NO17G02830, NO17G02830 (gene) Nannochloropsis oceanica

Overview
NameNO17G02830
Unique NameNO17G02830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3165
Alignment locationchr17:829762..832926 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:829762..832926 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf
IPR023753Pyr_nucl-diS_OxRdtase_FAD/NAD
Homology
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BLAST of NO17G02830 vs. NCBI_GenBank
Match: XP_005853667.1 (hypothetical protein NGA_0482200 [Nannochloropsis gaditana CCMP526] >EKU22691.1 hypothetical protein NGA_0482200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 120.2 bits (300), Expect = 2.600e-23
Identity = 62/118 (52.54%), Postives = 74/118 (62.71%), Query Frame = 0 
Query:   23 GASFAGLAAARTLLHARHNKDKQPLRVTLIEPKDYFEYTPGILRAFVAPEHAEGLCVPLEETL----GPAPTADGKHGGPRAEWVQGWLTRVEPGKVIVACQGNDADNNYGDGKKVTG 137
            GASFAGLAA RTL+ A     ++P RVT++EPK YFEYTPGILRA VAPEHA+ LCVPL+E L    G  PT D      +  WV+GWL ++E   + V C G   D    DG  V G
Sbjct:   28 GASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPP-TDGHAVDG 144
[Close]
BLAST of NO17G02830 vs. NCBI_GenBank
Match: EWM24119.1 (hypothetical protein Naga_100404g5 [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 2.600e-23
Identity = 62/118 (52.54%), Postives = 74/118 (62.71%), Query Frame = 0 
Query:   23 GASFAGLAAARTLLHARHNKDKQPLRVTLIEPKDYFEYTPGILRAFVAPEHAEGLCVPLEETL----GPAPTADGKHGGPRAEWVQGWLTRVEPGKVIVACQGNDADNNYGDGKKVTG 137
            GASFAGLAA RTL+ A     ++P RVT++EPK YFEYTPGILRA VAPEHA+ LCVPL+E L    G  PT D      +  WV+GWL ++E   + V C G   D    DG  V G
Sbjct:   28 GASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPP-TDGHAVDG 144
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BLAST of NO17G02830 vs. NCBI_GenBank
Match: EWM24120.1 (hypothetical protein Naga_102483g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13
Identity = 76/136 (55.88%), Postives = 89/136 (65.44%), Query Frame = 0 
Query:  473 PSYLPSPGIEANAGWLVTDSRLRVASF-SSAASSPLPSPPPSLVLAAGDVICTPAGDEKTAFAAELQAET----AARQILAALXXXXXXXXXXXXXXXXXXXXXPSALVGAPVAPLLYCISLGPHEGILVFNEWVL 604
            PS L + GIEA++GWL+TDSRLRV+S                  LAAGDV   P GD+KTAFAAELQAE              XXXXXXXXXXXXXXXXXX   P+AL G  +AP +YC+SLGP+EGILVFN+ V+
Sbjct:   27 PSSLFATGIEASSGWLLTDSRLRVSSLPXXXXXXXXXXXXXXXXLAAGDVTDRPGGDDKTAFAAELQAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTYPTALTGDTMAPFIYCLSLGPYEGILVFNDLVV 162
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BLAST of NO17G02830 vs. NCBI_GenBank
Match: OEU08325.1 (FAD/NAD(P)-binding domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 72.4 bits (176), Expect = 6.100e-9
Identity = 57/140 (40.71%), Postives = 80/140 (57.14%), Query Frame = 0 
Query:  517 AAGDVICTPAGDEKTAFAAELQAETAARQILAAL--XXXXXXXXXXXXXXXXXXXXXPSALVGAPVAPLLYCISLGPHEGILVFNEWVLAGPVLGRVAALVKALIEWSKIWEARGSRLSSFFWHVVAHPITFLLHRWVVP 655
            A GDV   P  DEK AF AE+Q + AA+ ++  L        XXXXXXXXXXXXX  P  + G+   PL++ +SLG ++G+L FN+  + GP     AA+VK ++E++K+   RG  L    W  +   +T  L R V P
Sbjct:  460 ACGDVASPPTNDEKQAFQAEMQGKVAAKNVIKLLESESVGTNXXXXXXXXXXXXXRYPQDIAGSDRIPLVFVLSLGRYDGVLGFNDMCIPGP----FAAVVKYILEYTKVSHMRGRMLGKLIWK-IGDAVTLFLSRTVFP 594
