NO17G02680, NO17G02680 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G02680 vs. NCBI_GenBank
Match: EWM24149.1 (hypothetical protein Naga_100426g1 [Nannochloropsis gaditana]) HSP 1 Score: 216.9 bits (551), Expect = 1.500e-52 Identity = 108/160 (67.50%), Postives = 129/160 (80.62%), Query Frame = 0 Query: 10 EQIAVPLVCFAAICLVHARYLKTWLSPTIWADPHALVELNTVHNLRTFFVGIRTRWVLENHGRTSVAVQTMRDMISITTASATASMAFISIFIGLSKFNLSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTK 170 EQI VP++ F I LVHARY K WL+PT WADPHA V+L +VHNLRT FVGIRTRWVLENHGR ++ VQT+RDMI +SATA+MAFISIFIGLSK NL + +L+ C P EDG C+ F+ +R RFGLCIGNFVVIFFNMLLA R+A+N++FM+NTK Sbjct: 8 EQIFVPVISFLTIFLVHARYFKLWLTPTAWADPHARVDLQSVHNLRTLFVGIRTRWVLENHGRKNMVVQTLRDMIRTCMSSATAAMAFISIFIGLSKSNLLTLNLLGCRP-EDGPECNSFDAHLRMIRFGLCIGNFVVIFFNMLLAARFALNTSFMINTK 166
BLAST of NO17G02680 vs. NCBI_GenBank
Match: CBN74804.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.4 bits (233), Expect = 1.100e-15 Identity = 70/239 (29.29%), Postives = 114/239 (47.70%), Query Frame = 0 Query: 9 VEQIAVPLVCFAAICLVHARYLKTWLSPTIWADPHALVELNTVHNLRTFFVGIRTRWVLENHGRTSVAVQTMRDMISITTASATASMAFISIFIGLSKFNLSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTKEVDGKPLSQMLTVNVLARASWHYTLGVRGFFLAAPLVSWLFGSWMLLGTTVLYVLGVALMEEDFLLTEESPPRPRRTD 248 + Q+ +P VCF A+C + W +W PH + R F +R WV++N+ + AV T RD I A++ F + I L+ F + + I S+ T CS + + + G+ + IFF TRYA++ +F +NT+++ G P+ Q L V V A +Y+LG+R +F P+ +W+F SW LL T +Y V +E + +E RR + Sbjct: 11 ITQVVIPAVCF-AVCAA----FQGW---ELWG-PHK----PELARARALFRDVRAGWVVDNYMKGQAAVNTTRDYI-------RAALFFANTAILLATFVVGYAGSIYTDCSDGDTSCSA-DDWLFVIKLGVLAALLMTIFFVFTQCTRYAVHFSFCINTRKIAGAPMPQSLMVKVFNHAHQYYSLGIRLYFGTIPVFAWIFTSWALLAVTPVYAYMVRGLENAGFVQDELDEIARRAE 228
BLAST of NO17G02680 vs. NCBI_GenBank
Match: EWM22556.1 (Protein of unknown function DUF599 [Nannochloropsis gaditana]) HSP 1 Score: 93.6 bits (231), Expect = 1.900e-15 Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 0 Query: 57 FFVGIRTRWVLENHGRTSVA-VQTMRDM--ISITTASATASMAFISIFIGLSKFN-LSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTKEVDGKPLSQMLTVNVLARASWHYTLGVRGFFLAAPLVSWLFGSWMLLGTTVLYVLGVALMEE 232 FF IR WVLEN +A + T+RD +S+ A+ A I + FN + SL C P + A+ + I NF + +ML+ATR+ +N FMLN KEV G+PL +VL+RA+ +Y +G+R + + PL SWL G W L+G TVLY LG A E Sbjct: 138 FFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGP----------DNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLY-LGFAYYVE 305
BLAST of NO17G02680 vs. NCBI_GenBank
