NO17G02630, NO17G02630 (gene) Nannochloropsis oceanica

Overview
NameNO17G02630
Unique NameNO17G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1355
Alignment locationchr17:771235..772589 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:771235..772589 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038881Yae1-like
IPR019191Essential_protein_Yae1_N
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02630.1NO17G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606422gene_9330Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02630.1NO17G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02630 ID=NO17G02630|Name=NO17G02630|organism=Nannochloropsis oceanica|type=gene|length=1355bp
AGAGGGAAGGGTGAAGGGGTTGAGGAGAGAAGGGACGTGAAACGATTGGG
TGAAGGGAGTCGTCCACACGCACTGCGTCAAGAATAGGATGGATACACGC
ACGATAGCACTCGCCATGTGACTGGGAAGCCATTGGTGCGCGCAGGGGCC
TCGAGGCACATATTTGAGCGTCTAAGTGCTGCCGGGGGAGCATCCCTCAT
CTTCCGAGAGACTTGCCAACACGACATAAATCCCCCCCTTGTCCCTCGCG
CACATACCGAGTTGACAGCCCTGATGGTAGACACTGCTTGCTTGAGCCCA
TCTATTTGCTGCCGCTTCAAGGCATCAAGGTCTCGGTCTGCAGCCCGGCG
GTTGCGGCCGAAGCCGAACATATTTTTTGGAGTGGGGAGGGAGCTGGTCT
GCCTCCGCCTGTGACGGGTGGATAAGGGCAATGAAGAGGAGGTGTGATGC
GTTATATACATAAAGGAGAAGGAGGACCGGGTCGTGGTAGAAAGTATGAA
AGTGTCATTTGTGGCCGTATTTTGGTTTGGCAAGGCGGTCAGGACAAGCT
TCATCACCCTTCAAAAAAAGAACGCTGACCTCCTGTCTCATCCTTCAATC
CCCGTCCTCTTCGCACTTTTTCACACATTTGCAAGACACAGCATGGAAAG
GGACGACGACGACGACATTGAAGGGCAGCTGAACCCCTTCAACAATGTGC
CATCCGCCGCTGGCGGGCCTGTCTCCCTCCCTCTATTGCCTCCCCCGGAG
GAGCAGCAACGTGTGCTCCACGACGCAGGCTACAGAGACGGGGCATCTGC
AGGACATGCCTTGGGCTTGCAAGAAGGATTTGACGAAGGATTCGGCGAGG
GCATCAAGGCGGGAGAGGCGCTAGGACGGCTGTTGGGCGCGGCGAGgtaa
agcaggaaggatggagagggtgcaggggcaagtgaggggagtgtgaatga
aacgcctccgtcccttcgttcacgtcatgtacattcctccctcccttctc
atttcgttatcacatagTGCCCTGCAGGCCCTTGGGGACAGGCAGCCGTC
GGGCCTACCCTTGGCTACAGAGAAGGAAAGGGAGGGAGTGAAAAGGGAAG
CGATGGCAGTGGCATGTGCATTAACTGAGCGAGCCAGGCATCCAGAAGTA
CTCGAGGAAGGGGGGGAGGGAGGGGGAGAGGGAGTAGAAGCGATGGGGAA
GACGGAGAAGGAGCAAGTGAGACGGTTGTTGGCAGGGATACTCGGGGAGG
AGGAGGGAAGAAGGCTGGTCGAGGGGTGAGAGGAGAAGGAGGGGGAAGCT
AACGTGAGGTCATGTCAAAAGAAAGGAGAAGAAAGTGTGATATGTCGCTA
ATCTA
back to top

protein sequence of NO17G02630.1

>NO17G02630.1-protein ID=NO17G02630.1-protein|Name=NO17G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MKVSFVAVFWFGKAVRTSFITLQKKNADLLSHPSIPVLFALFHTFARHSM
ERDDDDDIEGQLNPFNNVPSAAGGPVSLPLLPPPEEQQRVLHDAGYRDGA
SAGHALGLQEGFDEGFGEGIKAGEALGRLLGAASALQALGDRQPSGLPLA
TEKEREGVKREAMAVACALTERARHPEVLEEGGEGGGEGVEAMGKTEKEQ
VRRLLAGILGEEEGRRLVEG*
back to top
Synonyms
Publications