NO18G00550, NO18G00550 (gene) Nannochloropsis oceanica

Overview
NameNO18G00550
Unique NameNO18G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2089
Alignment locationchr18:228358..230446 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:228358..230446 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO18G00550 vs. NCBI_GenBank
Match: EWM23253.1 (hypothetical protein Naga_100460g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 119.4 bits (298), Expect = 1.600e-23
Identity = 84/171 (49.12%), Postives = 99/171 (57.89%), Query Frame = 0 
Query:    4 FKSASMQYRRILLARGAQKPVVPRPVFLIAMTYLGVACTLPSAAAFLLPAAXXXXXXXXXXXXXXXXXXXXXXGRQAAVLRTGQT--------XXXXXXXXXXXXKGGKGDEDKDLSAEFSRRLEDEEESLPRVPIRKSSSPAPGGGVPQKVAQRSFSTMPKTQSYNKEDG 167
            F    M + RIL    ++KP  P P+ L+A T L     LP AA FLLP+                        RQ A+  TG++                    KGG  D+D++L+AEFSRRLEDEEESLPRVPIRKSSSP+PGGGVPQKVAQRSF+TMPKTQSYNKEDG
Sbjct:   12 FLEKLMAHHRIL----SRKP-SPCPL-LLATTLLVSLALLPLAAGFLLPSLPSSPAI-----------------RQGALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG 159
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BLAST of NO18G00550 vs. NCBI_GenBank
Match: EWM23254.1 (hypothetical protein Naga_100460g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 117.5 bits (293), Expect = 6.200e-23
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = 0 
Query:  101 KGGKGDEDKDLSAEFSRRLEDEEESLPRVPIRKSSSPAPGGGVPQKVAQRSFSTMPKTQSYNKEDG 167
            KGG  D+D++L+AEFSRRLEDEEESLPRVPIRKSSSP+PGGGVPQKVAQRSF+TMPKTQSYNKEDG
Sbjct:  120 KGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG 185
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BLAST of NO18G00550 vs. NCBI_GenBank
Match: GAX13677.1 (hypothetical protein FisN_14Lu323 [Fistulifera solaris])

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-9
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0 
Query:  156 PKTQSYNKEDGTDYWMDEKVLEAEKRRKAKRKA--PSPDQYPAEKIREEIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPSITIPD 243
            P   S  KE G DYW+DE+ L+ E+ R+A R A   S  Q P EK+  EI+SPY+ NWI FIS+ I +IAF    FPE ++ P I +PD
Sbjct:   79 PLISSNAKEKGQDYWVDEEALKREQEREAARIAARQSGKQVPDEKLWGEILSPYRQNWIGFISVFIITIAFIIQNFPELVENPIIQLPD 167
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BLAST of NO18G00550 vs. NCBI_GenBank
Match: XP_002179159.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48982.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 71.2 bits (173), Expect = 5.100e-9
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:  156 PKTQSYNKEDGTDYWMDEKVLEAEKRRKAKRKAPSPDQYPAEKIREEIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPSITIPD 243
            P      KE G DYWMDE+    E+ RKA  +A  P Q   EK+  E++SPYK NWI F ++ I  +      FPE L  P I+IPD
Sbjct:   99 PLLADRQKEQGEDYWMDEEEFARERERKAAMRAREPGQVSDEKLWGEVLSPYKQNWIGFFTVFIIVLVTIVTQFPELLNYPVISIPD 185
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BLAST of NO18G00550 vs. NCBI_GenBank
Match: CBJ26107.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 7.300e-8
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0 
Query:  157 KTQSYNKEDGTDYWMDEKVLEAEKR-RKAKRKAPSPDQYPAEKIREEIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPS-ITIPD 243
            KT   +   G DYW+D + ++ +K  R+AK KAP+PDQ+   K++ EIV+PYK NWIL IS+ I +IA F  + P  L  P+ IT P+
Sbjct:  195 KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAIVAIAGFVRINPGILDDPAIITFPN 282
[Close]
BLAST of NO18G00550 vs. NCBI_GenBank
Match: XP_002293002.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89463.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-7
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:  164 EDGTDYWMDEKVLEAEKRRK--AKRKAPSPDQYPAEKIREEIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPSITIPD 243
            E G DYWMD+  LE E++R+   K +         EK+REE+V+PYK NWI   S+ I  ++     FPE +QIP I IPD
Sbjct:  113 EAGLDYWMDDGDLERERQRRIAVKNRKAMEGSISKEKLREEMVAPYKQNWIGLFSVLIVVLSTIVTKFPEVMQIPVIPIPD 193
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BLAST of NO18G00550 vs. NCBI_GenBank
Match: EJK60183.1 (hypothetical protein THAOC_19513 [Thalassiosira oceanica])

