NO17G02610, NO17G02610 (gene) Nannochloropsis oceanica

Overview
NameNO17G02610
Unique NameNO17G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2256
Alignment locationchr17:766014..768269 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:766014..768269 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO17G02610 vs. NCBI_GenBank
Match: XP_005855258.1 (hypothetical protein NGA_0078700 [Nannochloropsis gaditana CCMP526] >EKU21102.1 hypothetical protein NGA_0078700 [Nannochloropsis gaditana CCMP526] >EWM24143.1 hypothetical protein Naga_100306g2 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 2.200e-21
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 0 
Query:    5 AAAFTAFSTRGVSSFTVCILVLLTIXXXXXXLLRLCFGTISIPAIWARYEKKAKLEDAYARAYRRREDTLYHRDWAKSRGAFAEAKRMEQELEGVEAELDVLDDKLSQYSSIDGEKQ 122
            A+ F A  +   SS T+C L+LLTI      +LR+CFGT S+  + A +E++  LE AYA AY+RRED++YHRDWAKSRGAF+EAKR++ E+E  E+ELD LDD L     I  ++Q
Sbjct:    2 ASHFLATVSHSESSLTLCALLLLTIICATLFVLRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDDTLGNPQGILTKRQ 118
The following BLAST results are available for this feature:
BLAST of NO17G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855258.12.200e-2151.28hypothetical protein NGA_0078700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02610.1NO17G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100306g2gene6325Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02610.1NO17G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02610 ID=NO17G02610|Name=NO17G02610|organism=Nannochloropsis oceanica|type=gene|length=2256bp
ACGGGGGGGTTGGCGGGTCTTGCGGGGTGGGAGTGTCGTTGTCGGGAGGG
GAGGAGTGGAGGAGGGTGCAGGGCCGTCGCGGTACCGTAGTGCGACTAAC
GAGGAGGAAGGCGGGTGTGTGGGGGGGGAGGACCAGGAGGAAGAGGAGGA
GGAGGAGGAGGGAGAAAGGAGTGTAGCGGGGCATCTCCTCGTATCGTATG
GATGCTGGAAAGATTGCTTGATTGAAGCGGGCTTGGCGGGGTGGTGCTGC
GATGTGCAAGGCTTCACCCGTGCGTAGCTAGCTTGACACTCTGTCTTTGT
GGGATACATGTGTGAGAGTGTCTAGCCATCGTGGACAAGGAAAAGGGGTG
GAAAAGAGGTAGCGTTCTATCACTTGCTTGGTCACTCGAGGCCGTAGATA
ACGCCCCATCGCCAGTGTCCGTGTTCGGTGAGAGCCTGAAGTGTGTTCCA
TTCAAACAAGCCCAACCACACCATCACAAGACAGGGATAACATTCAAAAG
GAATAGGAAGGTATCCGCTGCTTCGCTCAAGCGCCGGTGGCAGAAGCAAC
TAGCTGGCGTCCTTTCTCCATTGCTTTCTCACCATGCATGCCCCAGCAGC
AGCATTCACCGCCTTCTCGACCAGAGGCGTCTCCTCCTTCACGgtacgcc
atcaccatcccctatcccaccctctcgatccggtattgtctccctcgtct
attttcccatttgcaaccataccccgtattccaactcccgcgacctcctc
gacgtgcttcttcaaaccttcccatccttccccttctccctttcctccca
tccctcaatgcttctccagGTCTGCATCCTCGTTCTCCTCACCATAACCT
TATTCATCCTTCTTCTCCTCCGCCTCTGCTTCGGCACCATTTCTATTCCC
GCCATCTGGGCTCGATACGAGAAAAAAGCCAAGTTGGAGGATGCCTATGC
ACGCGCGTACCGCCGGAGGGAAGACACTTTATATCATCGGGATTGGGCTA
AGgtgaggagaagggagtgagggtcagggatggacacattcagttgtttt
gtatgacaatgggatgaccggttgtcaggataactgtaatgaagtgatga
accgagggagggaaagagggagtgagtgagtgagtgagggagggagtgtg
tgagagcgtttggagtccgggcacccccacttagtacctctattcttcat
tcgcattttacacacccgtcatacgtcatttattacacatacttatacag
TCACGCGGTGCATTTGCAGAGGCCAAGCGCATGGAGCAGGAGTTGGAAGG
AGTTGAGGCGgtgcgtgcattggctctatgtgatgggatgagagggaggg
aaggatggggggcgagaggatgtatgaatccacttcatagtcctgcttta
tgtgtgtgttgagtgtagtatggtccttgttcggcggaagtacgcttctg
tgtgtgcgttttttaaactcgtcctgcttcccttcctctcccctttgtca
aacagGAGCTGGACGTTTTGGACGACAAGCTGAGTCAATACTCCAGTATT
GATGGCGAGAAACAGGAAGGGGAAAAGCAGATTTAGAGGGAGCATGGGTT
TTCGATGCTGAACTGCAAGAAGGAGAGGGTAGAAAGAGGACAGGACAGTA
CTATTTCAGTACTATTTATTAGAGGGAGGACGGTGTATAGGCAGCGCAGG
CAGACAAAAATGAAGAGACTAGACCGAATAAAGTAATGAACCAAAAGAAA
ATGACCTCACATCTGTGTTCTCCTACCTTTGCGGGGAATTAACGAATGAA
TGAATGAATGAATAAATAAAATGGAGTAGGTTGGCCCGGTGGGTTTTGCT
GTCACCCTGGCCGGCCCCTGTCTTTCTTCTCCAGGATCGGAACAGGCCAT
GCCGGCATTGAGACAAAACGACATTAAATTCTTCTCTTAGCGAGTCTGCG
TGCTGCATCCCTTTGCATGCATGCTCGGAATGGGTGCCTGTGCGTTGACG
GAGGCTCGACACGGACGAAAAGCCCTGTGGAAAGTTTCAGCGATGCTGCT
TCTTCGGAACTTGAAAGCCCCCCCCCTCCCACTCCTACCCCACGTACAAC
AAGAACAGACTTACAACTCCAATCCCTTTCTTCCTCGCCATCCTGCAGCA
CGTTCAAAAAATAATGCCGTAGTCGAGGGTTCTCCTAATCTACTTCAGTG
CCGCTTGTGCATCCACTCTTTGTCCCATCAGGGCTCGCCATATTCTTCGC
CCCCCC
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protein sequence of NO17G02610.1

>NO17G02610.1-protein ID=NO17G02610.1-protein|Name=NO17G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MHAPAAAFTAFSTRGVSSFTVCILVLLTITLFILLLLRLCFGTISIPAIW
ARYEKKAKLEDAYARAYRRREDTLYHRDWAKSRGAFAEAKRMEQELEGVE
AELDVLDDKLSQYSSIDGEKQEGEKQI*
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Synonyms
Publications