NO17G02620, NO17G02620 (gene) Nannochloropsis oceanica

Overview
NameNO17G02620
Unique NameNO17G02620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2912
Alignment locationchr17:768323..771234 +

Link to JBrowse

Properties
Property NameValue
Descriptionreplication factor C subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:768323..771234 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
IPR013748Rep_factorC_C_dom
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Homology
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: CBN74720.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 409.5 bits (1051), Expect = 1.100e-110
Identity = 205/335 (61.19%), Postives = 260/335 (77.61%), Query Frame = 0 
Query:   21 SVPAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            S  A+   A  +     +PWVEKYRPS L++LVAHE+I+ IL +LI  N+LPHLLFYGPPGTGKTSTILACAK++YG  ++  M LELNASD+RGIDVVR QIKEFAGTKRLFS+GVKLVILDEAD +TNDAQFALRRVIEKYTK+TRFC+ICNYV+KIIPALQSRCT+FRFAPL P Q++GR+ HV ++E +T+    V+A++RLG GDMRRVLN++Q+T MAYQK +DE   YL +  PL  D++ + +ALL  +FKDAF+ I K +  KGYSL D++ ++   V  ++ P  V+ H+   +++ E  LA G +ERLQLG +VGAFA AR MM
Sbjct:   46 SAAAVARLAHRETARQTLPWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYG-ADFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQSTHMAYQK-VDERHAYLCAAAPLKEDMEYIRNALLTASFKDAFDGILKLTTAKGYSLGDIVQELALKVMEIELPAAVMVHLLDEMSNTEERLAHGGSERLQLGSLVGAFATARHMM 378
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: OWZ14295.1 (Replication factor C subunit 5 [Phytophthora megakarya])

HSP 1 Score: 397.1 bits (1019), Expect = 5.700e-107
Identity = 193/339 (56.93%), Postives = 249/339 (73.45%), Query Frame = 0 
Query:   17 KKKASVPAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            K     PA +  ++ ++     PWVEKYRPS L DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG  NYG+M LELNASD+RGIDVVR QIKEFAGTK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN RFCLICNYVSKIIPALQSRCTRFRFAPL   QV GR+ H+A+ E L +     +A++RLG GDMRR+LN++QAT+MA+   ++E  +YL +GNPLP D++++ H L ++++  A  +  +   LKGY+ SD+L DV    + ++ P     H+Y  LA +E+ L++G  E LQL  +V  FA  R  M
Sbjct:    2 KSAEDAPAFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYG-NNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNETQVSGRVKHIAQLEKLNMTEDGFKAILRLGQGDMRRILNILQATSMAHD-VVNEANVYLCTGNPLPKDIESVTHWLFNESYPTAVRNCAEMQKLKGYATSDILQDVYRCTTELELPPRCRMHLYDELAKLEHRLSNGTTEELQLASLVAVFAIVREQM 338
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: GAX95668.1 (replication factor C subunit 5 [Pythium insidiosum])

HSP 1 Score: 394.0 bits (1011), Expect = 4.800e-106
Identity = 193/333 (57.96%), Postives = 250/333 (75.08%), Query Frame = 0 
Query:   23 PAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            P  +  ++ D+     PWVEKYRPS L DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG  NYG+M LELNASD+RGIDVVR QIKEFAGTK+LFS+GVKL+ILDEAD +TNDAQF+LRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPL   QV+ R+ H+A+ E L +     +A++RLG GDMRR+LN+MQAT+MAY  ++DE  +Y+++GNPLP D++ ++  LL++ +  A     +   LKGY+ +D+L DV      ++ P     ++Y  LA +E+ LA+G++E LQL  +V  F  AR  M
Sbjct:   15 PRFEGISSRDRATESWPWVEKYRPSSLNDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYG-KNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGVKLIILDEADSMTNDAQFSLRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLHENQVKDRVQHIAQLERLNMTEDGFKAILRLGQGDMRRILNIMQATSMAYD-TVDETNVYMTTGNPLPKDIETIVGWLLNEGYASAVQKCAEMQKLKGYATTDILQDVYKFTLDLELPPGCRMYLYDELAKLEHRLANGSSEDLQLASLVSVFFLARERM 345
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: XP_002998971.1 (replication factor C subunit 5 [Phytophthora infestans T30-4] >EEY69117.1 replication factor C subunit 5 [Phytophthora infestans T30-4])

