NO17G02800, NO17G02800 (gene) Nannochloropsis oceanica

Overview
NameNO17G02800
Unique NameNO17G02800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4525
Alignment locationchr17:813783..818307 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:813783..818307 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO:0034220ion transmembrane transport
GO:0023014signal transduction by protein phosphorylation
GO:0016310phosphorylation
GO:0007165signal transduction
GO:0006811ion transport
GO:0000160phosphorelay signal transduction system
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0005216ion channel activity
GO:0000155phosphorelay sensor kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR000014PAS
IPR001425Arc/bac/fun_rhodopsins
Homology
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BLAST of NO17G02800 vs. NCBI_GenBank
Match: PRP82869.1 (putative two-component hybrid sensor and regulator [Planoprotostelium fungivorum])

HSP 1 Score: 75.9 bits (185), Expect = 3.600e-10
Identity = 59/187 (31.55%), Postives = 88/187 (47.06%), Query Frame = 0 
Query:   47 IAYTACCIHAIAGTSYFLMSNNYVPLVPTSKGRPLFIARLFEWMVTVPMLLSLIAWLVDPDSRRVNQLRGLQFFCLVTGGIGPILRFPFN--WISYCYSCYLQVLVLSTLHRLFQGMKRKLPSSYDRRLIGLLHYTILTIFSVYAIFWLFAAELDLVSIATEANVYATLDISTKVILTS--VLSNLT 230
            I    C +H +AG +YF + NN  P+  TS GRPL+     EW  T P LL ++A L D D +++ +        +V G +     FP+N  W    + C     VLS L    + ++  +         G      L I+S++   WL A  L+ VS  TEA V + LD+  KV+ +S  + SN T
Sbjct:  295 IGTVVCFVHWVAGCTYFCLINNIFPIWATSTGRPLYPIIYLEWFFTTPSLLFILAKLADIDKKKMIRAVMADQVMIVAGFLASYTCFPWNIYWGLVSFLCLFP--VLSALKNYTEDIECLILKDKKTFTFGTFGTLSLIIWSLFPAVWL-AGTLEYVSSDTEAIVLSFLDVIAKVVYSSSVLASNYT 478
The following BLAST results are available for this feature:
BLAST of NO17G02800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
PRP82869.13.600e-1031.55putative two-component hybrid sensor and regulator... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02800.1NO17G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606484gene_9348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02800.1NO17G02800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02800 ID=NO17G02800|Name=NO17G02800|organism=Nannochloropsis oceanica|type=gene|length=4525bp
CCTCACCCCCTTAAGTGATTTTTTCTTCTCACCCCATCCATCATTTTAAA
AGCCTCTTCCCACCTGCACGATAGCAAGGAGGTGATCAGACTGAGCATCT
TTGAGCCTTGATGTCAGCATTTTACGTGTGCTTCCTCCAAAGGCGCTGCT
CGCCTGTCGTGTTTTCCATGTTGTTCTGTCGCGAACACGGCTGTATTGAA
GTTACCGCCCCGCCAGTGTGTACACTATCAAGGTGCATCGAGATGCACAT
CTCGTCCGCATTGACATTCTGAAGATCCCTCCTTCGTATCAGCAGACTTG
