NO18G00390, NO18G00390 (gene) Nannochloropsis oceanica

Overview
NameNO18G00390
Unique NameNO18G00390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4021
Alignment locationchr18:160590..164610 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:160590..164610 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00390.1NO18G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673903gene_9813Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101425g2gene7207Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00390.1NO18G00390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00390 ID=NO18G00390|Name=NO18G00390|organism=Nannochloropsis oceanica|type=gene|length=4021bp
ATGATTGCTCACAGgtaaggccgtcgtatcggtgcctatacggaggcatg
ggagggggaagggggttgcaatcaacagaggtagtagttccgcacggggt
cggacagcaatgcttaacgcgggcaacggccacagcgatcgatccttcca
ttaattaacgcttttgcctgcctgccgctcctacatcatatcgtgatgct
ctgtaccacggccatcgctaccattataccagacaaattcttacaaagca
taggtttctgtccagatgatgtcttgctgctgccgcttcctgcagtcttg
ccttgttttactcactgtcaaaatgccgcgcccataaacgcacatatacc
ccaccccttaacacagGTATCTGATCATGCCCCAACCACCACCTCCACCA
CCGCCAAGACAAACAAGACGGCGGCGAACCTCCTTTGTCCACGgtgcgtg
cgtattatagtccttgtcccccccaccatcccctttttgtttgctgcata
cgccttcccatcgagcatcccgctgcaatactccaaacctcatacctctt
ccccctattgtatgcccggcctcctttactatcgcgcataataatttcgc
atcatttgtcttatccaccattatctccttccatttctttcccctttctc
tcctcctctacatgacaacagCCCTCCTCCTTCCCCTCGCCCTCTTCCTC
CTCCTCCTTCCCCCCGTCCTTGATGCCACCGCCTTGCCTCGGGCCTTGTT
TCACCACTTTCGCCTCACAATGAATGGACACCGCTGGCTTGCTGACGGAG
GACTATCCGCTATTCTTCTCTCTCTCCCTTCCTCCCCTCCTCCCTCCCAT
CCTCGATCCCTGCTAGCCGCTCCTGCCACTGGTGAGGCTGGTAGCGATGC
TGCTGGTGCGGCGGGAATGAGTGAGAAAATGACGGAGGAAGCAAAAAGAA
TGGCAGAGAATGAGAGGAACTCCAAGACTGCTTCTCTCATCACTCCTCCC
ACCACTGAGGGAGGGAGGGAGGAAGGGCAAGCAGCTGCTGCTGGTGCCGC
TACTTCTCCTGCTGCTCTTGTTGGCAAGACGACTGCCGAAAGCCCAGCCG
AGACTTGCTACCACGCAGTGATGTGCAAGGAGTGGAGGGCAGTGGCAACA
GAAGCAGCAGCAGCAGCAGGAGGAGAGGAGGCGGACGGGGTAGGGGAGGA
AGGGGAGGGGTGGCGCCCGCTGCTTGGAGAAGGAAGGGAGGGAGGGAGGA
TGGAACATCTCACGATGGAGGACGTCCGAGCTTTGCCTCTGGGTGATGAA
GAGAAAAAAAGGAGGAGGAGGAGGAAGGCTGGAGTGAAGAAGGGAGCGAA
GACGGGGGGCATGAGGGAGGAAGGAAGAGATGAGGTAGAGGAGGGGGAGG
AGGAGGGAGGGAAGGAAGGAAGGGTGTTGCTTGATACCACGCCGGCTGTT
GTCAGGCTTCTTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCACTTCTTT
CTCCTTGTTCTCCTCCTCCTCCTCCTCCTCCTCTTCTGTTCTACTCTCTG
ACAAAGCGACGAATCAAACAGAGGAAACAGCAGATAAAGAAGACTCTCTC
TTCTCGTCTTCCCCCTCCTCCTCCTCTTCCTCGCTCCCTTCCTCCTACCT
CCTTCTCCTCTCCGCCCAGGGTGCTTGCGGCCTCCTTCTCAGGTCCATCG
ATGCCTCCCTCCGCCAAGCCCTCGCCCTCCTCGACCGCTTCCCTCCCTCC
CTCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CATCTCCATCCTCTCGGGGCCCTATCTTTGGACCTTCTCCTTTTCGTCGT
CCTCCTCCCTCTCTTCATCCCATCCTTTCTCCCTCCCTTCCTCCCCCTCC
TCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCGTCGTCGTCAATGACGCACCTCGCCAACATCAACGGCAAGATGCTCG
TTTTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCTCAGTGTGGGTCGCAA
TCGTGTGCCGAAAGTCGCCTGCCTTTGATTCGgtaaagaaggaggaaggg
agggcgggcgggagggagggagggctggaatgtttgcacttgctcccttc
cctcttctgacgctgatgacagtcacttactctccctccctccctccctc
cctccctccctccctccttccttgctttccttagCGCTTACCAAGGCCGC
TCGTCTCTCTATCCTTCCAACCCTCGTCACGCCGCCCTCTACATCCGCCC
CCTCCCTCCCTCCCCCCCTCCCTCCCTGCCTGCCTCCGGCCCTCCTGACC
ATCGTCTGCTGCGGGAGACGAGGGAGAGAATCCGGAGGGCAAGAGACGGG
AGGAGGACGAGGGAGAGGGGGAGGAGAGGGTGGTGGTTCTTTGACAGTGG
GAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGAAGGAGGGAGGGAATGGA
GCGTCGGGCAGTATGATGTTTACAGGGTGGGGAGAGAGGGAGGGAAGAAG
GGAGGGAAGGACGGGGGGAGGGAGGGGGAGGTGTTGGAGGCGGTGAGACA
TGCATTTGAGAAGAGGGTAGGGGAGAGGGTGTATGTGCACAGCCGGCCAG
TCGCTCACGCAGTGGAGGAAGGGCAGGAGGGAGGAGCAGGTGCAGCAGGA
GCAGGAGCAGGAGCAGCAGCAGCAGTATCAACAGCAGCAGCATTAACATC
AGCAGCAGGAGCAGCATTAACAGCAGCAGCAGCAGCAGCAACCACACCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTGTCAGTGCCGATGGAAGAGGCCAAGCCCCGTGGGCCATGGGGCGGAAG
gtacgtgcctgtgaagagaaagggagagggtctaagagcgagaaacatcg
agacaggagagagagagagagacagagaaagagagagacagacagagaga
gctgttttgcgtatccctctcttcctcctccttccctcctcctttcctcc
ctccttccattcctccttccctccctccttccctccctccttccccttcc
tacagACATCCTGCTTTTTCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCATCGT
TGTCTAAGGAAGGAGAGTCTCCCACCCTCGAAGACAGCAGCAGCAGCAGC
AGCAACAACAGCGCCAGCAGCAGCAGCAGCAACAGGAGGAGGAGGAGGAA
GACGCGATGGACCGGATCTTCCCTCGATTTGATCTGGCAGGCCGTCATGG
GCGCTGCTGgtacgttttccatcattcccttccttcctccctccctcctc
acggactctccctctcccttcctccctccctcccttcttccctccttccc
ttcctccctctctccttatgaattctccttcctcctctttccccccctcc
ctccctccctccgtcttatggattctccttcctcctcctcccctccctcc
ctcccttcctctctccctccagGTCTCCTCCTTCTTCCCTTCCTGGCCGT
GCTAGGCACCATTTTCGTAGTTGCTCGCTTCGTCCTCTCCCGCGACAACG
ACGACCTCTCTCTTTACGAGGACACCTCCTCCACCCTCTTCCCGCCCTCC
CGCCCTTCCTCCCTCCCTCCCCCCACCCCTCGATCCTACCGCTCCTCGGC
GTCGTCCACCTTTTCCTCTTACACCGTCTGCTCCAGTCACTCCCTCCACC
GCCACCACCCCTGCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCCCTTAC
TCTCCCTACTCCTCTCGGTGCGCCTCTCCCGCATCCCGCAGCCCCGCGTC
CGCCGCAGGAAGACGAGGGCTGGCGAAGGGGAGGGAGGGAGGAAGGCCGG
GGAGGATCAATGGGAGGAAGGTTGTGTGGAAAAAGCCGAGTCCAGCCAAG
TCTTTGGTGATGGAAAGGTGA
back to top