HSP 1 Score: 392.9 bits (1008), Expect = 1.100e-105
Identity = 193/339 (56.93%), Postives = 248/339 (73.16%), Query Frame = 0 
Query:   17 KKKASVPAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            K     P+ +  ++ ++     PWVEKYRPS L DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG  NYG+M LELNASD+RGIDVVR QIKEFAGTK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN RFCLICNYVSKIIPALQSRCTRFRFAPL   QV GR+ H+A+ E L +     +A++RLG GDMRR+LN++QAT+MA+   +DE  +YL +GNPLP D++++   L +++F  A     +   LKGY+ SD+L DV    + ++ P     ++Y  LA +E+ L++G  E LQL  +V  FA AR  M
Sbjct:    7 KSAEDAPSFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYG-KNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIAQLEKLNMTEDGFKAILRLGQGDMRRILNILQATSMAHD-IVDEANVYLCTGNPLPKDIESVTQWLFNESFTAAVRKCAEMQKLKGYATSDILQDVYRYTTELELPPRCRMYLYDELAKLEHRLSNGTTEELQLASLVAIFAIARNQM 343
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: XP_008911394.1 (hypothetical protein PPTG_16313 [Phytophthora parasitica INRA-310] >ETI37853.1 hypothetical protein F443_16282 [Phytophthora parasitica P1569] >ETK78094.1 hypothetical protein L915_15830 [Phytophthora parasitica] >ETL31524.1 hypothetical protein L916_15726 [Phytophthora parasitica] >ETL84765.1 hypothetical protein L917_15531 [Phytophthora parasitica] >ETM37921.1 hypothetical protein L914_15672 [Phytophthora parasitica] >ETN03278.1 hypothetical protein PPTG_16313 [Phytophthora parasitica INRA-310] >ETO66624.1 hypothetical protein F444_16276 [Phytophthora parasitica P1976] >ETP07774.1 hypothetical protein F441_16105 [Phytophthora parasitica CJ01A1] >ETP35805.1 hypothetical protein F442_16135 [Phytophthora parasitica P10297] >KUF82648.1 Replication factor C subunit 5 [Phytophthora nicotianae] >KUF91599.1 hypothetical protein AM588_10003190 [Phytophthora nicotianae])

HSP 1 Score: 392.5 bits (1007), Expect = 1.400e-105
Identity = 193/339 (56.93%), Postives = 247/339 (72.86%), Query Frame = 0 
Query:   17 KKKASVPAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            K     PA +  ++ ++     PWVEKYRPS L DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG  NYG+M LELNASD+RGIDVVR QIKEFAGTK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN RFCLICNYVSKIIPALQSRCTRFRFAPL   QV GR+ H+A+ E L +     +A++RLG GDMRR+LN++QAT+MA+   ++E  +YL +GNPLP D++++   L ++ F  A     +   LKGY+ SD+L DV      ++ P     ++Y  LA++E+ L++G  E LQL  +V  FA AR  M
Sbjct:    7 KSAEDAPAFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYG-KNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIAQLEKLNMTEDGFKAILRLGQGDMRRILNILQATSMAHD-VVNEANVYLCTGNPLPKDIESVTQWLFNENFATAVRKCAEMQKLKGYATSDILQDVYRYTMELELPPRCRMYLYDELANLEHRLSNGTTEELQLASLVAIFAIAREQM 343
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: XP_009034370.1 (hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens] >EGB10782.1 hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens])

