NO17G02900, NO17G02900 (gene) Nannochloropsis oceanica

Overview
NameNO17G02900
Unique NameNO17G02900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2059
Alignment locationchr17:845750..847808 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:845750..847808 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036922Rieske_2Fe-2S_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO17G02900 vs. NCBI_GenBank
Match: EWM24115.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 1.300e-64
Identity = 136/215 (63.26%), Postives = 161/215 (74.88%), Query Frame = 0
Query:   10 SMSMLSYFFGLCLLI-LASTTIHAFVPSSPAPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGPQSLSGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVKLR 224
            S +M S+F+ L L I     +I+AFVPS+PAP                                    A+GPQS++G SLRGFTKVL+VG+ELA+AEGSQKAVGPLKDDK+LLLIRRK G +SAIDANCGRCKFPLLKGK+SEDP++ED++DKGIITCPLCAVRFSLA+GLVTGA+AD V+Q+VSASFFSKQIASGLKTY+ +A TDG VY KLR
Sbjct:   25 SGAMRSFFYLLYLCIFFVVASINAFVPSTPAP---VPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 236          
BLAST of NO17G02900 vs. NCBI_GenBank
Match: XP_005853669.1 (hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526] >EKU22693.1 hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 255.0 bits (650), Expect = 2.200e-64
Identity = 135/212 (63.68%), Postives = 159/212 (75.00%), Query Frame = 0
Query:   13 MLSYFFGLCLLI-LASTTIHAFVPSSPAPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGPQSLSGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVKLR 224
            M S+F+ L L I     +I+AFVPS+PAP                                    A+GPQS++G SLRGFTKVL+VG+ELA+AEGSQKAVGPLKDDK+LLLIRRK G +SAIDANCGRCKFPLLKGK+SEDP++ED++DKGIITCPLCAVRFSLA+GLVTGA+AD V+Q+VSASFFSKQIASGLKTY+ +A TDG VY KLR
Sbjct:    1 MRSFFYLLYLCIFFVVASINAFVPSTPAP---VPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 209          
BLAST of NO17G02900 vs. NCBI_GenBank
Match: CBJ48853.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.1 bits (170), Expect = 9.900e-9
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query:   93 KVLEVGTELAEAE-GSQKAV-GPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKI--------SED--PTIEDEDDKGI-ITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVKL 223
            K L+V    +E E GS K V G  K +  +  +    G   A+   CGRCKFPL+ GK+        +ED  P +E + +  I I CPLC   F+L TG + G +  G+ Q + +   S+  A  + T+     + G V V++
Sbjct:   74 KWLQVLDSTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGEIAGEQPKGLAQVLVSKVVSQTPAESITTHQAQVLSTGAVVVRV 216          
BLAST of NO17G02900 vs. NCBI_GenBank
Match: XP_024403560.1 (uncharacterized protein LOC112295815 [Physcomitrella patens])

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7
Identity = 46/141 (32.62%), Postives = 69/141 (48.94%), Query Frame = 0
Query:   84 SGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKG--IITCPLCAVRFSLATG-LVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVK 222
            S +S  G+ +VL   TE    +G  KA+  + ++   +L++R    + AI ANC  CKFP+++G +S      D   +G   I CPLC  +FSL  G +V     DG +     +   K+     K YS   +  G VYVK
Sbjct:  140 SDSSSDGWVQVL---TEAELPDGKNKAI--IYNNAGYVLVKRD-NELYAIQANCTSCKFPVIEGTVSVAEAASDGPSQGETQIECPLCHTKFSLEDGRVVEYCPKDGPLAWAIGTLKQKEAPVPAKVYSARISKSGRVYVK 274          
BLAST of NO17G02900 vs. NCBI_GenBank
Match: PNR33890.1 (hypothetical protein PHYPA_023706 [Physcomitrella patens])

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7
Identity = 46/141 (32.62%), Postives = 69/141 (48.94%), Query Frame = 0
Query:   84 SGNSLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKG--IITCPLCAVRFSLATG-LVTGAKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVK 222
            S +S  G+ +VL   TE    +G  KA+  + ++   +L++R    + AI ANC  CKFP+++G +S      D   +G   I CPLC  +FSL  G +V     DG +     +   K+     K YS   +  G VYVK
Sbjct:   89 SDSSSDGWVQVL---TEAELPDGKNKAI--IYNNAGYVLVKRD-NELYAIQANCTSCKFPVIEGTVSVAEAASDGPSQGETQIECPLCHTKFSLEDGRVVEYCPKDGPLAWAIGTLKQKEAPVPAKVYSARISKSGRVYVK 223          
BLAST of NO17G02900 vs. NCBI_GenBank
Match: GAQ78230.1 (hypothetical protein KFL_000090750 [Klebsormidium nitens])

