NO18G00080, NO18G00080 (gene) Nannochloropsis oceanica

Overview
NameNO18G00080
Unique NameNO18G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length686
Alignment locationchr18:42433..43118 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:42433..43118 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO18G00080 vs. NCBI_GenBank
Match: CBJ33761.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11
Identity = 49/175 (28.00%), Postives = 78/175 (44.57%), Query Frame = 0
Query:    2 LVSIWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFD--------------------------DVQRKMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTELRKLKQTVLDLYTLVRAVNIVL 151
            +V  WV+  L  +G++ ++  GAV+D+GSDV++  +S+     PWEWC PH LNRA +D  G T+      + +  D                          D   +  G   KL      RW S  + L  VL  +  + + Y    +   LR  K+ V ++YT++ AV  V+
Sbjct:  197 VVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRK-GVSQ---AWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGSTAKLSQAVAQRWISICKMLLRVLERWDALKKIYLDSDKEFPLRSRKKEVEEVYTIINAVKAVV 367          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: CBJ27010.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.8 bits (177), Expect = 1.200e-9
Identity = 47/175 (26.86%), Postives = 75/175 (42.86%), Query Frame = 0
Query:    2 LVSIWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFD--------------------------DVQRKMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTELRKLKQTVLDLYTLVRAVNIVL 151
            +V  WV+  L  +G++ ++  GAV+D+GSDV++  +S+     PWEWC PH LNRA +D  G T+      + +  D                          D   +  G   KL      RW      L  VL  +  + + Y    +   LR  K+ V ++YT++  V  V+
Sbjct:  197 VVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRK-GVSQ---AWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGSTAKLSQAVAQRWIRICRMLLRVLERWDALKKFYLDSDKEFPLRSRKKEVEEVYTIINGVKAVV 367          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: POM67259.1 (Hypothetical protein PHPALM_16785 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 70.5 bits (171), Expect = 6.100e-9
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0
Query:    5 IWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETS--------TAKDSEVLFDDVQRKMYGQALKLVNFAMNRWSSAEECLRCVLTEYKP 116
            +W++S L D+GL   +F G+ +DSG DVK   + +N LGL WEWC PH++N +   A G T             K S+ ++D V     G  L ++   + + SS +      L  YKP
Sbjct:  194 MWLRSILGDFGLNPSDFFGSTTDSGPDVK--WVMRNGLGLRWEWCIPHMVNASTKMACGLTRKPFNPAMTDLLNKMSQTVYDTVSNSTMGDLLPVLMIMLGQGSSTK------LVCYKP 304          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: XP_009533201.1 (hypothetical protein PHYSODRAFT_337267 [Phytophthora sojae] >EGZ10456.1 hypothetical protein PHYSODRAFT_337267 [Phytophthora sojae])

HSP 1 Score: 67.0 bits (162), Expect = 6.800e-8
Identity = 49/177 (27.68%), Postives = 76/177 (42.94%), Query Frame = 0
Query:    6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWT-----------ETSTAKDSEVLFDDVQRKMY---------GQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTE--------------LRKLKQTVLDLYTLVRAVNI 149
            W+K  L D+GL   +F GA +D G DVK   + ++ L L WEWC PHL N A  +A G T              T    +V   +V   +Y         G+  KLV++  +R+    +  R ++  +      Y  R+R+ E               +KL + +L L   + AVN+
Sbjct:  168 WLKQILGDFGLTTADFFGATTDGGPDVK--WMMESGLRLQWEWCWPHLTNAATKEAFGMTGDRNPGMRSLLSKVTVTIYQVRSVEVMGSLYAELVDALGVGKEWKLVDYKPHRFMGLTQVFRRIVKHWDVFELWYEERTRKFERDGKISPNPFPLSGQKKLMEQLLSLLVPISAVNV 342          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: POM73980.1 (Hypothetical protein PHPALM_9113, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.9 bits (159), Expect = 1.500e-7
Identity = 42/145 (28.97%), Postives = 67/145 (46.21%), Query Frame = 0
Query:    6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFDDVQR------------------------KMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRR 127
            W++    D+GLK+ NF GA SD+G DVK   +SK  L L WEWC  H+ + A   + G    ++A ++  + D V R                        K  G + +LV ++ +R+ S    L  +L ++  I   Y  R+R+
Sbjct:  256 WLEHMFEDFGLKLCNFYGATSDAGGDVK-SMLSKE-LNLNWEWCFAHMAHAATKASCGVNGAASAAENPEMADLVARIARTIFQIKRVSTMGNLFEELCKSKAKGASSRLVGYSTSRFLSLTNVLESILLKWPAITAWYEERARQ 398          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: XP_009524801.1 (hypothetical protein PHYSODRAFT_329939 [Phytophthora sojae] >EGZ22084.1 hypothetical protein PHYSODRAFT_329939 [Phytophthora sojae])