HSP 1 Score: 63.9 bits (154), Expect = 8.100e-7
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0 
Query:  149 QRSFSTMPKTQSYNKEDGTDYWMDEKVLEAEKRRKAK-RKAPSPDQYPAEKIREEIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPSITIPD 243
            + +F   P  +    E G DYW+DE+ +   K R+++  K     +   +K++ EIV+PYK NWI + S+TI  +A     FPE L IP I IPD
Sbjct:   34 EHNFEVKPIRRRDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWIGYFSLTIVILATIGKQFPELLAIPIIPIPD 128
The following BLAST results are available for this feature:
BLAST of NO18G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM23253.11.600e-2349.12hypothetical protein Naga_100460g3, partial [Nanno... [more]
EWM23254.16.200e-2387.88hypothetical protein Naga_100460g3, partial [Nanno... [more]
GAX13677.11.300e-948.31hypothetical protein FisN_14Lu323 [Fistulifera sol... [more]
XP_002179159.15.100e-943.68predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ26107.17.300e-845.45expressed unknown protein [Ectocarpus siliculosus][more]
XP_002293002.12.100e-744.44predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK60183.18.100e-737.89hypothetical protein THAOC_19513 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR041ngnoR041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00550.1NO18G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605672gene_9836Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100460g3gene7196Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00550.1NO18G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00550 ID=NO18G00550|Name=NO18G00550|organism=Nannochloropsis oceanica|type=gene|length=2089bp
ATGCACAGgttcgccagtaaatcgaagctgcattgccaggaggcttcccc
tcgccgtggcctgcttcagtcatcgattatcatcataacctcacccatct
ccctcccttccccccctgatcatccccgccgtcttcctacagCTTCAAGT
CAGCAAGCATGCAATATCGCAGAATATTGTTGGCTCGAGGAGCACAAAAG
CCTGTGGTCCCTCGCCCTGTATTCCTAATTGCTATGACGTACCTAGGGGT
CGCCTGCACCTTGCCTTCGGCCGCCGCCTTCCTTCTACCAGCGGCAACCC
CCACGCCCTTCTCTACCTCCTCCTCCTTCTCCCTCTCCTCGTCCTCCGCA
TCGTCAGTATGCGgtaagtttttcatagggagctttgtggaaagaaaaaa
gcctacccttgtgaaggaaggattcaggttggaaaatgaaagatgtatga
ctgtgacaagtagcaccctcccctcgcggcttgccgcagagaacatcaag
aagaaaggactttttgttcatgttcctgccctttggctttttttatctct
atgtaccaagaaaggtcgtctcttcttgcgctgcgtggcggcaaggtaat
ataaggacggtgcagtgtgccatgtcgtcgccccctccctccctccctcc
ctccctccctccctccctccctccctccctccctccttgcccacgcagct
catcattttcacttccaatcacgacagGGAGACAAGCAGCAGTACTACGA
ACGGGGCAAACAGCAGCTGCAGCAGCGGCACGCTTGGTGGTACTCATGAA
GGGGGGGAAAGGCGACGAAGACAAGGACTTGTCGGCAGAGTTCTCCCGGC
GATTGGAGGATGAGGAGGAGgtgagggaaagggggaaggagggtggaagc
ggaagaggtgaaaaacgaatcgattgttactgatgatgaagagaacggcc
caaatacatatgtcaccccccctccccccctcctccctcctcctccccct
ccttcagTCCCTCCCTCGTGTCCCCATCCGCAAGTCCTCGTCTCCTGCCC
CCGGTGGAGGGGTGCCTCAGAAAGTGGCTCAGCGCTCGTTTTCCACCATG
CCCAAGACCCAGAGCTATAACAAGGAAGATGgtaaggagggagagaggga
ggggggggaaaaggagggagggaggaaagtgtagacgtggcgggaactgt
cattttagtatctcattcttcttacctttttccctctcctctctccctca
acagGCACGGATTATTGGATGGACGAGAAGGTGTTGGAGGCAGAGAAGCG
ACGGAAGGCCAAGCGCAAGgtagagccatcctcccttctgccctcctccc
tcccgccctcccttccgccttcaaccttgtctgccctttcttcgttgtat
gacaagtgtttggaatgtcctggttaacgacgagcatgaaatttttctca
cactcgattgtttttcatttcaattgtgtgtaaatttctgtatgtatttg
tttatgtatttgtttattatttatttcttgatattcattcattcatctac
tcatttacttacgtttaaatttatctgcattcctttattcatgtaattat
attttatttatttatttatttatttatttatttactcgacagGCCCCTTC
TCCGGATCAATATCCTGCAGAGAAAATCAGGGAGGAGATCGTCTCGCCCT
ATAAGAATAATTGGATCCTCTTTATAAGCATCACAATATTCTCCATCGCC
TTTTTCGCCTTCCTCTTCCCCGAGGAGCTGCAGATTCCTTCCATAACCAT
TCCTGATTTTGAGACTGGTGCTGCTATTCCTGAGACGATCAAATAAACGC
ATTAATTATTGAATGGATGAAAGGGGAAATCCTGCTTTTATTCAATGATT
GAGTGGTCTGGTTTGTTTGTAGTATGGCTGGGAAGGAAAAGCAAGAGGAT
AAGGGAGGTGAGTGAGGGGGGGAAGAGGGAAAAGACTCTGTTTTTGTGCA
AAAAGTGCGAAAAGAATAATATTAACTTTGATAATAATTATGATTATGAT
ATAAGTTGACAATGGTGACAACGAGGGTGTGGCATAAGT
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protein sequence of NO18G00550.1

>NO18G00550.1-protein ID=NO18G00550.1-protein|Name=NO18G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MHSFKSASMQYRRILLARGAQKPVVPRPVFLIAMTYLGVACTLPSAAAFL
LPAATPTPFSTSSSFSLSSSSASSVCGRQAAVLRTGQTAAAAAARLVVLM
KGGKGDEDKDLSAEFSRRLEDEEESLPRVPIRKSSSPAPGGGVPQKVAQR
SFSTMPKTQSYNKEDGTDYWMDEKVLEAEKRRKAKRKAPSPDQYPAEKIR
EEIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPSITIPDFETGAAIP
ETIK*
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Synonyms
Publications