[Close]
BLAST of NO17G02830 vs. NCBI_GenBank
Match: XP_003059256.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH56388.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 65.9 bits (159), Expect = 5.700e-7
Identity = 73/303 (24.09%), Postives = 116/303 (38.28%), Query Frame = 0 
Query:  351 IVLVSKTARLLPGFPAACGKAALQWLKAHSVQVVLGDEVIDLPPSSSSSPPTSLGASSVARSIKTKSGRVLKPSSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVYRCTGPTPSGPSYLPSPGIEAN-AGWLVTDSRLRVASFSSAASSPLPSPPPSLVLAAGDVICTPAGDEKTAFAAELQAETAARQILAALXXXXXXXXXXXXXXXXXXXXXPSALVGAPVAPLLYCISLGPHEGILVFNEWVLAGPVLGRVAALVKALIEWSKIWEARGSRLSSFFWHVVAHPITFLLHRWV 653
            + LV+   RLL   P   GK AL+WLK++ V+V+L D V D     +    + L     A  +KT  G+ ++                                      +VY C G  P+      S G      G +  DS +R+   ++             V AAGD   T  G+E+TAF A+L A  AA  +                         P+ + G    P++  +SL     ++ FN  V+     G+  A+VK  +E  +I  ARG+  ++F W  +   +T  L R++
Sbjct:  173 VTLVTPADRLLERMPEQAGKLALKWLKSNGVRVILKDRVSDW--GGAPVDDSVLAPGGGAYVVKTAGGKTIEAD------------------------------------VVYPCVGGAPAAAPAKKSIGSAMGIKGDVHVDSAMRITGMTN-------------VFAAGDCADTHVGEERTAFTADLNAIAAAANV-------------KNLRRGRSLQAYPNVVTGWSRVPVIAVVSLYKWYAVMQFNRVVIG----GKFPAVVKWFLETMQIAVARGTWGAAFVWDAI-EKVTVALGRFL 406
The following BLAST results are available for this feature:
BLAST of NO17G02830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853667.12.600e-2352.54hypothetical protein NGA_0482200 [Nannochloropsis ... [more]
EWM24119.12.600e-2352.54hypothetical protein Naga_100404g5 [Nannochloropsi... [more]
EWM24120.14.100e-1355.88hypothetical protein Naga_102483g1, partial [Nanno... [more]
OEU08325.16.100e-940.71FAD/NAD(P)-binding domain-containing protein [Frag... [more]
XP_003059256.15.700e-724.09predicted protein [Micromonas pusilla CCMP1545] >E... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008443NSK008443Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02830.1NO17G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_102483g1gene6349Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02830.1NO17G02830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02830 ID=NO17G02830|Name=NO17G02830|organism=Nannochloropsis oceanica|type=gene|length=3165bp
AAAAGTAGTAGGAACGCGAAAGTCAAGCGGAACCATCGCCATGGGTGGAG
TCGTCTCCACTTCTTCATCGTCGGCATCCGACCCACCTGCCTCTGTCATC
ATTGTCGGAGCCTCGTTTGCCGGCCTTGCCGCTGCCCGTACCCTGCTTCA
TGCACGCCATAACAAGGACAAACAACCCCTGCGTGTGACCCTGATAGAGC
CCAAGGACTATTTTGAGTACACCCCGGGCATCCTGCGTGCGTTTGTGGCG
CCTGAGCACGCCGAAGGATTGTGCGTGCCTTTGGAAGAgtgagtacaaag
ggtaggggcgggagggaggatggaatggagaaagatgtcgcttacagcaa
agaggagtaaactagtggagaagacataaaaaagcacgagcgagtggtga
agaatgggtcgccagcagccaatggcgtgctctgtctcccggaggacgcg
tcagcatctaccacactccttccccacacacaaccgaccacctacctgcc
attccacacactccctccaccccgaaccagaggccttctctccaataagc
atcctttcctattcacgtctcatcccttcgtgtccgcctcccttgacaca
cagGACGCTCGGGCCCGCTCCCACTGCAGATGGCAAGCACGGCGGCCCTC
GGGCAGAGTGGGTGCAAGGTTGGCTCACCCGCGTAGAGCCTGGGAAGGTC
ATCGTGGCCTGTCAAGGAAACGATGCAGACAACAACTACGGTGACGGGAA
GAAGGTGACAGGGGACGGCAACGGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCGCC
GACACGAGAACCAGAGCAAGGACCATTGAGCTCAAGTACGATTTCTTGCT
CCTCTGCACTGGCTCGGGCTACCCCCATCCCATCAAAGCCCCTTCATCTC
