NO18G00110, NO18G00110 (gene) Nannochloropsis oceanica

Overview
NameNO18G00110
Unique NameNO18G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr18:50073..51212 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:50073..51212 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002654Glyco_trans_25
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
[Close]
BLAST of NO18G00110 vs. NCBI_GenBank
Match: XP_011132150.1 (putative transmembrane protein [Gregarina niphandrodes] >EZG47684.1 putative transmembrane protein [Gregarina niphandrodes])

HSP 1 Score: 82.0 bits (201), Expect = 2.800e-12
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 0 
Query:   59 FPVYYINMEQSSARRERMELDFGGIWDLRRSPAVDGTDTDMVLQLMGRANYDEIAPSISDE----RRQGTINGGELGCILSHLMAIKRAYLEGNEIAMIVEDDITPLLMPFWTCSLIDVVNEAGNYSTGTWDMVQMAW 193
            FP++YIN+++ S RR  ME  FG       +  V GT+   +  ++ +    E    ++D     RR+     GELG ++ HL AIK+AY   ++  +I+EDD+   L P+W  SL  V ++A  Y  G W  +Q+ W
Sbjct: 1383 FPIFYINLQKQSNRRRYMEETFG-----PSAVRVGGTNGTNLFAVLDKYRIGEPEAFVNDPWGYLRREHQTTPGELGALIGHLDAIKKAYQGHHDTVLIMEDDMGVQLCPYWPASLAVVKSQADIYYPG-WHSIQLQW 1514
[Close]
BLAST of NO18G00110 vs. NCBI_GenBank
Match: XP_011132952.1 (LPS glycosyltransferase [Gregarina niphandrodes] >EZG43864.1 LPS glycosyltransferase [Gregarina niphandrodes])

HSP 1 Score: 74.7 bits (182), Expect = 4.400e-10
Identity = 50/170 (29.41%), Postives = 78/170 (45.88%), Query Frame = 0 
Query:   28 LMALQQLSITRCSELRSDSTLLAGYVNYALPFPVYYINMEQSSARRERMELDFGGIWDLRRSPAVDGTDTDMVLQLMG-----RANYDEIAPSISDERRQGTINGGELGCILSHLMAIKRAYLEGNEIAMIVEDDITPLLMPFWTCSLIDVVNEAGNYSTGTWDMVQMAW 193
            ++AL +L      ++ SD     G        P YY+N+++S  RRE ME  F     +R   AVDG D   V+  +      R      A      +R      GELGC  S L A+K+ Y +G+E+A++ EDD+   +  FWT  L  +V +        W ++++ W
Sbjct:    8 VIALPELHTIESQDMFSDE---FGPCEILWNLPFYYVNLDRSVKRREYMERTFPHATRIR---AVDGRDPSEVMSAINFPPDERGRGWSPAEFAHYTKRVFGATPGELGCYASRLDALKQMYEDGHELALVGEDDVDLNMCRFWTSDLARIVRQV-QQEDADWHLLRLQW 170
[Close]
BLAST of NO18G00110 vs. NCBI_GenBank
Match: XP_004989890.1 (hypothetical protein PTSG_12837 [Salpingoeca rosetta] >EGD78214.1 hypothetical protein PTSG_12837 [Salpingoeca rosetta])

