NO18G00080, NO18G00080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO18G00080 vs. NCBI_GenBank
Match: CBJ33761.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.0 bits (188), Expect = 6.500e-11 Identity = 49/175 (28.00%), Postives = 78/175 (44.57%), Query Frame = 0 Query: 2 LVSIWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFD--------------------------DVQRKMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTELRKLKQTVLDLYTLVRAVNIVL 151 +V WV+ L +G++ ++ GAV+D+GSDV++ +S+ PWEWC PH LNRA +D G T+ + + D D + G KL RW S + L VL + + + Y + LR K+ V ++YT++ AV V+ Sbjct: 197 VVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRK-GVSQ---AWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGSTAKLSQAVAQRWISICKMLLRVLERWDALKKIYLDSDKEFPLRSRKKEVEEVYTIINAVKAVV 367
BLAST of NO18G00080 vs. NCBI_GenBank
Match: CBJ27010.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.8 bits (177), Expect = 1.200e-9 Identity = 47/175 (26.86%), Postives = 75/175 (42.86%), Query Frame = 0 Query: 2 LVSIWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFD--------------------------DVQRKMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTELRKLKQTVLDLYTLVRAVNIVL 151 +V WV+ L +G++ ++ GAV+D+GSDV++ +S+ PWEWC PH LNRA +D G T+ + + D D + G KL RW L VL + + + Y + LR K+ V ++YT++ V V+ Sbjct: 197 VVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRK-GVSQ---AWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGSTAKLSQAVAQRWIRICRMLLRVLERWDALKKFYLDSDKEFPLRSRKKEVEEVYTIINGVKAVV 367
BLAST of NO18G00080 vs. NCBI_GenBank
Match: POM67259.1 (Hypothetical protein PHPALM_16785 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 70.5 bits (171), Expect = 6.100e-9 Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0 Query: 5 IWVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETS--------TAKDSEVLFDDVQRKMYGQALKLVNFAMNRWSSAEECLRCVLTEYKP 116 +W++S L D+GL +F G+ +DSG DVK + +N LGL WEWC PH++N + A G T K S+ ++D V G L ++ + + SS + L YKP Sbjct: 194 MWLRSILGDFGLNPSDFFGSTTDSGPDVK--WVMRNGLGLRWEWCIPHMVNASTKMACGLTRKPFNPAMTDLLNKMSQTVYDTVSNSTMGDLLPVLMIMLGQGSSTK------LVCYKP 304
BLAST of NO18G00080 vs. NCBI_GenBank
Match: XP_009533201.1 (hypothetical protein PHYSODRAFT_337267 [Phytophthora sojae] >EGZ10456.1 hypothetical protein PHYSODRAFT_337267 [Phytophthora sojae]) HSP 1 Score: 67.0 bits (162), Expect = 6.800e-8 Identity = 49/177 (27.68%), Postives = 76/177 (42.94%), Query Frame = 0 Query: 6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWT-----------ETSTAKDSEVLFDDVQRKMY---------GQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTE--------------LRKLKQTVLDLYTLVRAVNI 149 W+K L D+GL +F GA +D G DVK + ++ L L WEWC PHL N A +A G T T +V +V +Y G+ KLV++ +R+ + R ++ + Y R+R+ E +KL + +L L + AVN+ Sbjct: 168 WLKQILGDFGLTTADFFGATTDGGPDVK--WMMESGLRLQWEWCWPHLTNAATKEAFGMTGDRNPGMRSLLSKVTVTIYQVRSVEVMGSLYAELVDALGVGKEWKLVDYKPHRFMGLTQVFRRIVKHWDVFELWYEERTRKFERDGKISPNPFPLSGQKKLMEQLLSLLVPISAVNV 342
BLAST of NO18G00080 vs. NCBI_GenBank
