NO18G00500, NO18G00500 (gene) Nannochloropsis oceanica

Overview
NameNO18G00500
Unique NameNO18G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4561
Alignment locationchr18:205745..210305 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:205745..210305 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO18G00500 vs. NCBI_GenBank
Match: EWM25898.1 (hypothetical protein Naga_100048g28 [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 7.700e-13
Identity = 85/305 (27.87%), Postives = 116/305 (38.03%), Query Frame = 0 
Query:  474 DNALGFDVEGSAILVVENPDDPPQSWRYTQRRLPGSHKGLTWSAALFNDEEGGYL--------YLVGVAGT---GMEAKQ----VLARLPLSSLSXXXXXXXXXXXXXXMEVWXXXXXXXXXXXXXXXXT----------------HLAAGSASTLVPLFPPGTLGVSECSVYYHPHLKSYLMVTLPAFANELLLWRSPSMTGPWAKTHLVNVEEMEKEFQKMEGYHTGSKNRLFYAAKFHPELARPPACPSSRPPSRLPFPPPLKEGEHELILTYCANVLGDWP------APSDYTPRFLRVVL 742
            DNA  F++ G+ +LVV+NP   P  W Y QR LPG+   L W +A+ + ++   L        YL GV  T   G   +Q     L+RLP+ SL               MEVW                T                H    +A  + P+F       SE SV Y   L +Y  V +   ++ ++L+ +  +T  W     V V ++   F     Y T       YA K HPEL+R                      E ELILT+  N  GD        A   Y PRFLR+ L
Sbjct:  778 DNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAMMHGDKDAELATGPEDMIYLFGVNNTEAVGTPPQQWQYETLSRLPVRSL--------VDLSFRDMEVWALTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVF-------SETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEP---VVVYKIPPPFNDPAVYMT-------YAGKAHPELSR----------------------EDELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKL 1035
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BLAST of NO18G00500 vs. NCBI_GenBank
Match: EWM29268.1 (glycolipid 2-alpha-mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 4.000e-9
Identity = 71/296 (23.99%), Postives = 116/296 (39.19%), Query Frame = 0 
Query:  475 NALGFDVEGSAILVVENPDDPPQSWRYTQRRLPGSHKGLTWSAAL-------FNDEEGGYLYLVGVAGT-------GMEAKQVLARLPLSSLSXXXXXXXXXXXXXXMEVWXXXXXXXXXXXXXXXXTHLAAGSASTLVPLFPPGTLGVSECSVYYHPHLKSYLMVTLPAFANELLLWRSPSMTGPWAKTHLVNVEEMEKEFQKMEGYHTGSKNRLFYAAKFHPELARPPACPSSRPPSRLPFPPPLKEGEHELILTYCAN------VLGDWPAPSDYTPRFLRVVLREGRGEGGR 751
            + + F+VEG++++V+ENP   P  WRY+   + G++    W +A+         D     LYLVG  G           +K VL R+ ++ L               MEV                    A   AS         +   +E S+ Y+  L +++ + + + + +L+LW + S++GPW       +  +   +  +  Y         YA K HPELAR                  L  G+ E + +Y  N      +L D    + Y P+F+RV  R G  E GR
Sbjct: 1063 DGMNFEVEGTSLIVIENPAAAPNRWRYSVTDIAGTNGTHNWFSAVAVAGGKEIADSPEDVLYLVGNVGARGLGVYDDEASKNVLGRIKVTDL--------LKRRFDRMEVLVEEAHESRESDGKELWMSTAEAEASVARRRKGIISPANAETSLQYNSELGAWVSLAVDSVSAQLVLWSARSVSGPWTS---AVIHSIPAPYDDLSLYRC-------YAGKGHPELAR----------------EGLPGGDVEFVFSYVCNAPSDSGILFDEGQLTLYAPQFIRV--RLGPAEDGR 1322
