NO18G00130, NO18G00130 (gene) Nannochloropsis oceanica

Overview
NameNO18G00130
Unique NameNO18G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length345
Alignment locationchr18:53533..53877 -

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Properties
Property NameValue
DescriptionPIF1 helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:53533..53877 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003840DNA_helicase
Homology
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: XP_022549569.1 (uncharacterized protein LOC106398326 [Brassica napus])

HSP 1 Score: 94.0 bits (232), Expect = 3.300e-16
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:    5 DDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKPPQSP 105
            D+TK +PF LR+RQ P+R  +AMTINKSQGQ+ ++V +YLP P F+HGQLYVALS+V     +T++ T      + P  L + N VYK++F  + P  SP
Sbjct: 1245 DETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKQVILYLPKPVFSHGQLYVALSRVTSKAGLTIIKT------EDPHQLKVKNIVYKEIFKGLHPETSP 1337
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: EPS63874.1 (hypothetical protein M569_10907 [Genlisea aurea])

HSP 1 Score: 92.8 bits (229), Expect = 7.400e-16
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:    1 MNTNDDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVF 96
            MN  D+T  VPF   +RQ P+R A+AMTINK+QGQTF++V ++LPSP FAHGQLYVALS+VG P+N+ +     P    P     + NEV+K+ F
Sbjct:   99 MNPEDET-FVPF--TRRQFPLRVAYAMTINKAQGQTFERVGVWLPSPVFAHGQLYVALSRVGDPSNVRIAAAPGPTRCPPD---HVVNEVWKEAF 187
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: XP_013679762.1 (uncharacterized protein LOC106384327 [Brassica napus])

HSP 1 Score: 92.4 bits (228), Expect = 9.600e-16
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:    5 DDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKPPQSP 105
            D+TK +PF LR+RQ P+R  +AMTINKSQGQ+ ++V +YLP P F+HGQLYVALS+V     +T++ T      + P  L + N VYK++F  + P   P
Sbjct: 1245 DETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKQVILYLPKPVFSHGQLYVALSRVTSKAGLTIIKT------EDPHQLKVKNIVYKEIFKGLHPETGP 1337
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: XP_013718458.1 (uncharacterized protein LOC106422178 [Brassica napus])

HSP 1 Score: 92.4 bits (228), Expect = 9.600e-16
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:    5 DDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKPPQSP 105
            D+TK +PF LR+RQ P+R  +AMTINKSQGQ+ ++V +YLP P F+HGQLYVALS+V     +T++ T      + P  L + N VYK++F  + P   P
Sbjct: 1245 DETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKEVILYLPKPVFSHGQLYVALSRVTSKAGLTIIKT------EDPHQLKVKNIVYKEIFKGLHPETGP 1337
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: XP_013651233.2 (ATP-dependent DNA helicase PIF1-like [Brassica napus])

HSP 1 Score: 92.4 bits (228), Expect = 9.600e-16
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:    5 DDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKPPQSP 105
            D+TK +PF LR+RQ P+R  +AMTINKSQGQ+ ++V +YLP P F+HGQLYVALS+V     +T++ T      + P  L + N VYK++F  + P   P
Sbjct:  136 DETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKQVILYLPKPVFSHGQLYVALSRVTSKAGLTIIKT------EDPHQLKVKNIVYKEIFKGLHPETGP 228
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: XP_013720192.1 (uncharacterized protein LOC106423997 [Brassica napus])

HSP 1 Score: 92.0 bits (227), Expect = 1.300e-15
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 0 
Query:    5 DDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKP---PQSPPLQPED 111
            D+TK +PF LR+RQ P+R  +AMTINKSQGQ+ ++V +YLP P F+HGQLYVALS+V     + ++ T    H      L + N VYK++F  + P    Q P  QP D
Sbjct:  203 DETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKEVILYLPKPVFSHGQLYVALSRVTNKAELKIIKTEDSQH------LKVKNIVYKEIFKGLPPAKGKQCPTYQPSD 304
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: AAD25621.1 (Hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 91.3 bits (225), Expect = 2.100e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:   11 PFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVF 96
            PF LR+RQ PVR  +AMTINKSQGQT  +VA+YLP P F+HGQLYVALS+V  P  +T++ T     G+      + N VY++VF
Sbjct: 1160 PFTLRRRQFPVRMCYAMTINKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVLDTSKKKEGK-----YVTNIVYREVF 1239
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: OAP18984.1 (hypothetical protein AXX17_AT1G48910 [Arabidopsis thaliana])