protein sequence of NO18G00390.1

>NO18G00390.1-protein ID=NO18G00390.1-protein|Name=NO18G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=957bp
MIAHRYLIMPQPPPPPPPRQTRRRRTSFVHALLLPLALFLLLLPPVLDAT
ALPRALFHHFRLTMNGHRWLADGGLSAILLSLPSSPPPSHPRSLLAAPAT
GEAGSDAAGAAGMSEKMTEEAKRMAENERNSKTASLITPPTTEGGREEGQ
AAAAGAATSPAALVGKTTAESPAETCYHAVMCKEWRAVATEAAAAAGGEE
ADGVGEEGEGWRPLLGEGREGGRMEHLTMEDVRALPLGDEEKKRRRRRKA
GVKKGAKTGGMREEGRDEVEEGEEEGGKEGRVLLDTTPAVVRLLSSSSSS
SSSSTSFSLFSSSSSSSSSVLLSDKATNQTEETADKEDSLFSSSPSSSSS
SLPSSYLLLLSAQGACGLLLRSIDASLRQALALLDRFPPSLPPSSSSSSS
SSSSSSSISILSGPYLWTFSFSSSSSLSSSHPFSLPSSPSSSSSSSSSSS
SSSSSSSSSSSMTHLANINGKMLVFPSSLPPSLPPQCGSQSCAESRLPLI
RAYQGRSSLYPSNPRHAALYIRPLPPSPPPSLPASGPPDHRLLRETRERI
RRARDGRRTRERGRRGWWFFDSGREGGREGRREEGGREWSVGQYDVYRVG
REGGKKGGKDGGREGEVLEAVRHAFEKRVGERVYVHSRPVAHAVEEGQEG
GAGAAGAGAGAAAAVSTAAALTSAAGAALTAAAAAATTPAAAAAAAAAAA
AAAAAAVSVPMEEAKPRGPWGGRHPAFSPSSSSSSSSSSSSSSSSSSSSS
SSSSLSKEGESPTLEDSSSSSSNNSASSSSSNRRRRRKTRWTGSSLDLIW
QAVMGAAGLLLLPFLAVLGTIFVVARFVLSRDNDDLSLYEDTSSTLFPPS
RPSSLPPPTPRSYRSSASSTFSSYTVCSSHSLHRHHPCPPSLPSSLPPPY
SPYSSRCASPASRSPASAAGRRGLAKGREGGRPGRINGRKVVWKKPSPAK
SLVMER*
back to top
Synonyms
Publications