HSP 1 Score: 63.5 bits (153), Expect = 9.300e-7
Identity = 47/135 (34.81%), Postives = 65/135 (48.15%), Query Frame = 0
Query:   87 SLRGFTKVLEVGTELAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKG-IITCPLCAVRFSLATGLVTG-AKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVY 220
            SL G+T   EV   L+  EG+ KA    K + Y+++  +    +  IDANC  CKFP+++GK++        D KG  I CPLC  +FSL  G V      DG MQ +  +   K      K Y    +  G VY
Sbjct:   93 SLEGWT---EVAPSLSVEEGTNKAT-IHKGEGYVVI--KSGDELYGIDANCASCKFPVIEGKVT-----TAADGKGPQIECPLCHSKFSLLDGTVLEYCPKDGPMQWIVGTIKEKAPRENTKVYPARMSRSGRVY 216          
BLAST of NO17G02900 vs. NCBI_GenBank
Match: PTQ49617.1 (hypothetical protein MARPO_0002s0098 [Marchantia polymorpha])

HSP 1 Score: 63.5 bits (153), Expect = 9.300e-7
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 0
Query:  105 EGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIITCPLCAVRFSLATGLVTG-AKADGVMQQVSASFFSKQIASGLKTYSTSAATDGGVYVK 222
            EG  KA+  L+D++  +L++R    +  I ANC  C+FP++ GK+     +  E D   I CPLC  +FS+  G V      DG +Q    +  SK      K Y T  +  G +YVK
Sbjct:  160 EGKNKAI--LRDNEGYVLVQR-GSLLYTIKANCTTCQFPMIDGKVE----LVGEGDDLTIECPLCHSKFSVVDGEVAEYCPKDGPLQWFVGTLKSKTEPMAAKVYPTRMSNSGRIYVK 270          
The following BLAST results are available for this feature:
BLAST of NO17G02900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM24115.11.300e-6463.26expressed unknown protein [Nannochloropsis gaditan... [more]
XP_005853669.12.200e-6463.68hypothetical protein NGA_0482400 [Nannochloropsis ... [more]
CBJ48853.19.900e-932.17expressed unknown protein [Ectocarpus siliculosus][more]
XP_024403560.15.500e-732.62uncharacterized protein LOC112295815 [Physcomitrel... [more]
PNR33890.15.500e-732.62hypothetical protein PHYPA_023706 [Physcomitrella ... [more]
GAQ78230.19.300e-734.81hypothetical protein KFL_000090750 [Klebsormidium ... [more]
PTQ49617.19.300e-733.90hypothetical protein MARPO_0002s0098 [Marchantia p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008448NSK008448Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02900.1NO17G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02900.2NO17G02900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642537gene_9355Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100404g1gene6354Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02900.1NO17G02900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02900.2NO17G02900.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02900 ID=NO17G02900|Name=NO17G02900|organism=Nannochloropsis oceanica|type=gene|length=2059bp
CCATTACTCTGTAGATATATTGCTTTCTTATCGCTCCTGGACTAGATACC
AGCCCAATCATTGGTCACAAGACTTTTGTGGTAGACAGCGGGCGCGGAAA
CGGAACGTATGGATATGGGCCATGCAGGGGCTTTGGATCGCCTTCGTCAC
CCTTCCTTCGACGTGGTGGATGCTTCCATCGTTGCTTTGGGGGGGCGTTG
