NO17G02640, NO17G02640 (gene) Nannochloropsis oceanica

Overview
NameNO17G02640
Unique NameNO17G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2699
Alignment locationchr17:771235..773933 +

Link to JBrowse

Properties
Property NameValue
DescriptionModifier of rudimentary, Modr
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:771235..773933 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000813ESCRT I complex
Vocabulary: Biological Process
TermDefinition
GO:0032509endosome transport via multivesicular body sorting pathway
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
IPR037859Vps37
IPR009851Mod_r
Homology
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BLAST of NO17G02640 vs. NCBI_GenBank
Match: XP_005853949.1 (hypothetical protein NGA_0436300, partial [Nannochloropsis gaditana CCMP526] >EKU22409.1 hypothetical protein NGA_0436300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 188.3 bits (477), Expect = 5.900e-44
Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0 
Query:   62 MFGFGRNRRAADRDLDALKRQQIDGLKQAVSTIRAVNSGQQDATVFDLPLPSASATAVLRVSLPSSFPDHPPSLRLLGLSVRHPWVDGQGVVSCHPKLNPWHASNSLAEVCVSVMQEITKTVGGSPIVGV-PGDRWG 198
            MF FGR+RR  DRDLDALKRQQI+ LKQAV T RAVNS   D+++FDLP+PSASATAVLRVSLP +FPD PPSLRLLGL VRH W+D  G V  HPKL+PW +++SLAEVC SVMQEITKTVGGSP VGV    +WG
Sbjct:   44 MFPFGRSRR-PDRDLDALKRQQIEALKQAVPTARAVNS---DSSLFDLPIPSASATAVLRVSLPHNFPDEPPSLRLLGLGVRHAWIDATGAVVRHPKLSPWQSTHSLAEVCTSVMQEITKTVGGSPTVGVGVAVQWG 176
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BLAST of NO17G02640 vs. NCBI_GenBank
Match: EWM24147.1 (Modifier of rudimentary, Modr, partial [Nannochloropsis gaditana])

HSP 1 Score: 138.3 bits (347), Expect = 7.000e-29
Identity = 86/164 (52.44%), Postives = 99/164 (60.37%), Query Frame = 0 
Query:  258 LPPSLLAASLDELNNLLSDEVAFSMFLSNTREVKECNRQLEAIRRTNADIAQETLEKRGAVTEAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEECAKALVSGEMDVAEWQEKYLKERKLFHARSAKLEKIQGMRGGEGK 422
            LPPSLL+AS++ELN LL+DEVAFS+FLSN REVKECNRQLEAIRRTNAD+A+ETLEKR AVT  RE                                                  SEECA+A V+GE  +  WQ +YLKERKLFH RSAKLEKIQ +R  EG+
Sbjct:    2 LPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERG--SEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVR-SEGR 162
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BLAST of NO17G02640 vs. NCBI_GenBank
Match: CDS14276.1 (hypothetical protein LRAMOSA06446 [Lichtheimia ramosa])