Match: CBN74799.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.6 bits (205), Expect = 2.000e-12 Identity = 61/230 (26.52%), Postives = 107/230 (46.52%), Query Frame = 0 Query: 9 VEQIAVPLVCFAAICLVHARYLKTWLSPTIWADPHALVELNTVHNLRTFFVGIRTRWVLENHGRTSVAVQTMRDMISITTASATASMAFISIFIGLSKFNLSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTKEVDGKPLSQMLTVNVLARASWHYTLGVRGFFLAAPLVSWLFGSWMLLGTTVLYVLGVALMEEDFLLTEE 239 ++++ +P +CF A+C +TW DP RT F +R WV + + + A T RD I A ++ + +G + S C S+D C+ E + + G +V FF + TR+A++ +F +NT+E++G P+S + VNV + +++LG+R +F P+ +W+F W LL T +YV V +E + +E Sbjct: 10 LQEVVIPAICF-AVC----AGFQTWEFLGSHDDP---------ARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVG-----YAGSIYTDC--SDDDDDCTP-EDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDE 217
BLAST of NO17G02680 vs. NCBI_GenBank
Match: WP_013032666.1 (DUF599 domain-containing protein [Nitrosococcus halophilus] >ADE14779.1 protein of unknown function DUF599 [Nitrosococcus halophilus Nc 4]) HSP 1 Score: 74.7 bits (182), Expect = 9.400e-10 Identity = 58/167 (34.73%), Postives = 84/167 (50.30%), Query Frame = 0 Query: 61 IRTRWV--LENHGRTSVAVQTMRDMISITTASATASMAFISIFIGLSKFNLSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTKEVDGKPLSQMLTVNVLARASWHYTLGVRGFFLAAPLVSWLFGS-WMLLGTTVLYVL 225 IR WV + GR +AVQT+R+ T +AT +A +I +GL N+ ++ P S+ + + + + GNF FFN LA RY + FM+N E +S +L R + HYTLG+RG++LA PL WLFGS W G +L V+ Sbjct: 42 IRRLWVEKVMQEGRDILAVQTLRNW----TMAATL-LASTAILLGLGMLNVVFTTEQQPPLSKLLNYLGHDSELLWLLKLVILSGNFFFAFFNFTLAIRYYNHVGFMINVSECQEAGVSAEAVTEILQRGANHYTLGMRGYYLAIPLSLWLFGSLWXXXGALLLVVV 203
BLAST of NO17G02680 vs. NCBI_GenBank
Match: WP_002809242.1 (DUF599 domain-containing protein [Nitrosococcus oceani] >ABA57906.1 Protein of unknown function DUF599 [Nitrosococcus oceani ATCC 19707] >EDZ67253.1 conserved hypothetical protein [Nitrosococcus oceani AFC27] >KFI19634.1 hypothetical protein IB75_07415 [Nitrosococcus oceani C-27] >KFI22498.1 hypothetical protein HW44_09350 [Nitrosococcus oceani]) HSP 1 Score: 72.8 bits (177), Expect = 3.600e-9 Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0 Query: 61 IRTRWV--LENHGRTSVAVQTMRDMISITTASATASMAFISIFIGLSKFNLSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTKEVDGKPLSQMLTVNVLARASWHYTLGVRGFFLAAPLVSWLFGS-WMLLGTTVLYVL 225 IR WV + GR +AVQT+R+ T +AT +A +I +GL N++ ++ S+ + + + G+F FFN LA RY ++ FM+N +S +L R + HYTLG+RG++LA PL WLFGS W+L GT +L V+ Sbjct: 42 IRKLWVKRIIQEGRDILAVQTLRNW----TMAATL-LASTAILLGLGLLNVAFTTEQQPQLSKLLNYLGYDSELAWLLKLVILSGDFFFAFFNFTLAIRYYNHTGFMINVPACQEAGVSAKTVTEILQRGANHYTLGMRGYYLAIPLSLWLFGSVWLLGGTLLLLVV 203
BLAST of NO17G02680 vs. NCBI_GenBank
