NO17G02580, NO17G02580 (gene) Nannochloropsis oceanica

Overview
NameNO17G02580
Unique NameNO17G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2577
Alignment locationchr17:758273..760849 +

Link to JBrowse

Properties
Property NameValue
DescriptionSTART-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:758273..760849 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G02580 vs. NCBI_GenBank
Match: EWM24139.1 (START-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 214.9 bits (546), Expect = 5.100e-52
Identity = 123/230 (53.48%), Postives = 139/230 (60.43%), Query Frame = 0 
Query:  239 PSQPGKGVPLMIAEGLFKNRTADALWEAMRVGSTHKTMPRLDPFYESYTPLHVYNHQIEIGRRTTKRLLVYGKRDFIFASFEEKEAAA------------AATGK-KAKGSQKRQXXXXXXXXXXQLHVTASISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGFYFPCPEDAFATRATIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEDITKATGKR 456
            P+ PG+G+PLMIAEGL+ N T  ALWEAMRV +T  TMP LDPF+ESYT L VY  Q EIGRR+TKRLLVYGKRDF+ ASFEE  +AA            A  GK +       +          +  VTASISL       +           PP  L E  GY RA QDLVG+Y    E   A  A IIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLE +  A  +R
Sbjct:   42 PANPGEGIPLMIAEGLYLNTTPQALWEAMRVRNTLTTMPLLDPFFESYTQLKVYGPQTEIGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDL-----------PPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEAVAGAPRRR 260
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BLAST of NO17G02580 vs. NCBI_GenBank
Match: XP_005855257.1 (hypothetical protein NGA_0078600, partial [Nannochloropsis gaditana CCMP526] >EKU21101.1 hypothetical protein NGA_0078600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.5 bits (184), Expect = 4.800e-10
Identity = 56/139 (40.29%), Postives = 65/139 (46.76%), Query Frame = 0 
Query:  298 IGRRTTKRLLVYGKRDFIFASFEEKEAAA------------AATGK-KAKGSQKRQXXXXXXXXXXQLHVTASISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGFYFPCPEDAFATRATIIMRTDLKG 424
            IGRR+TKRLLVYGKRDF+ ASFEE  +AA            A  GK +       +          +  VTASISL       +           PP  L E  GY RA QDLVG+Y    E   A  A IIMRT  +G
Sbjct:    1 IGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDL-----------PPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTGRRG 128
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BLAST of NO17G02580 vs. NCBI_GenBank
Match: GAX23401.1 (hypothetical protein FisN_15Lh121 [Fistulifera solaris])

HSP 1 Score: 74.7 bits (182), Expect = 8.200e-10
Identity = 66/258 (25.58%), Postives = 111/258 (43.02%), Query Frame = 0 
Query:  192 LWQRYREVRHEFEGYLQEREALERPQGWAVLTTSRDNRLKVSIRWPEPSQPGKGVPLMIAEGLFKNRTADALWEAMRVGSTHKTMPRLDPFYESYTPLHVYNH---QIEIGRRTTKRLLVYGKRDFIFASFEEKEAAAAATGKKAKGSQKRQXXXXXXXXXXQLHVTASISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGFYFPCPEDAFATRATIIMRTDLK--------GNIPHWVFSKSVGTTG 439
            L+Q YR+++ E+     +++AL     W +L       + +     +P+      P +  +G+F     +  W  + + +   +MP++DPFYE  +    Y H   ++ + R+ TKRLL +GKRD +F S +++  +                            V+ ++S+            T L P  P        GYTRA QD + FY P  E+   T  TI+ R DL         G IP W++ K++G TG
Sbjct:   51 LYQAYRDLQSEY-----QKKALR--GDWKLLHEKEGVEVCLLQHPEDPT-----CPYVRMKGIFP-VPVEECWNFLSISNWDTSMPQMDPFYEGVSLHGAYQHDQVRMILCRKRTKRLLAFGKRDLVFLSVQDEPLSDGT------------------------WVSGTVSV-----------ETDLVPRQP--------GYTRAFQDSIAFYKPLQENTH-TELTIMCRIDLNDSAEDGTGGFIPMWLYVKTIGKTG 251
[Close]
BLAST of NO17G02580 vs. NCBI_GenBank
Match: GAX22983.1 (hypothetical protein FisN_15Hh121 [Fistulifera solaris])