HSP 1 Score: 64.7 bits (156), Expect = 9.900e-7
Identity = 98/349 (28.08%), Postives = 154/349 (44.13%), Query Frame = 0 
Query:   79 LKRQQIDGLKQAVSTIRAVNSGQQDATVFDLPLPSASATAVLRVSLPSSFPDHPPSLRLLGLSVRHPWVDGQGVVSCHPKLNPWHASN-SLAEVCVSVMQEITKTVGGSPIVGVPGDRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSVVLPPLP-----NALP--------PSLLAASLDELNNLLSDEVAFSMFLSNTREVKECNRQLEAIRRTNADIAQETLEKRGAVTEAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEECAKALVSGEMDVAEWQEKYLKERKLFHARSAKLEKIQ 414
            +K+QQI  L     T+  +  GQ    +++LP P    +A L V+LP  FPD PP + +    +RHPW++   VV  H  L+ W+AS   L +    +++E T+          P  R G                                                RP    PP+P     +A P         S+++ S+DEL  LLS++VAF +F ++   V+      E +R  N ++A + L +  ++ + R+     XXXXXXXXXXXXXXXXXXXXX                        SE  A++ + G +D   + +++ + RK++H R++KLE+ Q
Sbjct:    7 VKQQQIASLYSHNPTVTTIIEGQ----MYELPCPMNGVSAALLVNLPPEFPDVPPIITVSPTGMRHPWIESDVVV--HDALH-WNASQVQLGKWVHDIIEEFTQR---------PPARKG-----------------------------------GTNGEAVEEGYGHRPP---PPIPSNTATSATPLALSMAEYTSIVSRSMDELEELLSNDVAFELFFNSLERVQNMKTVQEELRNGNVNLANKNLAQESSLQQLRDQVRELXXXXXXXXXXXXXXXXXXXXXFDRFSSATMMTRLKASIHESDEL-SESVAQSFLDGNLDHDGFVKQFRELRKVYHIRASKLERSQ 300
The following BLAST results are available for this feature:
BLAST of NO17G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853949.15.900e-4472.26hypothetical protein NGA_0436300, partial [Nannoch... [more]
EWM24147.17.000e-2952.44Modifier of rudimentary, Modr, partial [Nannochlor... [more]
CDS14276.19.900e-728.08hypothetical protein LRAMOSA06446 [Lichtheimia ram... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02640.1NO17G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606426gene_9331Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100426g6gene6322Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02640.1NO17G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02640 ID=NO17G02640|Name=NO17G02640|organism=Nannochloropsis oceanica|type=gene|length=2699bp
TAGATTAGCGACATATCACACTTTCTTCTCCTTTCTTTTGACATGACCTC
ACGTTAGCTTCCCCCTCCTTCTCCTCTCACCCCTCGACCAGCCTTCTTCC
CTCCTCCTCCCCGAGTATCCCTGCCAACAACCGTCTCACTTGCTCCTTCT
CCGTCTTCCCCATCGCTTCTACTCCCTCTCCCCCTCCCTCCCCCCCTTCC
TCGAGTACTTCTGGATGCCTGGCTCGCTCAGTTAATGCACATGCCACTGC
CATCGCTTCCCTTTTCACTCCCTCCCTTTCCTTCTCTGTAGCCAAGGGTA
GGCCCGACGGCTGCCTGTCCCCAAGGGCCTGCAGGGCACTATGTGATAAC
GAAATGAGAAGGGAGGGAGGAATGTACATGACGTGAACGAAGGGACGGAG
GCGTTTCATTCACACTCCCCTCACTTGCCCCTGCACCCTCTCCATCCTTC
CTGCTTTACCTCGCCGCGCCCAACAGCCGTCCTAGCGCCTCTCCCGCCTT
GATGCCCTCGCCGAATCCTTCGTCAAATCCTTCTTGCAAGCCCAAGGCAT
GTCCTGCAGATGCCCCGTCTCTGTAGCCTGCGTCGTGGAGCACACGTTGC
TGCTCCTCCGGGGGAGGCAATAGAGGGAGGGAGACAGGCCCGCCAGCGGC
GGATGGCACATTGTTGAAGGGGTTCAGCTGCCCTTCAATGTCGTCGTCGT
CGTCCCTTTCCATGCTGTGTCTTGCAAATGTGTGAAAAAGTGCGAAGAGG
ACGGGGATTGAAGGATGAGACAGGAGGTCAGCGTTCTTTTTTTGAAGGGT
GATGAAGCTTGTCCTGACCGCCTTGCCAAACCAAAATACGGCCACAAATG
ACACTTTCATACTTTCTACCACGACCCGGTCCTCCTTCTCCTTTATGTAT
ATAACGCATCACACCTCCTCTTCATTGCCCTTATCCACCCGTCACAGGCG
GAGGCAGACCAGCTCCCTCCCCACTCCAAAAAATATGTTCGGCTTCGGCC
GCAACCGCCGGGCTGCAGACCGAGACCTTGATGCCTTGAAGCGGCAGCAA
ATAGATGGGCTCAAGCAAGCAGTGTCTACCATCAGGGCTGTCAACTCGgt
atgtgcgcgagggacaagggggggatttatgtcgtgttggcaagtctctc
ggaagatgagggatgctcccccggcagcacttagacgctcaaatatgtgc
ctcgaggcccctgcgcgcaccaatggcttcccagtcacatggcgagtgct
atcgtgcgtgtatccatcctattcttgacgcagtgcgtgtggacgactcc
cttcacccaatcgtttcacgtcccttctctcctcaaccccttcacccttc
cctctctctctccctccctccctccctcccttcctccctccctccccccc
cagGGCCAGCAAGATGCCACCGTCTTCGACCTCCCCCTACCATCCGCCTC
CGCCACTGCCGTCCTTCGCGTTTCCCTTCCCAGTTCTTTCCCTGACCATC
CTCCCTCCCTCCGCCTTCTAGGCCTCAGCGTGCGTCATCCCTGGGTCGAC
GGCCAAGGCGTCGTGTCATGCCACCCCAAATTAAACCCGTGGCACGCCTC
GAACTCGCTGGCCGAGGTGTGTGTGAGCGTCATGCAAGAAATTACCAAGA
CTGTGGGCGGTTCTCCCATTGTAGGAGTGCCGGGGGACAGGTGGGGAGGA
GGGGTGGGAGGAGGGGGACAAGGGGGAGGTGGAGGAGGTGGTTTGGGACC
GATGCAGCCACCGCCATTGCGAGGCGGAGGTGGAGATGGGAGTGGAATGA
TACCCGGGGGATCCACCCATTCGGTATCTTCCTCCCCTCCTCGTCCAAGC
GTCGTCCTTCCCCCCCTCCCCAACGCCCTCCCTCCGTCCCTCCTTGCTGC
CTCCTTGGACGAGCTCAACAACCTCCTCTCCGACGAGGTAGCCTTCTCCA
TGTTCCTCTCCAACACACGGGAAGTAAAGGAATGCAACCGGCAGCTGGAG
GCCATCCGGAGGACGAACGCTGATATAGCTCAGGAGACTTTGGAGAAGCG
AGGGGCCGTGACAGAGGCGAGGGAGGAGATGCGACAAGCCCTAGAGATTC
TGAGGGAGATCGAAAAAGCCTATGAACGGAAGGTGGGGAGGGTAGGGGAG
AAGGGTGGGAGGGAAGGAGGGATAGAGGGGGTATATCGGGCGCTGGAGAA
GGAGGCGGCGGAGAGTGAGAAGAGGAGCGAGGAATGCGCGAAAGCTTTGG
TGTCAGGGGAGATGGACGTGGCAGAATGGCAGGAAAAATACCTGAAGGAG
AGGAAATTGTTTCACGCACGCAGCGCAAAACTGGAGAAGATACAGGGGAT
GAGGGGGGGGGAAGGTAAGAGTGGGAGGAGGAGGGGGGGGGGGCTCGGTG
TTGATAAGCGAGGGATGATTAAGGAGGAGGAGGAGGAGGAGGTGGTGGTG
GTGGAGGAGGAGCGGATGACGAGATTTTCAAACGGAAACAATAATAATAA
CAATTATAATAATAGCAATAATCCAAGCAGTTTTAGATGGAGACTTTTAA
ATCACAAAATACAAATGAATGAAATGGAAGAAAAAGATCTTTGCGTTGAA
GCGTTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCT
TCTTCTTCTTCTCCTCCTCCTCCTCCTTCACCTCTTCATCTCAGGTTGA
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protein sequence of NO17G02640.1