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-9
Identity = 41/136 (30.15%), Postives = 71/136 (52.21%), Query Frame = 0 
Query:   59 FPVYYINMEQSSARRERMELDFGGIWDLRRSPAVDGTDTDMVLQ-LMGRANYDE--IAPSISDERRQGTINGGELGCILSHLMAIKRAYLEGNEIAMIVEDDITPLLMPFWTCSLIDVVNEAGNYSTGTWDMVQMA 192
            F V YI+ +    R+ +ME    G+W  +R PA+DGT  + VLQ L G     +  +   ++D+R+   ++  E    +SHL A+ +  +      +++EDD+T  L+PFWT +L   V +        W +V++A
Sbjct:  162 FTVLYISRDVDVVRQGQMEEGVAGLWGAKRIPAIDGTHQENVLQRLAGTPQQAQATLQNLVTDKRKPAKVHLKEAAVSISHLDALHQIAVSDRPYGLVLEDDVTIDLLPFWTQTLQAFVQK----MPADWKLVRLA 293
The following BLAST results are available for this feature:
BLAST of NO18G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_011132150.12.800e-1233.33putative transmembrane protein [Gregarina niphandr... [more]
XP_011132952.14.400e-1029.41LPS glycosyltransferase [Gregarina niphandrodes] >... [more]
XP_004989890.12.200e-930.15hypothetical protein PTSG_12837 [Salpingoeca roset... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00110.1NO18G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605418gene_9780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00110.1NO18G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00110 ID=NO18G00110|Name=NO18G00110|organism=Nannochloropsis oceanica|type=gene|length=1140bp
ATGGCGCCATCGATCCTCCTGTTTGCTCCAGGTACCCTCACTACCGCATT
TCTCTTCATGTTCTTTACGTGGACATTGTTCCTCATGGCACTGCAACAAT
TATCTATAACCCGATGTTCTGAATTAAGgtacgtccagagaagatactcc
agctctcaacatgtctgaccgtgcctgggcaatcaccttattctacagAT
CAGACTCTACCCTTCTTGCTGGTTACGTTAATTACGCACTTCCCTTCCCA
GTGTATTATATCAACATGGAGCAGAGCTCTGCGCGGCGAGAGAGGATGGA
GCTCGATTTCGGCGGTATATGGGACCTACGACGGAGCCCTGCCGTGGACG
GAACGGATACAGATATGGTGCTCCAGCTCATGGGCCGAGCAAACTACGAC
GAAATAGCTCCGTCCATCTCAGATGAAAGACGTCAAGGCACTATAAATGG
CGGAGAGCTTGGCTGTATACTATCGCATCTCATGGCGATAAAACGCGCAT
ATCTGGAAGGGAACGAGATCGCGATGATTGTGGAAGATGATATCACGCCC
TTACTCATgttagtgctcgtaggatggctaacttaaatttctacttcttg
cccttacatgcacattatattcactccacctgtagGCCATTTTGGACATG
TTCACTCATTGATGTAGTCAACGAAGCAGGAAACTATTCAACGGGCACGT
GGGATATGGTTCAAATGGCTTGGATTTGGGGCATGGATAAGACCTTGTAT
GATAGAGgtgcgcataattttggtccacgccgtcatatcttgcaaacacg
gtttcagttcggcacgtcggcgtatgtcatttccaaaagaggaatggaaa
agatacttgatgcctattttactgacagtacagagaacggacagatttgt
cttcgaagagggggcgaccaagccgagctctacatttacggtgctatctc
gaatttatttgttgctgtgccctcatttttcactattgagggatctgata
ctaccatttcaacagGAGAAGAAAGTCAACTGCGCCTGTCCAGCCATCGG
GAGTCCAACAGCATCCATATCAAGACTGCGTTTGACCTTTTTCACGAAAT
GAAGAAGGAAAAGCTCGCCTCCGAGGAAAAATCAGAATGA
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protein sequence of NO18G00110.1

>NO18G00110.1-protein ID=NO18G00110.1-protein|Name=NO18G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MAPSILLFAPGTLTTAFLFMFFTWTLFLMALQQLSITRCSELRSDSTLLA
GYVNYALPFPVYYINMEQSSARRERMELDFGGIWDLRRSPAVDGTDTDMV
LQLMGRANYDEIAPSISDERRQGTINGGELGCILSHLMAIKRAYLEGNEI
AMIVEDDITPLLMPFWTCSLIDVVNEAGNYSTGTWDMVQMAWIWGMDKTL
YDRGEESQLRLSSHRESNSIHIKTAFDLFHEMKKEKLASEEKSE*
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Synonyms
Publications