TTCTTGATTTACACCGTCGCGTTGCCCCCTTTCCAATCAACACCGGCCTG
AGACGGGGCAGCAGCCCGAAGCAACATTCACCTCTCTTGCAGACACATGG
ACCATTTGGGCATCTAACATTTCTCTTTAGGCGCAGCCACGGCGGGACAT
CGACCATGAGTTGCAGACGGTGCCTGGAGATGCGCGGACGAGCCATTGCG
GCCGGTGTCTTCCTCAATCCCGGCCTCGACAACTCATACAAAAACACTAT
ATACTGTTCTTGTTGCATGCCACTGCAATATTCGCACACTCTTAGCGCAG
CGGAACACGCTTGCTATAGTACTCCTCCTCGCCCGGCATGCCTATGAAAC
AACAGCAACCCTTCTGTACCCTGACCCTCCCTCTCCCCCCCTCCGTCCCT
TATCCCTCCTTACAGAGCCCTGTCAAGTCCCTTCGCCAGCACGATGAACA
GCCTTGCGGACTCGTTGGTGTGGGAGCACCCGCAACAAGACCGCCTCCGC
TTGAACTCCATCATTTTTTTTATCGCCTTTCTCTGGTCGGCGGGCACTGG
GCTGTCGTCAAAATTAAAGgtaaggagtgaggagggaggaggagaggaag
aagcaaggagggagggcacgcggatggagatttcgtctctctaacttatc
gcattactcttttaccccgctggcgataaactggctgtctgtcctttagg
cctccatgcccatgacggacgcaagcaccgaggcccctggactcaccctc
cctcccccctcccctccttccttccctccctccctcattgtcagGGCCGT
GCCCGAATTGCCTACACCGCATGCTGCATCCACGCTATAGCTGGGACGTC
TTACTTTCTCATGgtgaggcagggaaggagggagagggagggaggaaggg
aggagagaggcagggagggaggaaggaggggaggagggagggagggagag
aggcagtgagggaaggaggcaaggcgaaacaatgaagcgaatatatccca
gtgaagcaactcatgccccagtgaagcaactcatgccccagtgaagcaac
tcatatcccagtgaagcaactcatatcccagtgaagcaactcatatccca
gtgaagcaactcatatcccagtgaagcaactcatatcccagtgaagcaac
tcatatcccagtgaagcaactcatatcccagtgaagcaactcatatccca
gtgaagcaactcatatcccagtgaagcaactcatatcccagtgaagcaac
tcatatcccagtgaagcaactcatatcccagtgaagcaacccataagcaa
ctcatatcccagtgaagcaagagaccactttctaccaatgggggaaagcc
tgttctcacacacctccctccctccctccctccctccctccctccctcca
gAGCAACAACTACGTCCCCCTCGTGCCCACCTCCAAGGGCCGTCCGCTCT
TCATCGCCCGCCTCTTCGAGTGGATGGTCACCGTACCCATGCTCCTCTCC
CTTATAGgtacctccctccctccctccctccctccctccctcctccttgc
tcacctcgccttacacccctccctccctccctccctccctccctccctcc
ctccctccctccctcccagCCTGGCTCGTCGACCCTGACAGCCGCCGCGT
CAATCAATTGCGAGGGCTCCAATTTTTCTGCCTCGTTACCGGCGGCATAG
GCCCGATTCTCAGgtaccccccctccctccctccctccctcccgccctcc
ctcccgccctccttccctcccttctcccccccctatcctttcggtcatct
tacgttcttcctttcttccttccttcccgccctctcactccctagATTTC
CCTTCAACTGGATCTCCTACTGCTACTCCTGCTACCTTCAGgtaagccca
tacccactcctccctccctccctccctccctccctccctccctccctccc
tccctctcatccctccctccctctctccctccctctttccctctctccct
ccctccctccagGTCCTAGTGCTCAGCACCCTCCATAGACTTTTCCAGGG
AATGAAACGCAAGCTTCCATCTTCCTACGATCGCAGGgtgcgtccctccc
tccctccctccctccctccttctcttcctcccttcctccgccgctccgcc
caccggccttgttttctgcatcttcctttttctatttccccccggcacca
ttgctgtcactcaaccctccctccctccctccctccctccctccctccct
cagCTCATCGGCCTCCTCCACTACACAATCCTGACCATATTTTCCGTCTA
TGCTATTTTCTGGCTCTTTGCCGCCGAGCTGGACCTGGTGTCCATCGCTA
CTGAGGCgtaagtacgactctccctccctccctccttccctccctccctc
cctccctccccccccccttcggtttctcgatcgaggcatgtggagggatt