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BLAST of NO18G00500 vs. NCBI_GenBank
Match: WP_011521455.1 (DUF4185 domain-containing protein [Candidatus Koribacter versatilis] >ABF39653.1 hypothetical protein Acid345_0648 [Candidatus Koribacter versatilis Ellin345])

HSP 1 Score: 69.7 bits (169), Expect = 4.400e-8
Identity = 69/274 (25.18%), Postives = 109/274 (39.78%), Query Frame = 0 
Query:  476 ALGFDVEGSAILVVENPDDPPQSWRYTQRRLPGSHKGLTWSAALFNDEEGGYLYLVGVAGTGMEAKQVLARLPLSSLSXXXXXXXXXXXXXXMEVWXXXXXXXXXXXXXXXXTHLAAGSASTLVPLFPPGTLGVSECSVYYHPHLKSY--LMVTLPAFANELLLWRSPSMTGPWAKTHLV-NVEEMEKEFQKMEGYHTGSKNRLFYAAKFHPELARPPACPSSRPPSRLPFPPPLKEGEHELILTYCANVL--GDWPAPSD-YTPRFLRVVLRE 744
            ALGF+V G+ +  V    D PQ+W+ +   L         SA+   D +  Y++ +   G+     Q+L R+PL  L                + W                  L    A  ++        G SE SV YHP LK +  +MV    F+++++L  +PSM+GPW +  ++  V  M+K   + +      K+   YA K HPE                       E   EL+ TY  N +     PA +D Y P+ +R+ + E
Sbjct:  147 ALGFEVCGTDLAHVTGIKDVPQNWKISYSPLVAESVHANPSASALVDSDNLYIFTLYEQGS---RPQILTRIPLKGLRDPQKSLQYLGSD---DKWHDG---------------LEPAKAKAVM------NKGASEMSVRYHPELKKWVAVMVDPQIFSDKVILRTAPSMSGPWTEGDVIYQVPIMQKSDPRYD------KDTFCYAGKEHPEF----------------------EKAGELLFTYVCNTMKPAKLPAETDVYFPQVVRMPMPE 365
The following BLAST results are available for this feature:
BLAST of NO18G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25898.17.700e-1327.87hypothetical protein Naga_100048g28 [Nannochlorops... [more]
EWM29268.14.000e-923.99glycolipid 2-alpha-mannosyltransferase [Nannochlor... [more]
WP_011521455.14.400e-825.18DUF4185 domain-containing protein [Candidatus Kori... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR041ngnoR041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00500.1NO18G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673913gene_9827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00500.1NO18G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00500 ID=NO18G00500|Name=NO18G00500|organism=Nannochloropsis oceanica|type=gene|length=4561bp
ATGGCGGCCGGCATTGACGAGGGAGTCGCCCGCGCAGACTgtcccactca
gcctgaacttcttattcattaccacgcttggcgcgagaacttgcacgatt
cagacagcagaggacgcatgtctttctttgagattccctggagcctgtgg
ggggatgctccacgaaagggaagcgagttgtgaacgggacgagtgcaatt
aatgcctttccccctcctccctcctccctccccccctccctccgcgttct
cccattggacctcacaatcgatcctccgacacctatacactgcgtcgtcc
ctacactcccctcccagGCATTTTTTTGTATTTATCCATTTCTATCGTGG
CGGTGTTAGCCTCGTCCCGCCCTCGCCGTCCCTCCTCCCAGGCCTCCGGC
ACGCGTCACCTCCTCTCCCCCCTTCTCCTCATCTCCTCCCCTGTGTCCTC