HSP 1 Score: 91.3 bits (225), Expect = 2.100e-15
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:   11 PFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVF 96
            PF LR+RQ PVR  +AMTINKSQGQT  +VA+YLP P F+HGQLYVALS+V  P  +T++ T     G+      + N VY++VF
Sbjct: 1193 PFTLRRRQFPVRMCYAMTINKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVLDTSKKKEGK-----YVTNIVYREVF 1272
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: BAB02227.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 90.9 bits (224), Expect = 2.800e-15
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:   11 PFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVF 96
            PF LR+RQ PVR  +AMT+NKSQGQT  +VA+YLP P F+HGQLYVALS+V  P  +T++ T     G+      + N VY++VF
Sbjct:  529 PFTLRRRQFPVRMCYAMTVNKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVLDTSKKKEGK-----YVTNIVYREVF 608
[Close]
BLAST of NO18G00130 vs. NCBI_GenBank
Match: XP_013615052.1 (PREDICTED: uncharacterized protein LOC106321302, partial [Brassica oleracea var. oleracea])

HSP 1 Score: 90.9 bits (224), Expect = 2.800e-15
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 0 
Query:    5 DDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFAHGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKP 101
            D+TK +PF LR+RQ P+R  +AMTINKSQGQ+ ++V +YLP P F+HGQLYVALS+V     +T++ T      + P  L + N VYK++F  + P
Sbjct: 1245 DETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKEVILYLPKPVFSHGQLYVALSRVTSKAGLTIIKT------EDPHQLKVKNIVYKEIFKGLHP 1333
The following BLAST results are available for this feature:
BLAST of NO18G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022549569.13.300e-1649.00uncharacterized protein LOC106398326 [Brassica nap... [more]
EPS63874.17.400e-1652.63hypothetical protein M569_10907 [Genlisea aurea][more]
XP_013679762.19.600e-1648.00uncharacterized protein LOC106384327 [Brassica nap... [more]
XP_013718458.19.600e-1648.00uncharacterized protein LOC106422178 [Brassica nap... [more]
XP_013651233.29.600e-1648.00ATP-dependent DNA helicase PIF1-like [Brassica nap... [more]
XP_013720192.11.300e-1546.79uncharacterized protein LOC106423997 [Brassica nap... [more]
AAD25621.12.100e-1554.12Hypothetical protein [Arabidopsis thaliana][more]
OAP18984.12.100e-1554.12hypothetical protein AXX17_AT1G48910 [Arabidopsis ... [more]
BAB02227.12.800e-1552.94unnamed protein product [Arabidopsis thaliana][more]
XP_013615052.12.800e-1548.96PREDICTED: uncharacterized protein LOC106321302, p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00130.1NO18G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00130.1NO18G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00130 ID=NO18G00130|Name=NO18G00130|organism=Nannochloropsis oceanica|type=gene|length=345bp
ATGAACACCAACGACGACACCAAGGGCGTACCGTTCATCCTCCGCCAACG
TCAGTGCCCGGTCCGGCCTGCCTTCGCCATGACTATAAACAAATCCCAGG
GGCAGACCTTCCAAAAAGTCGCAATCTACTTGCCGTCCCCGGATTTTGCT
CACGGTCAACTGTATGTCGCGCTTTCGAAAGTAGGAGTTCCCACCAACAT
CACCATGATGGTCACCCACCCTCCTCTGCACGGCCAGCCCCCTCCCGCGC
TTGCCATACCCAATGAAGTCTATAAGCAAGTGTTCATGTACATGAAACCG
CCACAGTCACCACCACTGCAACCGGAAGACGTGATGGAGGTATAA
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protein sequence of NO18G00130.1

>NO18G00130.1-protein ID=NO18G00130.1-protein|Name=NO18G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MNTNDDTKGVPFILRQRQCPVRPAFAMTINKSQGQTFQKVAIYLPSPDFA
HGQLYVALSKVGVPTNITMMVTHPPLHGQPPPALAIPNEVYKQVFMYMKP
PQSPPLQPEDVMEV*
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Synonyms
Publications