TCCCTTTTTCCCTCCCCCCCTCCCTTCCTCCCCTTCGCCCTCTCTCCCTC
CCTCTCTCTCTTCCGGCGTCTCAAAAGATGGAGAAGCAGCAGGAGGAGGA
GGAGCAGCAGAAGCAATCTCGCTCTGTTGGGAAGGAGCTCCAGCAGAGCA
GGCATAGAACATTCCAGCAGCGCTACGACCAGGCCAAAAAGCAGCAGCAG
GAGGAAGGAGATGGATTATCACGAAGAGGGCGATTGCGGGCGCTGAAGAA
GGCGGCAAGAGCAGCAACAGCAGCGAGCAACGTCCTGATTGTGGGAGGAG
GAACAGTAGGGGTCGAGCTGGCGGCAGAGTTGGCGGCGGCAGCTGCTGCT
GCTGCCGCCAGGCGGACAAGAGTGAAGGAGGGGAGACTCTGGTTTCTGCG
GAGGTGGATGGGGAGGAAGGAAGGAAGGAGGGAGGGAGGGAGGAAGGGGC
CGATGATTGTGTTGGTGTCAAAGACTGCGCGGTTGTTGCCAGGGTTTCCA
GCTGCGTGCGGGAAGGCGGCTCTACAGTGGTTGAAGgtggggaaaagacg
gaggaaggaagggagggaggaagggaaaggaagtggattggcagaaataa
aacaagagccaacggatttcgtgcgtctcgccttttcaccttcccttcct
cccaccttccctttctctcttcctcccttcctcccttcctcccttcctcc
ctccttcctcccctccctccctccctcccgccctccctttgcagGCGCAT
AGCGTGCAGGTAGTCCTGGGGGACGAGGTAATAGACCTTCCTCCCTCCTC
CTCTTCCTCCCCTCCTACCTCCCTCGGTGCCTCCAGCGTCGCTCGTAGCA
TTAAGACCAAATCGGGCCGTGTGCTCAAGCCTTCCTCCTCCTTTTCCTCC
ATCGATATTTTGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTTCTCGTCT
ATCGCTGCACAGGGCCCACGCCCAGCGGCCCATCTTATCTCCCCTCGCCA
Ggtgcgtgtcttccttccctccctccctccctccctccctccctccctcc
ctccttccctccttccctccttccctctctcctccctctttcccttcccc
tcccttcctccctcccttaaccaggtgcgcgccttgcctcccctcttttc
ctctccctttcatcacctccctccctccctccctccctccctcgcctcct
ctccggcagGCATCGAGGCCAACGCCGGCTGGCTCGTGACCGACAGCCGC
CTCCGTGTCGCCTCCTTCTCCTCCGCCGCGTCCTCCCCCCTGCCTTCCCC
CCCTCCTTCCCTCGTCCTGGCCGCGGGTGATGTCATTTGCACCCCTGCCG
GAGACGAGAAGACGGCCTTTGCTGCAGAACTACAGGCGGAAACAGCGGCA
AGACAGgtaaggagggcaaaaccgaagggagggaggggacagaaggaggg
agggagggagagaagaagggagggagggcggtatgtatcggtaaaagtca
atgtctctcctccccaaacccgcccttcctccattcctccctccctccat
acctcccttctcagATCCTTGCCGCTCTCTCTACCACCACCTCCTCCACC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTGGTCATGGTCCTACCCCTCTGC
CCTGGTGGGAGCACCGGTGGCCCCCCTCCTCTACTGCATCAGCCTGGGAC
CTCACGAAGGCATTTTGGTCTTCAACGAATGGGTGgtgagggagggaggg
agggagggagggagggagggagggaggggagatgtccttgtggttgattt
tcgtaatttttgtggaatcgctcttctcgacttcgttctcattggccctc
cctccctccctccctccctccctcccttcctccctccctccctcccccca
ccctccctccctccccagCTGGCGGGGCCTGTATTGGGAAGGGTGGCGGC
GCTGGTCAAGGCGTTGATCGAATGGAGCAAAATATGGGAGGCACGAGGGA
GCCGCCTCTCCTCCTTCTTCTGGCACGTCGTGGCCCATCCCATCACGTTC
CTCTTGCACCGATGGGTAGTGCCGGATGGACGGAGGAGGGGGGGAGGGAG
GGGGAGGAGCAAGGAGGGGGCAGGTGGCGGGTCGTTCCGGGGAGGGGAAA
AAAAAGAGGCGTGAG
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protein sequence of NO17G02830.1

>NO17G02830.1-protein ID=NO17G02830.1-protein|Name=NO17G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MGGVVSTSSSSASDPPASVIIVGASFAGLAAARTLLHARHNKDKQPLRVT
LIEPKDYFEYTPGILRAFVAPEHAEGLCVPLEETLGPAPTADGKHGGPRA
EWVQGWLTRVEPGKVIVACQGNDADNNYGDGKKVTGDGNGNSSSSSSSSS
SSSSSSSSSSSKSSADTRTRARTIELKYDFLLLCTGSGYPHPIKAPSSLP
FSLPPSLPPLRPLSLPLSLPASQKMEKQQEEEEQQKQSRSVGKELQQSRH
RTFQQRYDQAKKQQQEEGDGLSRRGRLRALKKAARAATAASNVLIVGGGT
VGVELAAELAAAAAAAAARRTRVKEGRLWFLRRWMGRKEGRREGGRKGPM
IVLVSKTARLLPGFPAACGKAALQWLKAHSVQVVLGDEVIDLPPSSSSSP
PTSLGASSVARSIKTKSGRVLKPSSSFSSIDILSSSSSSSSSSSSPSSSS
SSSSSSSSSFLVYRCTGPTPSGPSYLPSPGIEANAGWLVTDSRLRVASFS
SAASSPLPSPPPSLVLAAGDVICTPAGDEKTAFAAELQAETAARQILAAL
STTTSSTSSSSSSSSSWSWSYPSALVGAPVAPLLYCISLGPHEGILVFNE
WVLAGPVLGRVAALVKALIEWSKIWEARGSRLSSFFWHVVAHPITFLLHR
WVVPDGRRRGGGRGRSKEGAGGGSFRGGEKKEA*
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Synonyms
Publications