NO17G02670, NO17G02670 (gene) Nannochloropsis oceanica

Overview
NameNO17G02670
Unique NameNO17G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2652
Alignment locationchr17:779965..782616 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:779965..782616 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO17G02670 vs. NCBI_GenBank
Match: EWM24146.1 (hypothetical protein Naga_100426g2 [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 1.500e-87
Identity = 246/414 (59.42%), Postives = 280/414 (67.63%), Query Frame = 0 
Query:    1 MSFQWDSLRAHTGCLKLFDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYHFQRLSPSMLFARRXXXXXXXXXXXXXXXXXXXXXXXXXRPSVVTENEATVGADLAAASFFSRXXXXXSRSGTGSRLFPGRGRTLVGENGLVVFIEEEGAKVRVMRDRRRKEDLLQAFPSADPCLVEAVWEQAHEVFAAASTILTSLQNSGHHTR---EGWKDGGGDGGQGLRVEDPMVWPSVEEVWGEGGKETRKEGGGEEGWEHVALSTGGEQWVFLGEEKXXXXXXXXXXXXXXXXXXXMSYKAALVSSLMELAEGEEWPMAPVRRTLASLSSYGRKKKARTLQEEEAEEGREEEMEGVGGWMEEYELQKAVAVRTRRSVGRKRLTETGKRRMAAKLVSRAAPRGAGEDGEGDEGIDVW 412
            MSF+WDSLRAHTGCLKLFDLN                             AYHF+R++PSML AR  XXXXXXXXXXXXXXXXXXXXXXX RPSVVTE+    G D  +     R              FPG+GRTLVGENGLVVF++E+ AKV VMRDRR+KEDL QAFP+AD  LV+ VW QA   FAAA TI+TSL+N+GHHTR   EG           LR EDP VWPSVEEVWG    E       E+GWEHV LST GEQWV LGE +     XXXXXXXXXXXXXXM+Y++ L+S+LME+  GEEWP AP RRT  SLSS G +KK R  + EE   G EE     GG++EEYELQKAV VRTRRS+GRKRLTETGKRRMAAKL +R APR AGE  EG++G++VW
Sbjct:    1 MSFRWDSLRAHTGCLKLFDLNDLAVRASRLQLRHEQRQEQLQHAASDHPRAYHFKRVTPSMLTAR--XXXXXXXXXXXXXXXXXXXXXXXLRPSVVTESAMAAGYDTVSMEGSRRERAW----------FPGQGRTLVGENGLVVFVQED-AKVSVMRDRRQKEDLQQAFPTADLTLVDTVWAQARSNFAAACTIMTSLRNNGHHTRKEGEGXXXXXXXXXXXLRTEDPRVWPSVEEVWG----EXXXXXXXEKGWEHVHLSTRGEQWVLLGEGE----GXXXXXXXXXXXXXXMTYRSVLMSNLMEMEGGEEWPAAPPRRTFPSLSSLGTRKKVR--RREEDVMGGEE-----GGFLEEYELQKAVGVRTRRSMGRKRLTETGKRRMAAKLQARRAPRAAGE--EGEDGVEVW 384
[Close]
BLAST of NO17G02670 vs. NCBI_GenBank
Match: XP_005853951.1 (hypothetical protein NGA_0436500, partial [Nannochloropsis gaditana CCMP526] >EKU22411.1 hypothetical protein NGA_0436500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.7 bits (465), Expect = 1.100e-42
Identity = 136/237 (57.38%), Postives = 152/237 (64.14%), Query Frame = 0 