ggacgctatttcaatattcttccgccccccaacctcctttccctccctcc
ctccctccccacctcgccatcgtcctcgtatgtcccatgccactcctccc
tccctccctccctccctccctccctccctccctcagCAACGTATACGCCA
CTCTGGATATCTCAACCAAAGTCATCCTCACCTCCGTCCTCTCCAACCTC
ACCGGCGCCGCCTACGACTACGATTTCGgtaccgccctccctccctccct
ccctccctccctccctccctccgctccgccggtccgttcccatccttttc
ttccgctttctcctcccaccacaccgctcaaccccctccctccctccctc
cctccctccctccctccctccctccctccctcgcaccatatagAGGCCTT
CCCCCAATATTTTCGGAGCCTTTTTTCCTCCATTCAAGTGCCCGCCTTCG
GCCTTAACAAGGAGGGGTCAGTGGTGGTGTGGAACAGCGACATGGAAGCT
CTCACCGGCTGCTCCGCTGGCTCCGTGCTCTTCCTCAAGgttcgcccttc
ctccctccctccctccctccttgttgtctgtgccatccatgaacttctca
ctcctttctttcttccttccctccctccctccctccctccctccctccct
ccctccctccagTTCAATCGATGCCCGGCCTTCACAAAGGCAGGTCATGC
CGCCATCAGCACGGCCCTCTCCTTCCCCCTCCTCCCGCTTCCCTCATCCC
AGAACATACAAACGAATGTCAAGCCCGAGATCACCATAGACCTCGTCCGG
CAGAGCAATTCCCCGgtacgtcctccctccctccctccctccctccctcc
ctccctccctccattccttcgtcattttctccgcctttcccccacttgga
atcgtcttacctctggcttgactccctccctccctccctccctccctccc
tccctccctccctccctccctctccccatcagGAGACCAAGGCCTTATTT
TACGTCCTGCGCAATGGAGGGGGGCAGCCTGCATTGCCTGAAACCTTCTT
CATCGACGCGAGATCCAACCCTCGGGGGGCGGAGCAGgtagggagggagg
gacggaggggggtagcaggcgcatcgccttagtcgtagacatgcccgtgt
cacctcaacacctctatatctatatctctacatctgaatccatcttttcg
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccagGCCTACCTCGAGCTGTCTCGCTGCCTGGCAGGGGCCAAG
GGGGGGAGGGAGGGAGGGAGGGGGGGGCAAATCGGGAGCACCTCGTCCCT
CACCTCAAAAGACAAAATGGGGTTTGTGTCCGACAGCAGCAGTAGGAACA
GCAGCAGCAGCGGCCAGACAGGGGGAGGGAGCGTAGGAGGCGGGTTGGCC
TCACGTTTGTCGTAGGGGCGGAGGGAGGATCGGAGGGAGGGAGGGGGTGG
GGACGATATGTCCATGGCAGGAGCACTTCGAGGGTGTCATTAATTACTCT
GTGGAAAGTAGATAGGGAAACATTTTAATAACTGCAGAAGTGTGACAGCC
GTGCACCAGCACGCGCGTCAGCAGCAGCAGCAACAGCACAGTAGAGGAAG
CGCCCCTTGTACGCACACTTGACATATTTAAAAAAGGTGGGGGAAAGAAG
ACGCTGAGAGGAAGACCTAGAATGTCATGAATCTATCAATCTATGCAATC
TATATATATCTACGTTATCTATATA
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protein sequence of NO17G02800.1

>NO17G02800.1-protein ID=NO17G02800.1-protein|Name=NO17G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MNSLADSLVWEHPQQDRLRLNSIIFFIAFLWSAGTGLSSKLKGRARIAYT
ACCIHAIAGTSYFLMSNNYVPLVPTSKGRPLFIARLFEWMVTVPMLLSLI
AWLVDPDSRRVNQLRGLQFFCLVTGGIGPILRFPFNWISYCYSCYLQVLV
LSTLHRLFQGMKRKLPSSYDRRLIGLLHYTILTIFSVYAIFWLFAAELDL
VSIATEANVYATLDISTKVILTSVLSNLTGAAYDYDFEAFPQYFRSLFSS
IQVPAFGLNKEGSVVVWNSDMEALTGCSAGSVLFLKFNRCPAFTKAGHAA
ISTALSFPLLPLPSSQNIQTNVKPEITIDLVRQSNSPETKALFYVLRNGG
GQPALPETFFIDARSNPRGAEQAYLELSRCLAGAKGGREGGRGGQIGSTS
SLTSKDKMGFVSDSSSRNSSSSGQTGGGSVGGGLASRLS*
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Synonyms
Publications