NO17G02660, NO17G02660 (gene) Nannochloropsis oceanica

Overview
NameNO17G02660
Unique NameNO17G02660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1276
Alignment locationchr17:778357..779632 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:778357..779632 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G02660 vs. NCBI_GenBank
Match: EWM24148.1 (hypothetical protein Naga_100426g4 [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 1.400e-127
Identity = 250/361 (69.25%), Postives = 293/361 (81.16%), Query Frame = 0 
Query:   31 LLPSHAYKPHQPKTPSHNKPSPPLHSRATYLQQSLGRLLLAGGAGLLTPALLSLPQPAAAMVDVGLRKQYVDPTELWQLEYPVGWYLSRRDPTPQSEAPAGIVKASSTVLVVADYTTGATASVVRTSLSSLIKEGMGWGTLMPMFGGLGPISKFEDLLEGKGVAALLMRDRDGQLKVSAMAPPQLGKILESETSANDGFLSRLVDCTPQGKSMEFKVKTPINRIPGSAGSAMMG------------XXXXXXXXXMSDGRLPIRGRPLRKTSDVFKAIGDASPIERRANPSSESVSTTRAGTAPTLIRQQADVRVSKAKAYLRDDGSILTAWVSADKRSWEDPDASARLDAILESFDVAPR 380
            LL S AY+P     P+  K +  L SRA+YLQ S G  LL GG G+  P LL LP+P+AA+VD+GLRKQYVDPTELWQ+EYPVGWY+SRRDP+PQ+EAPAG++KAS+TVLVVADY+TGATASVV+T+L+SL+KEGMGWGTLMP FGGLG +  FED+LEGKG+A LLMRDRDGQLK SAMAPPQ+ + L+++ S NDGFLSRL  C+P G  MEF+V+TP+NRIPGSAG+A+ G            XXXXXXXXX        RGRPL++ SDV+ AI DASPIERRA+PSSESVSTTR  + PTLIRQQADVR+SKAKAYLR DGSILTAWVSA++ SWEDPDASARLDAIL SFDVAPR
Sbjct:   47 LLASLAYRP-----PAPQKSTSCLRSRASYLQHSWGHALLVGGVGVAAPTLLGLPKPSAALVDIGLRKQYVDPTELWQVEYPVGWYVSRRDPSPQNEAPAGLMKASATVLVVADYSTGATASVVKTNLASLVKEGMGWGTLMPQFGGLGTVENFEDILEGKGLATLLMRDRDGQLKASAMAPPQMNRALDTDMSVNDGFLSRLTACSPVGGVMEFEVRTPVNRIPGSAGAAIRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGRPLKEVSDVWSAIEDASPIERRASPSSESVSTTRKPSPPTLIRQQADVRLSKAKAYLRADGSILTAWVSANRSSWEDPDASARLDAILASFDVAPR 402
The following BLAST results are available for this feature:
BLAST of NO17G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24148.11.400e-12769.25hypothetical protein Naga_100426g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02660.1NO17G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606432gene_9334Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100426g4gene6320Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02660.1NO17G02660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02660 ID=NO17G02660|Name=NO17G02660|organism=Nannochloropsis oceanica|type=gene|length=1276bp
ACAAATAGGTGAAATGGCCCCAGCACCACCGGTCCGGCGGCTCACTGGGC
GCGCCATGATCATCAGCCTCCCCCAAATGTTCCTATCGCTCTTCGTCCTC
GCGCTCCTTCCCTCTCACGCCTACAAGCCACACCAGCCCAAGACCCCGTC
CCACAACAAGCCCTCTCCACCCTTGCACTCCCGTGCCACCTATCTCCAAC
AGTCCCTGGGCCGTCTCCTCCTCGCGGGCGGAGCCGGCCTCCTGACCCCC
GCCCTCCTCTCCCTCCCCCAGCCCGCTGCCGCCATGGTAGACGTGGGTCT
TCGTAAACAATACGTGGATCCCACCGAGCTGTGGCAGCTTGAATATCCAG
TGGGATGGTACTTGTCTCGTCGTGACCCCACGCCGCAAAGCGAGGCCCCC
GCGGGCATTGTCAAGGCGAGTTCCACCGTCCTTGTCGTCGCCGACTACAC
CACAGGTGCCACCGCTAGTGTGGTGCGCACAAGCCTGTCCTCGCTCATCA
AGGAAGGGATGGGGTGGGGTACGCTCATGCCTATGTTTGGTGGGCTGGGG
CCGATCTCCAAATTCGAAGATTTGCTGGAAGGAAAGGGCGTGGCGGCATT
ATTGATGCGGGATCGAGATGGGCAGCTCAAGGTCTCAGCTATGGCACCTC
CTCAACTAGGCAAGATACTGGAAAGTGAAACAAGCGCCAATGACGGCTTT
TTGTCGCGGCTGGTGGATTGTACACCACAGGGTAAATCGATGGAGTTCAA
GGTTAAGACGCCCATCAATCGTATTCCTGGGAGTGCGGGGAGCGCCATGA
TGGGAGGGGCTGGACAAGGGGGAGGAGGAGGGATGAGTGACGGGAGGCTG
CCGATACGTGGCCGTCCGTTACGAAAAACGTCGGACGTGTTCAAAGCAAT
TGGAGATGCCAGTCCGATTGAACGGCGGGCGAACCCGTCGAGTGAGAGCG
TGAGCACGACGCGGGCTGGAACGGCCCCGACATTGATTAGGCAACAGGCG
GATGTGAGGGTGAGTAAGGCCAAGGCGTACTTGAGAGATGATGGAAGCAT
TCTTACGGCATGGGTATCGGCAGACAAGCGGAGTTGGGAAGACCCTGATG
CTTCGGCGCGGTTGGATGCTATTTTAGAATCGTTTGACGTGGCACCACGA
TAGGGTGAGATAATGGGGCAAATGCTAAAGGAGAGGAGGTCGGGGAAGAG
ACGCGTAGTGTACTGTAGAGATTGAAGGCGCGGGAAAACAATGATAAAAA
CATTAAGAAATGCTTGGGAATTTCAC
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protein sequence of NO17G02660.1

>NO17G02660.1-protein ID=NO17G02660.1-protein|Name=NO17G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MAPAPPVRRLTGRAMIISLPQMFLSLFVLALLPSHAYKPHQPKTPSHNKP
SPPLHSRATYLQQSLGRLLLAGGAGLLTPALLSLPQPAAAMVDVGLRKQY
VDPTELWQLEYPVGWYLSRRDPTPQSEAPAGIVKASSTVLVVADYTTGAT
ASVVRTSLSSLIKEGMGWGTLMPMFGGLGPISKFEDLLEGKGVAALLMRD
RDGQLKVSAMAPPQLGKILESETSANDGFLSRLVDCTPQGKSMEFKVKTP
INRIPGSAGSAMMGGAGQGGGGGMSDGRLPIRGRPLRKTSDVFKAIGDAS
PIERRANPSSESVSTTRAGTAPTLIRQQADVRVSKAKAYLRDDGSILTAW
VSADKRSWEDPDASARLDAILESFDVAPR*
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Synonyms
Publications