HSP 1 Score: 388.3 bits (996), Expect = 2.600e-104
Identity = 194/316 (61.39%), Postives = 233/316 (73.73%), Query Frame = 0 
Query:   39 PWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAM 355
            PWVEKYRPS L +LVAH++IIS+L RLIE ++LPH L YGPPGTGKTSTILA AK MYG   Y +MTLELNASD+RGIDVVR QIKEFAGT+RLFS G+KL+ILDEAD +T DAQFALRRVIEKYT N RFCLICNY +KIIPALQSRCT+FRFAPLAP Q+ GR+A +  RE + + TKA  AL+ LG GDMRRVLNV+QA A+AY   +  E+++L +GNPLP  VDA+  +LL+DTF  A   +      +GY+L D+L  +   V A   PN    H+ + LADIEY  A      LQL  +V AF  AR +
Sbjct:  426 PWVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYG-AGYKSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKGIKLIILDEADMMTKDAQFALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENVAIGTKATDALLELGKGDMRRVLNVLQAAAVAYPGEVTYESLFLVTGNPLPDHVDAIFASLLNDTFDAARTLLGDLCKTQGYALPDLLTRINAKVVAAKLPNAAKAHVLTKLADIEYRCAFATTTELQLSSLVSAFVVARGL 740
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: XP_024571525.1 (replication factor c subunit 5 [Plasmopara halstedii] >CEG35156.1 replication factor c subunit 5 [Plasmopara halstedii])

HSP 1 Score: 383.6 bits (984), Expect = 6.500e-103
Identity = 190/338 (56.21%), Postives = 246/338 (72.78%), Query Frame = 0 
Query:   18 KKASVPAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            K    PA +  ++ ++     PWVEKYRPS L DL+AH++II+ L RLI+ ++LPHLLFYGPPGTGKTS I+A A+++YG  NY +M  ELNASD+RGIDVVR QIKEFAGTK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN RFCLICNYVSKIIPALQSRCTRFRFAPL   QV  R+ H+AE E L +     +A++RLG GDMRR+LN++QAT+MA+   I+E  +YL +GNPLP D++ +   L +++F  A     +   +KGY+ SD+L DV      +D P +   ++Y  LA++E+ L++G  E LQL  +V  FA AR  M
Sbjct:    7 KAMEEPAFEGISSRNRSTESWPWVEKYRPSSLNDLIAHQDIIATLNRLIDAHKLPHLLFYGPPGTGKTSMIIAAARRLYG-KNYSSMVQELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNENQVSDRVKHIAELEKLNMTEDGFKAILRLGQGDMRRILNILQATSMAHD-VINEANVYLCTGNPLPQDIELVTRWLFNESFTTAVRKCAEMQKIKGYATSDILQDVYRYTMELDLPPQCRMYLYDELANVEHRLSNGTTEGLQLTSLVAIFAIARDQM 342
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: XP_008865978.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW04541.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 375.9 bits (964), Expect = 1.400e-100
Identity = 189/333 (56.76%), Postives = 245/333 (73.57%), Query Frame = 0 
Query:   23 PAIQPAATPDQLFNGMPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTNYGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYARAMM 356
            P+    ++ ++  +  PWVEKYRPS L DL+AH +IIS L RLI+  +LPHLLFYGPPGTGKTS ILA A+++YG  NY +M LELNASD+RGI+VVR QIKEFAGTK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN RFCLICNYVSKIIPALQSRCTRFRF+PLA  QV+ R+ H+A+ E + +     QA++RLG GDMRR+LN++QAT MA+   ++E  +YL +GNPLP+D+DAM + L  D+F+           LKGY+  D+L  V   V+ ++ P      I+  LA +E+ LA+G +E LQL  +V  F  AR ++
Sbjct:    8 PSFAGISSKNRTTDNWPWVEKYRPSSLDDLIAHADIISTLNRLIDAQKLPHLLFYGPPGTGKTSMILAAARRLYG-NNYASMVLELNASDDRGINVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFSPLAEHQVKDRVEHIAKLEKVDMTPDGFQAVLRLGGGDMRRILNILQATNMAHD-VVNETNVYLCTGNPLPSDIDAMCNWLWTDSFESCVKQCLDLQKLKGYATMDLLQQVYLNVTELELPPAARMFIHDQLAHLEHRLATGTSEVLQLMSLVSIFISARKLI 338
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: GAX28698.1 (replication factor C subunit 3/5 [Fistulifera solaris])

