NO17G02880, NO17G02880 (gene) Nannochloropsis oceanica

Overview
NameNO17G02880
Unique NameNO17G02880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr17:841544..842895 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:841544..842895 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G02880 vs. NCBI_GenBank
Match: EWM24118.1 (hypothetical protein Naga_100404g3 [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 4.700e-48
Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 0 
Query:    2 SLSLVAFKRALRPAAATCARRAGPSRCLAGAPQGHESE-HQEQAYINPKWFAGLEEGVPVEHPLKMGLLFPPKLTAKNAPTAEEYESGKVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEDNH 127
            S+SLVA KR +RPAA  C RRA P+R  A      ESE HQE AY+NPKWF GLEEG+PVEHPLKMGLLFPPK T KNAPTAEEY SG VKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE++H
Sbjct:   43 SMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168
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BLAST of NO17G02880 vs. NCBI_GenBank
Match: XP_005853666.1 (hypothetical protein NGA_0482100 [Nannochloropsis gaditana CCMP526] >EKU22690.1 hypothetical protein NGA_0482100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 198.4 bits (503), Expect = 1.400e-47
Identity = 97/125 (77.60%), Postives = 104/125 (83.20%), Query Frame = 0 
Query:    3 LSLVAFKRALRPAAATCARRAGPSRCLAGAPQGHESE-HQEQAYINPKWFAGLEEGVPVEHPLKMGLLFPPKLTAKNAPTAEEYESGKVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEDNH 127
            +SLVA KR +RPAA  C RRA P+R  A      ESE HQE AY+NPKWF GLEEG+PVEHPLKMGLLFPPK T KNAPTAEEY SG VKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE++H
Sbjct:    1 MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 125
The following BLAST results are available for this feature:
BLAST of NO17G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24118.14.700e-4877.78hypothetical protein Naga_100404g3 [Nannochloropsi... [more]
XP_005853666.11.400e-4777.60hypothetical protein NGA_0482100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008446NSK008446Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02880.1NO17G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674074gene_9354Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100404g3gene6352Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02880.1NO17G02880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02880 ID=NO17G02880|Name=NO17G02880|organism=Nannochloropsis oceanica|type=gene|length=1352bp
CAGCACACACGATGAGCTTGTCCCTGGTCGCCTTCAAGCGCGCCTTGCGC
CCGGCGGCTGCTACGTGCGgtcagtattgcgagggagaaagggaggcagg
gagagaggaagggaggcgagggaaggagggaggggatgagggagggtaaa
tgcatttctcatacccggtgggttatctatccaccacgccctcacggcgg
tggccagccgctacgtgctatcgagttaccaaacctcatggcatcgtggg
cgtggaaatcactcactcatcctacatctctctccttcccttgcttccac
cgtcctctgtgcagCCCGCCGCGCCGGCCCTAGTCGATGCCTCGCCGGCG
CACCCCAGGGCCACGAGTCGGAGCACCAGGAGCAGGCCTACATCAACCCC
AAGTGGTTCGCGGGCTTGGAGGAAGGCGTGCCTGTCGAGCACCCCTTGAA
Ggttggagaaagggagggagagagggaggcagagaagtaatggaagataa
tgcggtggagaaaggctgtccaaggagggaagaatatagttgggatgtaa
tttcatggctgtcgtgtgagagcaccatcacaccatgctgaagcaaacac
tcacaatttcccctccatccttgcgtctctcctctttcctcgaaatagAT
GGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAGAACGCCCCTACGGCCG
AGGAGTACGAGAGTGGAAAGgtaggttgccgcacagaaggggaatcacag
gctggagagaggcagagaacgatggaagccacttggaagtgatcgattcg
gacttcctttgtctcagtcctgctattatgagtctttctctgtgcctatt
acatcacatctgatcactcacttctcccctccctcccaccctccctccct
ccctcacatctagGTTAAGGTGCCCATCGTCGTAGATTCTCTGGAATGGA
CTCTGTCTTCCCCCCCTCCCTTGCACCAGTTTGACGAGCCCCCTATTATC
GTAGAGTTCCCTGAGGACAACCACTAAGCGTTCGACTAAGCCGGCGATAC
GAAGCATTATGGATTAACAGCGTCATCAAAGCCACCAGACCCAGAAGAGT
TACGGCCTCCTCTCCACCCTCCCGCCGTCCTGCGGTTCGAGTGCGGGTGC
GATAAATGGCGGTGGGAGGGTGGATCCGGGTATGTGTCATTATTTTTGGG
AGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGCAATGAGAGAGCGAATACT
GAAATTGAGGAACTTACAGGCGGGGGAAGGGAGGGGCGATGAGTGCGAGG
AGGGGTAAGAAGGGACGTGGAAAGAACAGACATTTAGCTCGTGTGCTGCG
GG
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protein sequence of NO17G02880.1

>NO17G02880.1-protein ID=NO17G02880.1-protein|Name=NO17G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MSLSLVAFKRALRPAAATCARRAGPSRCLAGAPQGHESEHQEQAYINPKW
FAGLEEGVPVEHPLKMGLLFPPKLTAKNAPTAEEYESGKVKVPIVVDSLE
WTLSSPPPLHQFDEPPIIVEFPEDNH*
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Synonyms
Publications