>NO17G02640.1-protein ID=NO17G02640.1-protein|Name=NO17G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MKLVLTALPNQNTATNDTFILSTTTRSSFSFMYITHHTSSSLPLSTRHRR
RQTSSLPTPKNMFGFGRNRRAADRDLDALKRQQIDGLKQAVSTIRAVNSG
QQDATVFDLPLPSASATAVLRVSLPSSFPDHPPSLRLLGLSVRHPWVDGQ
GVVSCHPKLNPWHASNSLAEVCVSVMQEITKTVGGSPIVGVPGDRWGGGV
GGGGQGGGGGGGLGPMQPPPLRGGGGDGSGMIPGGSTHSVSSSPPRPSVV
LPPLPNALPPSLLAASLDELNNLLSDEVAFSMFLSNTREVKECNRQLEAI
RRTNADIAQETLEKRGAVTEAREEMRQALEILREIEKAYERKVGRVGEKG
GREGGIEGVYRALEKEAAESEKRSEECAKALVSGEMDVAEWQEKYLKERK
LFHARSAKLEKIQGMRGGEGKSGRRRGGGLGVDKRGMIKEEEEEEVVVVE
EERMTRFSNGNNNNNNYNNSNNPSSFRWRLLNHKIQMNEMEEKDLCVEAF
ILLLLLLLLLLLLLLLLLLLLLLLHLFISG*
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Synonyms
Publications