TTCGTTGTGGACGCTCTATTTTCATGTATGCCGTTCTCCACAGGCGGTTC
AGGGTGTTTACATCTGTGTCTGGGCCTGTGCATCTCGTTGCATGGTTGAG
GGGTAGTTGTTTACTGTCCACGCATCGCGCTGTCACCATGATCATTATGC
GTGTCTCCTTGCGTCTGCCCTAAATCAGCTCAACCCACCGCAAATGTACC
ACCAACTAGGCCTACACGAAAGTATGAGCATGCTATCGTACTTCTTTGGC
CTGTGTTTACTCATCCTGGCCAGTACCACCATCCATGCCTTCGTCCCTTC
TTCCCCCGCGCCTTCGGTTCCTTCTTCCTCGCCACCCTCCTCAATCCTCT
TGACCAACACGCAAATGCTTGGACGTCGCAGAGCGCGCATGCCCGTGCAG
gtaattatgcattttctctcaggaacccgatctcccgctctttctgtcct
cacctgtcaccttccttttttcttccctttcttgtagCAGGCCAAAAAGA
AGGGCGGCGCGGCAGGTCCTCAGAGCTTGAGTGGGAACTCGTTGAGAGGG
TTTACAAAGgtacaagaaattgctccattaacttgcaatcataattgata
tcaagcctccccttcagtgcatggattgatctcgcacctttcctcccacc
cttcctcccgcatcagGTCCTTGAAGTGGGCACGGAGCTAGCCGAGGCTG
AAGGGAGCCAGAAGGCCGTGGGGCCTTTGAAGGACGACAAGTATTTGCTG
CTCATAAGAAGGAAGGCAGGCGCGATTAGTGCCATTGACGCTAATTGCGg
tacgtcggagcagggagagaggagggagagaaggaggacagggttatgag
gcataggggggttgtgccgacgatggaggagaaaagcgggcagagacctt
ttcctcgacatcaaaacaaggatgaggatgattttttccatctcaactta
tttttcatccttccttccacattacctctctcccttctccattcctccgt
cagGTCGGTGCAAATTCCCCCTCCTAAAGGGCAAGATCTCTGAGGACCCC
ACCATCGAAGACGAGGACGATAAGGGCATCATCACCTGGTACCTCTCTCC
CTCCCTCCCTCCTCCTTCTCTCTTTTCCTCCCTCGTCTTCTCTTCCCTTG
TCTCCTGGCGTTCTTAGCTTTTGATGCCTCGGACCATTCACCCTATACCC
TCCCTCCCTCCTCCCTTTTCCCCCTCCCCGTAGCCCGCTTTGCGCCGTCA
GATTCTCTCTTGCCACTGGCCTTGTCACTGGAGCAAAAgtaaggatatat
gcctcaaaatgaggacggaggagaagcggaaagggaaaaggagggaagga
agcagagatggaaggatgagacaaagggcgtgcgtttgaaattcaaatca
cgggagataggcgttcacattctctaattcctctctgtctccctccctct
ctgcctccctccctccctccctccctccctaccgtcctccccagGCCGAC
GGGGTGATGCAGCAGGTGTCGGCCTCCTTCTTCAGCAAGCAAATCGCCTC
GGGCCTCAAGACCTACAGCACGAGCGCCGCCACCGACGGCGGAGTGTATG
TCAAGCTGAGGTAGACAGCCTTACCACGTAGGCGGCGTTCTTCGCTTCCC
TTCCTCCCTCTCTACCTTTCGTGGACGGTTTTTCCCTTTTTTTCTGCCCC
AGGGCAGGCCGTGGAGTTTGACCTGGTCAAGGGGTGGCAGTGGGAGAAGA
GTCAGAGACGAGGAACAGCGGAAAGGGAAGGAAGCGGAAGGATAAGCACT
GCCTGCATTCATGTGATTGAGGCCGCAAGAAATGAACAAGCATAAGCATT
TAAATGACA
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protein sequence of NO17G02900.1

>NO17G02900.1-protein ID=NO17G02900.1-protein|Name=NO17G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MYHQLGLHESMSMLSYFFGLCLLILASTTIHAFVPSSPAPSVPSSSPPSS
ILLTNTQMLGRRRARMPVQQAKKKGGAAGPQSLSGNSLRGFTKVLEVGTE
LAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKIS
EDPTIEDEDDKGIITCPLCAVRFSLATGLVTGAKADGVMQQVSASFFSKQ
IASGLKTYSTSAATDGGVYVKLR*
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protein sequence of NO17G02900.2

>NO17G02900.2-protein ID=NO17G02900.2-protein|Name=NO17G02900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MYHQLGLHESMSMLSYFFGLCLLILASTTIHAFVPSSPAPSVPSSSPPSS
ILLTNTQMLGRRRARMPVQQAKKKGGAAGPQSLSGNSLRGFTKVLEVGTE
LAEAEGSQKAVGPLKDDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKIS
EDPTIEDEDDKGIITWYLSPSLPPPSLFSSLVFSSLVSWRS*
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Synonyms
Publications