NO17G02900, NO17G02900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G02900 vs. NCBI_GenBank
Match: EWM24115.1 (expressed unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 255.8 bits (652), Expect = 1.300e-64 Identity = 136/215 (63.26%), Postives = 161/215 (74.88%), Query Frame = 0 Query: 10 SMSMLSYFFGLCLLI-LASTTIHAFVPSSPAPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGPQSLSGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVKLR 224 S +M S+F+ L L I +I+AFVPS+PAP A+GPQS++G SLRGFTKVL+VG+ELA+AEGSQKAVGPLKDDK+LLLIRRK G +SAIDANCGRCKFPLLKGK+SEDP++ED++DKGIITCPLCAVRFSLA+GLVTGA+AD V+Q+VSASFFSKQIASGLKTY+ +A TDG VY KLR Sbjct: 25 SGAMRSFFYLLYLCIFFVVASINAFVPSTPAP---VPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 236
BLAST of NO17G02900 vs. NCBI_GenBank
Match: XP_005853669.1 (hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526] >EKU22693.1 hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 255.0 bits (650), Expect = 2.200e-64 Identity = 135/212 (63.68%), Postives = 159/212 (75.00%), Query Frame = 0 Query: 13 MLSYFFGLCLLI-LASTTIHAFVPSSPAPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGPQSLSGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVKLR 224 M S+F+ L L I +I+AFVPS+PAP A+GPQS++G SLRGFTKVL+VG+ELA+AEGSQKAVGPLKDDK+LLLIRRK G +SAIDANCGRCKFPLLKGK+SEDP++ED++DKGIITCPLCAVRFSLA+GLVTGA+AD V+Q+VSASFFSKQIASGLKTY+ +A TDG VY KLR Sbjct: 1 MRSFFYLLYLCIFFVVASINAFVPSTPAP---VPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 209
BLAST of NO17G02900 vs. NCBI_GenBank
Match: CBJ48853.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 70.1 bits (170), Expect = 9.900e-9 Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0 Query: 93 KVLEVGTELAEAE-GSQKAV-GPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKI--------SED--PTIEDEDDKGI-ITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVKL 223 K L+V +E E GS K V G K + + + G A+ CGRCKFPL+ GK+ +ED P +E + + I I CPLC F+L TG + G + G+ Q + + S+ A + T+ + G V V++ Sbjct: 74 KWLQVLDSTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGEIAGEQPKGLAQVLVSKVVSQTPAESITTHQAQVLSTGAVVVRV 216
BLAST of NO17G02900 vs. NCBI_GenBank
Match: XP_024403560.1 (uncharacterized protein LOC112295815 [Physcomitrella patens]) HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7 Identity = 46/141 (32.62%), Postives = 69/141 (48.94%), Query Frame = 0 Query: 84 SGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKG--IITCPLCAVRFSLATG-LVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVK 222 S +S G+ +VL TE +G KA+ + ++ +L++R + AI ANC CKFP+++G +S D +G I CPLC +FSL G +V DG + + K+ K YS + G VYVK Sbjct: 140 SDSSSDGWVQVL---TEAELPDGKNKAI--IYNNAGYVLVKRD-NELYAIQANCTSCKFPVIEGTVSVAEAASDGPSQGETQIECPLCHTKFSLEDGRVVEYCPKDGPLAWAIGTLKQKEAPVPAKVYSARISKSGRVYVK 274
BLAST of NO17G02900 vs. NCBI_GenBank
Match: PNR33890.1 (hypothetical protein PHYPA_023706 [Physcomitrella patens]) HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7 Identity = 46/141 (32.62%), Postives = 69/141 (48.94%), Query Frame = 0 Query: 84 SGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKG--IITCPLCAVRFSLATG-LVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVK 222 S +S G+ +VL TE +G KA+ + ++ +L++R + AI ANC CKFP+++G +S D +G I CPLC +FSL G +V DG + + K+ K YS + G VYVK Sbjct: 89 SDSSSDGWVQVL---TEAELPDGKNKAI--IYNNAGYVLVKRD-NELYAIQANCTSCKFPVIEGTVSVAEAASDGPSQGETQIECPLCHTKFSLEDGRVVEYCPKDGPLAWAIGTLKQKEAPVPAKVYSARISKSGRVYVK 223
BLAST of NO17G02900 vs. NCBI_GenBank
Match: GAQ78230.1 (hypothetical protein KFL_000090750 [Klebsormidium nitens]) HSP 1 Score: 63.5 bits (153), Expect = 9.300e-7 Identity = 47/135 (34.81%), Postives = 65/135 (48.15%), Query Frame = 0 Query: 87 SLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKG-IITCPLCAVRFSLATGLVTG-AKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVY 220 SL G+T EV L+ EG+ KA K + Y+++ + + IDANC CKFP+++GK++ D KG I CPLC +FSL G V DG MQ + + K K Y + G VY Sbjct: 93 SLEGWT---EVAPSLSVEEGTNKAT-IHKGEGYVVI--KSGDELYGIDANCASCKFPVIEGKVT-----TAADGKGPQIECPLCHSKFSLLDGTVLEYCPKDGPMQWIVGTIKEKAPRENTKVYPARMSRSGRVY 216
BLAST of NO17G02900 vs. NCBI_GenBank
Match: PTQ49617.1 (hypothetical protein MARPO_0002s0098 [Marchantia polymorpha]) HSP 1 Score: 63.5 bits (153), Expect = 9.300e-7 Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 0 Query: 105 EGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIITCPLCAVRFSLATGLVTG-AKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVK 222 EG KA+ L+D++ +L++R + I ANC C+FP++ GK+ + E D I CPLC +FS+ G V DG +Q + SK K Y T + G +YVK Sbjct: 160 EGKNKAI--LRDNEGYVLVQR-GSLLYTIKANCTTCQFPMIDGKVE----LVGEGDDLTIECPLCHSKFSVVDGEVAEYCPKDGPLQWFVGTLKSKTEPMAAKVYPTRMSNSGRIYVK 270 The following BLAST results are available for this feature:
BLAST of NO17G02900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G02900 ID=NO17G02900|Name=NO17G02900|organism=Nannochloropsis oceanica|type=gene|length=2059bpback to top protein sequence of NO17G02900.1 >NO17G02900.1-protein ID=NO17G02900.1-protein|Name=NO17G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bpback to top protein sequence of NO17G02900.2 >NO17G02900.2-protein ID=NO17G02900.2-protein|Name=NO17G02900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bpback to top Synonyms
Publications
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