HSP 1 Score: 374.0 bits (959), Expect = 5.100e-100
Identity = 184/317 (58.04%), Postives = 238/317 (75.08%), Query Frame = 0 
Query:   38 MPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTN-YGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMA-YQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYAR 353
            MPWVEKYRP  L+DLVA ++I++ +T LI+   LPHLL YGPPGTGKTSTI+A AK+MYG+T  Y +MTLELNASD RGIDVVR +IKEFAGT++LF  G+KL+ILDEAD +T+DAQFALRR++EKY+KN RFCLICNYVSKIIPALQSRCTRFRF+PLA  Q++GR+ HVA  E        +QA++RL  GDMRRVLN++QATAM+ + + +DE A+YL+SG PLP D+D ++  LL+  F  AF  I      KGY+L+DVL D+   +  +D  +  LG +   ++ +E+ LA G +ER+QL  +VG F   R
Sbjct:   12 MPWVEKYRPEKLEDLVAQDDIVASITSLIDSGNLPHLLLYGPPGTGKTSTIVAAAKRMYGSTKAYNSMTLELNASDARGIDVVRNEIKEFAGTQQLFLKGIKLIILDEADAMTSDAQFALRRIMEKYSKNCRFCLICNYVSKIIPALQSRCTRFRFSPLAADQIQGRLEHVATSEHCPTTPDGIQAILRLSGGDMRRVLNLLQATAMSHHDRPVDETAVYLTSGAPLPKDIDRILEWLLNHDFAAAFRDIHHLCTTKGYALTDVLQDLTDKILCLDMDSVPLGLLLDGMSAVEHRLALGTDERIQLASLVGVFVQTR 328
[Close]
BLAST of NO17G02620 vs. NCBI_GenBank
Match: GAX23135.1 (replication factor C subunit 3/5 [Fistulifera solaris])