CCTCTCCTCCTCCTTCTTCCCGCGTACCGCTACCGCCACGGTCACTCTCC
TTCTCTGCGTCACTGCAGGTCTGTGGGCACTCACTGCCTCCTCGTCCACC
CCTTCCTCCTCTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCAACCCCTCTCTCCTCGGCCCG
TGCACCAGTCCACCCTCGCCGTCAGCACCTCTGTCGATAGGAAACGCAGC
AACAGCAAGCAGCAGTATCAGCAGCAGTCATCCTCCCGTCTCCCTTGGCT
TTTTGCCACTTACTCCAACCTGTCCTCCTCCTCCCGTCCTTCCTTCCCAT
CCATGCCATCCACCATTCCTCCTCGTCCTCCTTCCTCCCCCTCCTCCTCC
CCCTCCCCCTCCTTCCCTTGGCGCCCACTCTGCCTCCCCACCAGCCAAGG
GCGGGAGGGAGAACGGGTGTGGGTATTTCGCCCTCCTCAAGCAGCACCGG
ACCTTCAGAAGCTGTTTTTTGATGCCCGTCGCTTGGCCCTGTGCCAGGAC
CACAAGGgtgagggaggaagggaggaagggagggagggagggtggttgag
agatgaatactttgttcattcattcaagtaatttgaaagagtgatgtctt
tgaccctccccctccctccctccctccctcagGCCTCGCATGGATGGGTG
CCGACGTTGCGACCTCCCTCCCCCTCTCCCCCTCCACCTACCTGTGGATC
TTCGGTGATACTCTCATCGGCAAATACCCGGAAGCTAACGCCTGGGGAGT
CAAGGGAGGCGTCCATGCTTTTCCTCGACAGACCCTCGgtaggtatatac
atacaaccacccctccctccttccctccctccctccttttctccaatttc
tcctttcctcttctctcttcttttctttcctcgctccctctcttcctttc
tctactcccgccctccttttttctacttcctcttgagctgcattccagta
ttccctccctcccctcctctactcctttcccccctccctttctctacact
gaaattactcaaggctctccccccgcccacccttcccccctccctctctc
cctgcctccctccctccctagGGCTCGTGCACATGACTCAAGGCTCTCCC
CCTAGTCCAGGAGACATTCACTTCATATGGCGGAAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAGCAGGACAAGGTGCTCTTGCCAG
GGGTCTCGGTGGCGGCGCCTGAGGAGGGAGGGAGGGAGAGAGGGAGGGAG
GGAGGGAGGGAAGAAAATGAGAAGGACGAATgtacgtaaaagggcgggag
ggagggagggagggagggagggagaggctgactcaaggcaataatgatta
tcaacctcccctccctcactccctctctccttcccctcctccttctcacc
ctccctcccaccagCCCATGGCGTCATCTCCTTTTTTGAACCCTCTCCTG
CTGTCCTTCGCGCGGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCC
CTCATCTCCCCTGCCGACAAAACACTTTATTTGTCTCCGGATCACAGCAG
GAGGGAGGAGAAGGAAGAGGAGGAGGAAGAGAGAGGAAGGGAAGAAGAAG
ATGATGACGGCCATCCGCGgtgagtggctgctcagccctccctcccttcc
tccctccctccctccctccctccctccctctttgaacgtatttatccctt
gctatgctcttttccttcacatctcttccctctctctctccctccctccc
tccctccctccctccctccctccctccctcccccagCGCCTGGTTCTGGG
TTCTCTCGGGCTTTCGTCCCACTACCACCTCCTCCTCCTCCCCCTCCTCG
TCCTCCTCCTCCAGCCCCCTCTTCCTCACCGCCTCCATCGTCATGCGgta
cgctgatttgcctccccctctccctccctcccttccttcctccctccctc
cctccctcaagatcataagccacgaagatcacgcactcaccctccctccc
tccctccctccctccctccctccctccctcgttccctccctccctcagCA
CCCGTGACAACGCCCTGGGTTTCGATGTGGAGGGATCGGCGATCCTTGTT
GTGGAAAACCCCGATGACCCCCCGCAGgtaggtatgtaggtagggaggga
gggagggagggctagagggaagggaggggaggggaagggagggaacacag
acacagcagtgtacgaacagcacccctctcctccccccctccctccctcc
agTCCTGGCGCTACACCCAGCGCCGTTTGCCCGGCAGTCACAAGGGCCTC
ACGTGGTCTGCTGCCCTCTTTAATGATGAGGAGGGAGGCTACCTCTATCT
AGTCGGGGTGGCCGGCACAGGCATGGAGGCAAAGCAGgtactcgcccctc
cctccctccctccctccctccttccctccctgcggtcgctcaaaacgctt
cctcccctcccttcctcccttcctccctccctccctccctcagGTCCTCG