Query:    1 MSFQWDSLRAHTGCLKLFDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYHFQRLSPSMLFARRXXXXXXXXXXXXXXXXXXXXXXXXXRPSVVTENEATVGADLAAASFFSRXXXXXSRSGTGSRLFPGRGRTLVGENGLVVFIEEEGAKVRVMRDRRRKEDLLQAFPSADPCLVEAVWEQAHEVFAAASTILTSLQNSGHHTR---EGWKDGGGDGGQGLRVEDPMVWPSVEE 235
            MSF+WDSLRAHTGCLKLFDLN                             AYHF+R++PSML AR  XXXXXXXXXXXXXXXXXXXXXXX RPSVVTE+    G D  +     R              FPG+GRTLVGENGLVVF++E+ AKV VMRDRR+KEDL QAFP+AD  LV+ VW QA   FAAA TI+TSL+N+GHHTR   EG          GLR EDP VWPSVEE
Sbjct:    1 MSFRWDSLRAHTGCLKLFDLNDLAVRASRLQLRHEQRQEQLQHAASDHPRAYHFKRVTPSMLTAR--XXXXXXXXXXXXXXXXXXXXXXXLRPSVVTESAMAAGYDTVSMEGSRRERAW----------FPGQGRTLVGENGLVVFVQED-AKVSVMRDRRQKEDLQQAFPTADLTLVDTVWAQARSNFAAACTIMTSLRNNGHHTRKEGEGKXXXXXXXXXGLRTEDPRVWPSVEE 224
The following BLAST results are available for this feature:
BLAST of NO17G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24146.11.500e-8759.42hypothetical protein Naga_100426g2 [Nannochloropsi... [more]
XP_005853951.11.100e-4257.38hypothetical protein NGA_0436500, partial [Nannoch... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02670.1NO17G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|271130gene_9335Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100426g2gene6319Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02670.1NO17G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02670 ID=NO17G02670|Name=NO17G02670|organism=Nannochloropsis oceanica|type=gene|length=2652bp
AAGCTCCTTGGTCTCGCGTGGAAAGGGTGTTGTGATGGTGGGGAGGCTAA
ATAGCTTCAAGCGTGTGTGTGCGTAGCGCGTATCAAAGGGATGACTGTGC
AAGGCGCAATTTCTACTCGACACGCTCCTCCTCCTCCAGCGCTTATGATG
TTTGTGTTTGAATCCACATAATCAAGGTTTTGTCCCAAAAGTTGCAGCTC
CGGGAGATCGAGACGTTAGCGTATGACCCACGGGGGTGTTTTGCGTTGCG
CGTATTCGTTGCCTCCAGGGTTTTGAAAATATAAGACCGCCCAGCCGTCC
TTTGACCCTCAATTAAGGCTGTGCTGTCTGAATGTGAACTTGGGCGGTGG
AGTAAGCTTAGGGGATCAGACCAGTGTGTCATTGGTCCCTGCAAGGCGCG
CAACAGCTGTCTTCCTGTCTTTCCCCGCCCGCGCCTGCAGCGTGATTCCA
CTCCCTGCTTACTTCCCGTGACTCATCCAGTCAAACATCTTTCTCCCCCA
CCATCCCCACAACCAGGTCAACGACGATTTCAATATTTTTATATGCAGGG
GTCCTTCGCGGCTGGACTTGATGAATAAGTGTTATTTGCATCAACCCTCC
CCCCCTTCCTGCTTCTTGCTTCGGATCGCCCCCGCCATGCCAGCGCACAT
TAATGTGCAATGCCAGGATACTGTCGAGCACACACACTTCACACCACACA
CATCACCACACTTCACAGGCGCAACAAACGCCAGGCAAGCTGGTCACGAA
GCGTCTAGCTTAAGCTTTCTGTCCCCCGACCCCTCCCCCGACACCGCGCG
GGCGAGATTCCCACGCTCCTCTCCTACAATCCACCAGCAGCATTAACACC
CGCATCGTCGGGGAAAGATGAGCTTCCAATGGGATTCTCTGCGGGCGCAC
ACCGGATGTCTAAAACTCTTCGACCTGAACGACTTGACGGCCCAAGTGCG