HSP 1 Score: 64.7 bits (156), Expect = 3.400e-7
Identity = 49/186 (26.34%), Postives = 80/186 (43.01%), Query Frame = 0
Query:    6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFDDVQRKMY---------------------GQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTE--------------LRKLKQTVLDLYTLVRAVNIVLKDMQSN 157
            W+K  L+D+GL   +F GA +  G DVK   + ++ L L WEWC PHL N A   A G T   T  D   L   V   +Y                     G+  KLV++  +R+    +  R ++  ++ +   Y  R+R+ E               ++L + +L L   + AVN+  +  ++N
Sbjct:   45 WLKQILADFGLTTADFFGATTGGGPDVK--WMMESGLRLQWEWCWPHLTNAATKAAFGMTGDRT-PDMRSLLSKVTTTIYQVRSAEVVGSLYAELVDALGIGKEKKLVDYKPHRFMGLTQVFRRIVKRWEVLELWYEERTRKFERDRKALPNPFPLSGKKQLMEQLLSLLIPIFAVNVKSQAEKAN 227          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: POM64344.1 (Hypothetical protein PHPALM_20135 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 63.9 bits (154), Expect = 5.700e-7
Identity = 41/145 (28.28%), Postives = 67/145 (46.21%), Query Frame = 0
Query:    6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFDDVQR------------------------KMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRR 127
            W++    D+GLK+ NF  A SD+G DVK   +SK  L L WEWC  H+++ A   + G    ++A ++  + D V R                        K  G + +LV ++ +R+ S    L  +L ++  I   Y  R+R+
Sbjct:  252 WLEHMFEDFGLKLCNFYDATSDAGGDVK-SMLSKE-LNLNWEWCFAHMVHAATKASCGVNGAASAAENPEMADLVARIARTIFQIKRVSTMGNLFEELCKSKAKGASSRLVGYSTSRFLSLTNVLESILLKWPAITAWYEKRARQ 394          
BLAST of NO18G00080 vs. NCBI_GenBank
Match: XP_009537895.1 (hypothetical protein PHYSODRAFT_375549, partial [Phytophthora sojae] >EGZ07131.1 hypothetical protein PHYSODRAFT_375549, partial [Phytophthora sojae])

HSP 1 Score: 63.5 bits (153), Expect = 7.500e-7
Identity = 43/150 (28.67%), Postives = 66/150 (44.00%), Query Frame = 0
Query:    6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTE-TSTAKDSE--VLFDDVQRKMY---------------------GQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTELRK 132
            W+   L+D+GL V +F GA +D G DV+    S   L L WEWC PHL N A   A G T   + +K+ E   L   V R +Y                     G+  KL+++  +R+ S       ++  +  +   Y  R+R+ +  K
Sbjct:  201 WIIQILADFGLTVADFFGATTDGGPDVQHMMTSN--LMLSWEWCMPHLTNAATKAAFGITRIVAKSKNPERLQLLKKVTRTVYQVRTVEVMGDLYKQLVRLLGVGKEKKLIDYKPHRFMSLTRVFERIVKHWNVLCLWYEERARKADRDK 348          
The following BLAST results are available for this feature:
BLAST of NO18G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
CBJ33761.16.500e-1128.00conserved unknown protein [Ectocarpus siliculosus][more]
CBJ27010.11.200e-926.86conserved unknown protein [Ectocarpus siliculosus][more]
POM67259.16.100e-933.61Hypothetical protein PHPALM_16785 [Phytophthora pa... [more]
XP_009533201.16.800e-827.68hypothetical protein PHYSODRAFT_337267 [Phytophtho... [more]
POM73980.11.500e-728.97Hypothetical protein PHPALM_9113, partial [Phytoph... [more]
XP_009524801.13.400e-726.34hypothetical protein PHYSODRAFT_329939 [Phytophtho... [more]
POM64344.15.700e-728.28Hypothetical protein PHPALM_20135 [Phytophthora pa... [more]
XP_009537895.17.500e-728.67hypothetical protein PHYSODRAFT_375549, partial [P... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00080.1NO18G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00080.1NO18G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00080 ID=NO18G00080|Name=NO18G00080|organism=Nannochloropsis oceanica|type=gene|length=686bp
ATGTTGGTGTCCATCTGGGTGAAGTCTTGCCTCAGCGACTATGGCCTCAA
AGTCGATAATTTTGTGGGTGCTGTGAGCGATAGTGGGAGCGACGTCAAGC
GGTGCTGCATATCCAAAAATTGTTTGGGGCTGCCTTGGGAGTGGTGTGGA
CCGCACTTATTAAATAGAGCGCTTGTGGATGCGCTGGGATGGACAGAGAC
CTCGACGGCGAAGGACAGTGAAGgtgagggagggagggagggagggaggg
atggagggatggagggagagagggacggacggacggacggaaaatgagag
gggcaagagatattttgatggaggggctgaatgtagtctaacacatttcc
aaatccaccaccatgaaagTTTTGTTTGATGATGTGCAGCGCAAAATGTA
TGGTCAAGCTTTGAAGCTCGTCAATTTTGCGATGAATCGGTGGAGTTCTG
CGGAGGAATGTTTGCGATGCGTTTTGACGGAATACAAGCCCATCCTGAGG
ACTTATCATTCTCGGAGCAGGCGCACGGAGCTGAGGAAATTGAAACAGAC
TGTGCTTGACCTGTATACCTTGGTCCGTGCGGTGAACATTGTGCTGAAGG
ATATGCAGAGCAATTCACCCACATCGGGGCCCTGCTTCGTATTGGGAATT
GCTGAGCCCCTCGCGAGCGAGCTATGTTTGGAGTAG
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protein sequence of NO18G00080.1

>NO18G00080.1-protein ID=NO18G00080.1-protein|Name=NO18G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MLVSIWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCG
PHLLNRALVDALGWTETSTAKDSEVLFDDVQRKMYGQALKLVNFAMNRWS
SAEECLRCVLTEYKPILRTYHSRSRRTELRKLKQTVLDLYTLVRAVNIVL
KDMQSNSPTSGPCFVLGIAEPLASELCLE*
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Synonyms
Publications