CCCGCCTCCCTTTATCCTCCCTCTCCTCCTCCCCTCCCTCCTCCCCTCCC
TCCTTCCCCTCTTCCTCCATGGAAGTATGGGCCCAGGCCTCCCCCCCTTC
CTCCCCCCCCTCCTGGCTCCCGCTCTCCACCCACCTCGCCGCCGGGTCTG
CCTCTACCCTCGTTCCTCTCTTTCCTCCGGGTACGCTGGGCGTCTCCGAA
TGCAGTGTGTACTACCACCCTCATTTGAAGTCATACCTCATGGTCACCCT
CCCGGCCTTTGCCAATGAGgtacgccgtcttcccctccctccctctctcc
ctccctccttccctcgtcccctccccgagtcccctcccttccattcgtta
atccctggagtcattttcctccctcccgccctccctccctccctcagCTC
CTCCTCTGGCGCAGTCCATCTATGACCGGCCCATGGGCCAAAACGCACCT
CGTTAATGTGGAGGAAATGGAGAAGGAATTTCAAAAGATGGAGgtgaggg
aggaagggagggagggagggagggagggagggaatgaacgacttgcattc
atcacccggttgcacgtgtctcatcattccctccctccctccctccctcc
ctccctccctccctcccttctcccagGGCTATCACACGGGCTCCAAAAAC
CGCCTCTTCTACGCCGCCAAATTCCACCCGGAACTCGCCCGCCCTCCCGC
CTGCCCTTCCTCCCGCCCGCCCTCCCGCCTGCCCTTCCCTCCTCCTCTGA
AGGAGGGAGAGCATGAATTAATCCTTACTTACTGTGCAAATGTCCTGGGC
GACTGGCCGGCTCCCTCCGACTATACGCCTCGTTTCCTAAGGGTGGTGCT
GAGGGAGGGCAGGGGCGAGGGCGGGAGGGAGGGAGGGGTGACGGATGCGT
GAGAGCGTGAGACGGGAGGGGAGGGAAGGAGGGAAGGAAGGAAGGAGGGA
GGGAAGGAGGGAGGGGAGGAGGTTGGAAATTCGCATGTAAATATGACGGT
GATTATGATGTCGGTGATGATGAAGCAGAAGAGAGAAGAGGTAGGAAAAG
AAGAAGAAGGGAGGGGAAAAAGATCAGAGACGAAGGAAGGGGAAAAGGAG
TCTTGCCAGTGAAGAGAAGACGAGAAAGAAATTAACGAAAGGTATGGAGG
AAGGGAGGAAGGGATTGGCTCGGGTGTTGAGGCTGTGAAGAGAAGAAGAG
GGCCTCTTCTTCTCTTGTAATTAGGGTTGATCGACCAAACAATGAAGACA
TTGTAATTAGGAGTGAAGGCAGGGAAAGACCACCATTGTAATAAGGATTG
AGCAAGCGATGACTTCGGAAGAGGTAGACGGAGCAGCGAGCAGCGAAGGA
GGGGAGGGAGGGGGGAAGGCACAATCTGCTGACCTGGTCGCATCCACTTT
ACATTTATTTCTTCTCCTTCTCCTTCTTCTTCGTGTGATTTTTCACTCTT
GCCTTGTATTCTTTTTGTCCTCCGTCTCCTTCTTTTCATTCTTCTTTGCC
CTCCTCCTCTTGGTCTCTGTTTATCTACACAACTCCTTCCTTCTTCTCCC
TTCCCACCATC
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protein sequence of NO18G00500.1

>NO18G00500.1-protein ID=NO18G00500.1-protein|Name=NO18G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=758bp
MAAGIDEGVARADCIFLYLSISIVAVLASSRPRRPSSQASGTRHLLSPLL
LISSPVSSLSSSFFPRTATATVTLLLCVTAGLWALTASSSTPSSSPSSSS
SSSSSSSSSSSSSSSSSQPLSPRPVHQSTLAVSTSVDRKRSNSKQQYQQQ
SSSRLPWLFATYSNLSSSSRPSFPSMPSTIPPRPPSSPSSSPSPSFPWRP
LCLPTSQGREGERVWVFRPPQAAPDLQKLFFDARRLALCQDHKGLAWMGA
DVATSLPLSPSTYLWIFGDTLIGKYPEANAWGVKGGVHAFPRQTLGLVHM
TQGSPPSPGDIHFIWRKEGGREGGREGGREEQDKVLLPGVSVAAPEEGGR
ERGREGGREENEKDESHGVISFFEPSPAVLRAAPPSLPPSLPLSLISPAD
KTLYLSPDHSRREEKEEEEEERGREEEDDDGHPRAWFWVLSGFRPTTTSS
SSPSSSSSSSPLFLTASIVMRTRDNALGFDVEGSAILVVENPDDPPQSWR
YTQRRLPGSHKGLTWSAALFNDEEGGYLYLVGVAGTGMEAKQVLARLPLS
SLSSSPPSSPPSFPSSSMEVWAQASPPSSPPSWLPLSTHLAAGSASTLVP
LFPPGTLGVSECSVYYHPHLKSYLMVTLPAFANELLLWRSPSMTGPWAKT
HLVNVEEMEKEFQKMEGYHTGSKNRLFYAAKFHPELARPPACPSSRPPSR
LPFPPPLKEGEHELILTYCANVLGDWPAPSDYTPRFLRVVLREGRGEGGR
EGGVTDA*
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Synonyms
Publications