CCGACTCCAACTTCGGCAAGAGAAGCAGCAAGAGCAGCAGCAACAAGAAC
AGCCTGATCGTCCACGTGCTTACCATTTTCAACGACTGAGCCCATCTATG
CTCTTCGCCCGTCGAGATGCCGCCAATGCTGCTGCTGCTGCCGCTGCTGC
TGCTCCGTCCTCATCCTCCTCCTCTTCCTCCACTTCCATCCGCCCCTCAG
TTGTGACTGAGAATGAGGCTACTGTTGGTGCTGATCTTGCCGCTGCTTCT
TTCTTCAGTCGTTCTTCTGGCAGCAGTAGCAGGAGTGGCACTGGCAGCAG
GCTTTTCCCGGGGCGAGGCCGCACATTGGTCGGAGAGAATGGGCTGGTGG
TTTTCATTGAAGAGGAGGGGGCGAAAGTCAGGGTAATGAGGGATAGGAGG
AGGAAGGAGGACTTGCTTCAGgtgaggagcgaaagtgggagagaagcaga
gagggagggatgaagggttaggatgaagaggcgccgattttctacgtgta
tgctatcttccattgacccctcccgccctccctccctccctccctccttc
cttccctccctcctcccccgtagGCATTCCCCTCTGCCGACCCCTGCCTC
GTTGAAGCCGTATGGGAGCAGGCCCATGAGGTGTTTGCCGCCGCCTCCAC
CATCCTTACGTCTCTGCAGAACAGCGGGCATCACACGAGGGAGGGATGGA
AGGATGGAGGAGGGGACGGAGGACAAGGGCTGAGGGTGGAGGATCCGATG
GTCTGGCCGTCGGTGGAGGAGGTGTGGGGGGAGGGAGGAAAGGAGACAAG
GAAAGAAGGTGGGGGGGAGGAAGGATGGGAGCATGTGGCGCTCTCAACGG
GGGGGGAGCAGTGGGTGTTCTTGGGAGAGGAGAAGGAGGAGGGGGAAGAG
GGGGGAGGGGGGGAGGGAGGGAGTGAAGGAGGGAAGGAGGTGATGAGCTA
CAAGGCGGCGTTGGTGTCGAGTTTAATGGAGTTGGCGGAGGGAGAGGAAT
GGCCCATGGCACCTGTGAGACGGACTCTAGCGTCCCTCTCTTCTTATGGG
CGGAAAAAGAAGGCAAGGACGTTGCAAGAGGAGGAGGCAGAGGAGGGGAG
GGAGGAAGAGATGGAAGGGGTGGGTGGGTGGATGGAGGAGTATGAGCTAC
AGAAGGCCGTGGCGGTTAGGACGAGGAGGAGTGTGGGGAGGAAGAGGCTG
ACAGAGACGGGAAAGAGGAGGATGGCAGCAAAGTTGGTGTCGAGAGCGGC
GCCGAGAGGGGCAGGGGAGGATGGAGAGGGAGATGAGGGGATTGACGTGT
GGTGAGGAGGGAGGAGGAAGAGGAAAAGGAGGAGAAGGAACCGTCGCAGG
TGGTGTACAAAGGAGGGGAGCGATAAAGGAGGGGGTAAAGGATGGCTCGG
GTGAGGGGACTTACTGTATGTATAGAGTTCTGAATGAGGGAAGGATTACG
TAAGAAAGAATGATTTGGCAGACGGAATGACGAAGAATAGGTTATGAGTA
GGAGAGGGGATCCGTAGATGATATATATGGAGGAAGAAGGGGAAGTAGGC
CTAGAGAGTGACATATAAGAGGATAGAAAAAAGGGGTGTGGAGTAACCTC
CCTTTAGGGGGGGGAACGAGGAGTAGATGAAACCAACTTGTGAACATGAA
GATCACAGACACAAATACAAAGAAGATAGGAGGAAAGTAAGAAGAAGTGC
AA
back to top

protein sequence of NO17G02670.1

>NO17G02670.1-protein ID=NO17G02670.1-protein|Name=NO17G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MSFQWDSLRAHTGCLKLFDLNDLTAQVRRLQLRQEKQQEQQQQEQPDRPR
AYHFQRLSPSMLFARRDAANAAAAAAAAAPSSSSSSSSTSIRPSVVTENE
ATVGADLAAASFFSRSSGSSSRSGTGSRLFPGRGRTLVGENGLVVFIEEE
GAKVRVMRDRRRKEDLLQAFPSADPCLVEAVWEQAHEVFAAASTILTSLQ
NSGHHTREGWKDGGGDGGQGLRVEDPMVWPSVEEVWGEGGKETRKEGGGE
EGWEHVALSTGGEQWVFLGEEKEEGEEGGGGEGGSEGGKEVMSYKAALVS
SLMELAEGEEWPMAPVRRTLASLSSYGRKKKARTLQEEEAEEGREEEMEG
VGGWMEEYELQKAVAVRTRRSVGRKRLTETGKRRMAAKLVSRAAPRGAGE
DGEGDEGIDVW*
back to top
Synonyms
Publications