Match: WP_013220644.1 (DUF599 domain-containing protein [Nitrosococcus watsonii] >ADJ28552.1 protein of unknown function DUF599 [Nitrosococcus watsonii C-113]) HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8 Identity = 49/153 (32.03%), Postives = 76/153 (49.67%), Query Frame = 0 Query: 61 IRTRWVLE--NHGRTSVAVQTMRDMISITTASATASMAFISIFIGLSKFNLSSSSLISCPPSEDGTPCSLFEQRIRFARFGLCIGNFVVIFFNMLLATRYAINSTFMLNTKEVDGKPLSQMLTVNVLARASWHYTLGVRGFFLAAPLVSWLFG 212 IR WV + GR +AVQT+R+ A+ +A +I +GL N++ ++ PS+ + + + + G+F FFN LA RY ++ FM+N E +S +L R + HYTLG+RG++LA PL WL G Sbjct: 42 IRKLWVKKVIQEGRDILAVQTLRNW-----TMASTLLASTAILLGLGLLNVAFTTEQQSQPSKLLNYLGYDSELLWLLKLVILSGDFFFAFFNFTLAIRYYNHTGFMINVPECQEAGISAKTVTEILQRGANHYTLGMRGYYLAIPLSLWLLG 189
BLAST of NO17G02680 vs. NCBI_GenBank
Match: XP_009063503.1 (hypothetical protein LOTGIDRAFT_195680 [Lottia gigantea] >ESO85772.1 hypothetical protein LOTGIDRAFT_195680 [Lottia gigantea]) HSP 1 Score: 69.7 bits (169), Expect = 3.000e-8 Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0 Query: 458 VSFLLSFQTIYPLGLDRLKAALLYWGVKCGGTLEERATRLFSLKGVKDMGDINPKLLAKKK 519 +S S++ + LGLDRLK+AL+ GVKCGGTLEERA RLFS KG K M D++P L AK K Sbjct: 246 LSAFSSWEELASLGLDRLKSALMALGVKCGGTLEERAQRLFSTKG-KSMEDLDPNLFAKSK 305
BLAST of NO17G02680 vs. NCBI_GenBank
Match: OQR68560.1 (splicing factor 3A subunit 3-like [Tropilaelaps mercedesae]) HSP 1 Score: 68.6 bits (166), Expect = 6.700e-8 Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 0 Query: 458 VSFLLSFQTIYPLGLDRLKAALLYWGVKCGGTLEERATRLFSLKGVKDMGDINPKLLAKKK 519 +S S + + LGLDRLK+AL+ G+KCGGTLEERA RLFS KG K M DI+ LLAKKK Sbjct: 244 LSAFSSAEELASLGLDRLKSALMALGMKCGGTLEERAQRLFSTKG-KSMEDIDSSLLAKKK 303
BLAST of NO17G02680 vs. NCBI_GenBank
Match: XP_021361268.1 (splicing factor 3A subunit 3-like [Mizuhopecten yessoensis] >OWF46652.1 Splicing factor 3A subunit 3 [Mizuhopecten yessoensis]) HSP 1 Score: 68.6 bits (166), Expect = 6.700e-8 Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0 Query: 458 VSFLLSFQTIYPLGLDRLKAALLYWGVKCGGTLEERATRLFSLKGVKDMGDINPKLLAKKK 519 +S S++ + LGLDRLK+AL+ GVKCGGTLEERA RLFS KG K++ D++P L AK K Sbjct: 246 LSAFSSWEELASLGLDRLKSALMALGVKCGGTLEERAIRLFSTKG-KNLEDLDPALFAKSK 305 The following BLAST results are available for this feature:
BLAST of NO17G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G02680 ID=NO17G02680|Name=NO17G02680|organism=Nannochloropsis oceanica|type=gene|length=3659bpback to top protein sequence of NO17G02680.1 >NO17G02680.1-protein ID=NO17G02680.1-protein|Name=NO17G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bpback to top Synonyms
Publications
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