Match: POM73980.1 (Hypothetical protein PHPALM_9113, partial [Phytophthora palmivora var. palmivora]) HSP 1 Score: 65.9 bits (159), Expect = 1.500e-7 Identity = 42/145 (28.97%), Postives = 67/145 (46.21%), Query Frame = 0 Query: 6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFDDVQR------------------------KMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRR 127 W++ D+GLK+ NF GA SD+G DVK +SK L L WEWC H+ + A + G ++A ++ + D V R K G + +LV ++ +R+ S L +L ++ I Y R+R+ Sbjct: 256 WLEHMFEDFGLKLCNFYGATSDAGGDVK-SMLSKE-LNLNWEWCFAHMAHAATKASCGVNGAASAAENPEMADLVARIARTIFQIKRVSTMGNLFEELCKSKAKGASSRLVGYSTSRFLSLTNVLESILLKWPAITAWYEERARQ 398
BLAST of NO18G00080 vs. NCBI_GenBank
Match: XP_009524801.1 (hypothetical protein PHYSODRAFT_329939 [Phytophthora sojae] >EGZ22084.1 hypothetical protein PHYSODRAFT_329939 [Phytophthora sojae]) HSP 1 Score: 64.7 bits (156), Expect = 3.400e-7 Identity = 49/186 (26.34%), Postives = 80/186 (43.01%), Query Frame = 0 Query: 6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFDDVQRKMY---------------------GQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTE--------------LRKLKQTVLDLYTLVRAVNIVLKDMQSN 157 W+K L+D+GL +F GA + G DVK + ++ L L WEWC PHL N A A G T T D L V +Y G+ KLV++ +R+ + R ++ ++ + Y R+R+ E ++L + +L L + AVN+ + ++N Sbjct: 45 WLKQILADFGLTTADFFGATTGGGPDVK--WMMESGLRLQWEWCWPHLTNAATKAAFGMTGDRT-PDMRSLLSKVTTTIYQVRSAEVVGSLYAELVDALGIGKEKKLVDYKPHRFMGLTQVFRRIVKRWEVLELWYEERTRKFERDRKALPNPFPLSGKKQLMEQLLSLLIPIFAVNVKSQAEKAN 227
BLAST of NO18G00080 vs. NCBI_GenBank
Match: POM64344.1 (Hypothetical protein PHPALM_20135 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 63.9 bits (154), Expect = 5.700e-7 Identity = 41/145 (28.28%), Postives = 67/145 (46.21%), Query Frame = 0 Query: 6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTETSTAKDSEVLFDDVQR------------------------KMYGQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRR 127 W++ D+GLK+ NF A SD+G DVK +SK L L WEWC H+++ A + G ++A ++ + D V R K G + +LV ++ +R+ S L +L ++ I Y R+R+ Sbjct: 252 WLEHMFEDFGLKLCNFYDATSDAGGDVK-SMLSKE-LNLNWEWCFAHMVHAATKASCGVNGAASAAENPEMADLVARIARTIFQIKRVSTMGNLFEELCKSKAKGASSRLVGYSTSRFLSLTNVLESILLKWPAITAWYEKRARQ 394
BLAST of NO18G00080 vs. NCBI_GenBank
Match: XP_009537895.1 (hypothetical protein PHYSODRAFT_375549, partial [Phytophthora sojae] >EGZ07131.1 hypothetical protein PHYSODRAFT_375549, partial [Phytophthora sojae]) HSP 1 Score: 63.5 bits (153), Expect = 7.500e-7 Identity = 43/150 (28.67%), Postives = 66/150 (44.00%), Query Frame = 0 Query: 6 WVKSCLSDYGLKVDNFVGAVSDSGSDVKRCCISKNCLGLPWEWCGPHLLNRALVDALGWTE-TSTAKDSE--VLFDDVQRKMY---------------------GQALKLVNFAMNRWSSAEECLRCVLTEYKPILRTYHSRSRRTELRK 132 W+ L+D+GL V +F GA +D G DV+ S L L WEWC PHL N A A G T + +K+ E L V R +Y G+ KL+++ +R+ S ++ + + Y R+R+ + K Sbjct: 201 WIIQILADFGLTVADFFGATTDGGPDVQHMMTSN--LMLSWEWCMPHLTNAATKAAFGITRIVAKSKNPERLQLLKKVTRTVYQVRTVEVMGDLYKQLVRLLGVGKEKKLIDYKPHRFMSLTRVFERIVKHWNVLCLWYEERARKADRDK 348 The following BLAST results are available for this feature:
BLAST of NO18G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 8
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G00080 ID=NO18G00080|Name=NO18G00080|organism=Nannochloropsis oceanica|type=gene|length=686bpback to top protein sequence of NO18G00080.1 >NO18G00080.1-protein ID=NO18G00080.1-protein|Name=NO18G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bpback to top Synonyms
Publications
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