNSVSLLVYNLGYLPGQEDKRRPTMAEDTLESLRQALFIRPILATHGLISLTCYRGHPEGAKEAAAVQDFVEGLDPLTFRCFVHSPLNRPLSPTVITIYR 443 SHL LAH W ++L+PG A+DATCGNGHD L + + G ++ +D Q AI T+ L + P + + L+ + +FP SI S+ L+VYNLGYLPG DK T TL SL++AL ++ G IS+TCY GH EGA+E A+ ++++ L PL + H +NR +P+++ + + Sbjct: 10 SHLDLAHHYWSKLLKPGDRAIDATCGNGHDTLKLCQLALCQS-----EGEIYALDRQSEAIENTKAYLNQNLLPSQIEHIHLI-------LGCHSQFPASITPTSIKLIVYNLGYLPG-GDKAETTETSTTLLSLQEAL---NLVVPGGAISVTCYPGHLEGAREEEAILEWIKTLSPLEWSACHHKWINRRHAPSLLLLQK 195 The following BLAST results are available for this feature:
BLAST of NO18G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G00560 ID=NO18G00560|Name=NO18G00560|organism=Nannochloropsis oceanica|type=gene|length=3521bpback to top protein sequence of NO18G00560.1 >NO18G00560.1-protein ID=NO18G00560.1-protein|Name=NO18G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bpback to top Synonyms
Publications
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