HSP 1 Score: 373.6 bits (958), Expect = 6.700e-100
Identity = 183/317 (57.73%), Postives = 238/317 (75.08%), Query Frame = 0 
Query:   38 MPWVEKYRPSGLKDLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTN-YGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQVEGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMA-YQKSIDEEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVLNDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAYAR 353
            MPWVEKYRP  L+DLVA ++I++ +T LI+   LPHLL YGPPGTGKTSTI+A AK+MYG+T  Y +MTLELNASD RGIDVVR +IKEFAGT++LF  G+KL+ILDEAD +T+DAQFALRR++EKY+KN RFCLICNYVSKIIPALQSRCTRFRF+PLA  Q++GR+ HVA  E        +QA++RL  GDMRRVLN++QATAM+ + + +DE A+YL+SG PLP D+D ++  L++  F  AF  I      KGY+L+DVL D+   +  +D  +  LG +   ++ +E+ LA G +ER+QL  +VG F   R
Sbjct:   12 MPWVEKYRPEKLEDLVAQDDIVASITSLIDSGNLPHLLLYGPPGTGKTSTIVAAAKRMYGSTKAYNSMTLELNASDARGIDVVRNEIKEFAGTQQLFLKGIKLIILDEADAMTSDAQFALRRIMEKYSKNCRFCLICNYVSKIIPALQSRCTRFRFSPLASNQIQGRLEHVAMNEHCPTTPDGIQAILRLSGGDMRRVLNLLQATAMSHHDRPVDETAVYLTSGAPLPNDIDRILEWLMNHDFAAAFRDIHYLCTTKGYALTDVLQDLTDKILCLDMDSVPLGLLLDGMSAVEHRLALGTDERIQLASLVGVFVQTR 328
The following BLAST results are available for this feature:
BLAST of NO17G02620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74720.11.100e-11061.19conserved unknown protein [Ectocarpus siliculosus][more]
OWZ14295.15.700e-10756.93Replication factor C subunit 5 [Phytophthora megak... [more]
GAX95668.14.800e-10657.96replication factor C subunit 5 [Pythium insidiosum... [more]
XP_002998971.11.100e-10556.93replication factor C subunit 5 [Phytophthora infes... [more]
XP_008911394.11.400e-10556.93hypothetical protein PPTG_16313 [Phytophthora para... [more]
XP_009034370.12.600e-10461.39hypothetical protein AURANDRAFT_71065 [Aureococcus... [more]
XP_024571525.16.500e-10356.21replication factor c subunit 5 [Plasmopara halsted... [more]
XP_008865978.11.400e-10056.76hypothetical protein, variant [Aphanomyces invadan... [more]
GAX28698.15.100e-10058.04replication factor C subunit 3/5 [Fistulifera sola... [more]
GAX23135.16.700e-10057.73replication factor C subunit 3/5 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02620.1NO17G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606420gene_9329Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100306g1gene6324Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02620.1NO17G02620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02620 ID=NO17G02620|Name=NO17G02620|organism=Nannochloropsis oceanica|type=gene|length=2912bp
AGGGCAGGGCAGACACTCACGCACTGACATCGAAGTACAGGCAAACGCAG
CGATGAGCACTAGCACTGTGATGGACACGGATTCGCCCGCTGGgtacgtg
cttcttcatttccaccctccccccctgtcccccccctttccccccccctt
tcctccctcccattcattattccctcacgcgactctgtcccccttcttcc
ccgactacccacagCAAGGGTAAGAAAAAAGCTTCCGTCCCTGCCATACA
ACCTGCCGCCACGCCGGATCAGCTCTTTAATGGAATGCCTTGGGTGGAGA
AATACCGGCCATCAGGGCTCAAGGACTTAGTGGCCCACGAGGAGATTATT
TCAATTCgtacgtagagttacaatatagtggcccctcgcttgcttgtgtt
gtgtgtgtgatcggatgggaatgggatggaatggggaggtgctatgaatg
gtgagctgggtgcggtgaatggaggagggcgtggggtagaaggggggctc
tgggatagagacattgattggagaggggggggggggcaggtagagcggtg
ttaccttctctttgtatgcaccccatcgttgaatgcccgcccttcctcca
cacgacatctttcttttttttctcctttcctccctcctcccacagTAACG
CGCCTCATCGAACGGAATCAGTTGCCCCACCTCCTTTTTTATGGCCCGCC
CGGGACAGgtaggtagaccccccccctccccacaaccccccctctgatcc
tctccctcctcttgcccccccttcctccccccctccccataacctccctt
ctgattctcctcctcttgcccctccctcccttcccctcttcccgtcaccg
tgcctcctaacccgccccctcctcttgccccttccccttatcttcctctc
ctttccctccctctccctccctccctctctcccttttcccctccctccta
cagGAAAAACTTCCACCATCCTGGCCTGTGCCAAACAGATGTACGGCACT
ACCAATTACGGAGCCATGACGCTCGAGCTGAATGCTTCCGACGAGAGAGG
GATTGATGTGGTGCGGCAGCAGATCAAGGAGTTCGCCGGCACCAAGCGTC
TCTTCAGgttcctccctccctccctccctccctccctccctccctccctc
ccttgatctgcttgttaaaatgcacgctgagctcctccccctccttctct
ccttcccccccctccctccctccctccctccccagCAACGGTGTCAAGCT
CGTGATCCTGGACGAGGCTGACCATCTGACCAACGACGCTCAATTTGCCC
TCCGTCGGGTCATTGAAAAATACACCAAGAACACACGgtacgtcctccct
ccctccctccctccctcgcttcctccctccctccctccctccctcccttt
ctgcctgtggggacactctcatcggaacctttgcctcttgctccctccct
ccctccctccctccctccctccctcccgcagCTTCTGCCTCATCTGTAAC
TACGTGAGCAAAATCATCCCTGCCCTCCAATCCCGATGTACTCGCTTCCG
GTTCGCGCCCCTGGCCCCTCTGCAGGTGGAGGGGAGGATCGCGCATGTGG
CAGAGAGGGAGGGGCTGACCTTAGATACGAAGGCGGTTCAGGCGTTGGTC
CGGCTTGGCCACGGAGACATGCGGCGGGTGTTGAACGTCATGCAGgtaac
tttttccctccctccctccctccctccctctctccctccctccctccctc
cctccctccctccctccctcccttccatttctgcgcgcttgtccggggga
gctgccatcatgacctctaaccctttctccctccctccctccctccctcc
ctccccccctccctcccctcagGCGACAGCCATGGCTTATCAAAAGAGCA
TCGACGAAGAAGCGATCTATCTCTCCTCCGGGAACCCCCTCCCTACAGAC
GTGGATGCGATGATCCACGCCCTCCTACACGACACCTTCAAGgtaccgcc
ctccctccctccctccctccctccctccatcccttcctccctccatccct
tcctccctccctcccgccctccctccctccctccctcccgccctgcctcc
atttccacatgtcgttgcacccttcgaaccgctcaccccacccttcctcc
ctcccttcctctctccctcccagGACGCATTCAATTCCATATGGAAGACG
AGTGTACTCAAGGGCTACTCCCTCTCTGACGTCCTCAATGACGTCATGAC
CGTTGTCTCGGCCGTTGATTTCCCCAACGAGgtaccgccttccctccctt
ccttcctccctccctccctccctcccttgtttccttccttccttccttct
tctcgtctccctgcattctccttctccccctccctcccttcctcccttcc
tccctctctccctcaggtgcatagacacatctactccccctccctccctc
cctccctccctccctccctccctcagGTCCTTGGGCATATCTACTCTTCT
CTCGCAGACATTGAGTATCACCTGGCGTCAGGCGCAAACGAGAGGCTTCA
GCTCGGCGGTGTGGTGGGTGCCTTTGCCTACGCACGGGCCATGATGGTTG
AGTAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGACGATGATGGA
TGATGGAGGTGGTGGGTGCCTTTGCGTACAGGAGCCTTTGCGTATGCAAA
GGCGATGATTATGGAGTAGAAAGGGAGAGTAAGGGGGAGGGTTCATCGAC
GGGAAATGAAAGTGAGGGCGCAGAAGGAAGAACAAGGGCACAACGAGCAG
GATGCAGCCGAGGCGAAAAAGATAAAGAAAAAAAGCAACCGAAGAGGGTA
AAGAAGAAGACGACGACATGAAAGGGAAGCTTTGGCCATAAGCCAAGAAA
GTATCAGGTCGA
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protein sequence of NO17G02620.1

>NO17G02620.1-protein ID=NO17G02620.1-protein|Name=NO17G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSTSTVMDTDSPAGKGKKKASVPAIQPAATPDQLFNGMPWVEKYRPSGLK
DLVAHEEIISILTRLIERNQLPHLLFYGPPGTGKTSTILACAKQMYGTTN
YGAMTLELNASDERGIDVVRQQIKEFAGTKRLFSNGVKLVILDEADHLTN
DAQFALRRVIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFAPLAPLQV
EGRIAHVAEREGLTLDTKAVQALVRLGHGDMRRVLNVMQATAMAYQKSID
EEAIYLSSGNPLPTDVDAMIHALLHDTFKDAFNSIWKTSVLKGYSLSDVL
NDVMTVVSAVDFPNEVLGHIYSSLADIEYHLASGANERLQLGGVVGAFAY
ARAMMVE*
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Synonyms
Publications