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-9
Identity = 65/258 (25.19%), Postives = 109/258 (42.25%), Query Frame = 0 
Query:  192 LWQRYREVRHEFEGYLQEREALERPQGWAVLTTSRDNRLKVSIRWPEPSQPGKGVPLMIAEGLFKNRTADALWEAMRVGSTHKTMPRLDPFYESYTPLHVYNH---QIEIGRRTTKRLLVYGKRDFIFASFEEKEAAAAATGKKAKGSQKRQXXXXXXXXXXQLHVTASISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGFYFPCPEDAFATRATIIMRTDLK--------GNIPHWVFSKSVGTTG 439
            L+Q YRE++ E++    + +       W +L       + +     +P+      P +  +G+F     +  W  + + +   +MP++DPFYE  +    Y H   ++ + R+ TKRLL +GKRD +F S +++  +                            V+ ++S+            T L P  P        GYTRA QD + FY P  E+   T  TI+ R DL         G IP W++ K++G TG
Sbjct:   47 LYQAYRELQSEYQTKAAKGD-------WKLLYEKEGVEVCLLQHPEDPT-----CPYVRMKGIFP-VPVEECWNFLSLSNWDTSMPKMDPFYEGVSLHGSYQHDQVRMILCRKRTKRLLAFGKRDLVFLSVQDEPLSDGT------------------------WVSGTLSVK-----------TDLVPRQP--------GYTRAFQDSIAFYKPLQENT-QTELTIMCRIDLNDSAEDGTGGFIPMWLYVKTIGKTG 247
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BLAST of NO17G02580 vs. NCBI_GenBank
Match: XP_002182417.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46318.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 68.9 bits (167), Expect = 4.500e-8
Identity = 53/193 (27.46%), Postives = 77/193 (39.90%), Query Frame = 0 
Query:  259 TADALWEAMRVGSTHKTMPRLDPFYESYTP----LHVYNHQIEIGRRTTKRLLVYGKRDFIFASFEEKEAAAAATGKKAKGSQKRQXXXXXXXXXXQLHVTASISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGFYFPCPEDAFATRATIIMRTDLK--------GNIPHWVFSKSVGTTGM 440
            +  + W+ +RV    +TMP++DPFYE  +     +H   H I + R+  +R+ +YGKRD +F S  +                                V         GT  +    T   P  P        GYTR  QD + FY P   D+  T  TI+ R DL         G IP W + K++G TG+
Sbjct:  137 SVQSCWDFLRVSEWDRTMPKMDPFYEGVSVHGEWVHRKTHMI-LCRKRMRRIGIYGKRDLVFLSVTD--------------------------------VPLRDGTLTSGTVSV---RTNKVPRVP--------GYTRCFQDSIAFYKPVNNDS-QTDLTIVCRIDLNDSAEDGMGGLIPMWFYVKTIGITGV 284
The following BLAST results are available for this feature:
BLAST of NO17G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24139.15.100e-5253.48START-like domain protein [Nannochloropsis gaditan... [more]
XP_005855257.14.800e-1040.29hypothetical protein NGA_0078600, partial [Nannoch... [more]
GAX23401.18.200e-1025.58hypothetical protein FisN_15Lh121 [Fistulifera sol... [more]
GAX22983.11.800e-925.19hypothetical protein FisN_15Hh121 [Fistulifera sol... [more]
XP_002182417.14.500e-827.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008422NSK008422Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02580.1NO17G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02580.2NO17G02580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606406gene_9325Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100306g6gene6329Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02580.1NO17G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02580.2NO17G02580.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02580 ID=NO17G02580|Name=NO17G02580|organism=Nannochloropsis oceanica|type=gene|length=2577bp
CAGGACAGGCGCCAACATGGTGCCGCATATGCCCACATCCCCACGACAAA
GCTTGCCATTACTAACAGCCTACATCGACAGCGTGTTTGTCGGCCCGGAG
GAGCCTGGTATCATTGACACGCTTACCCACGACCCTTTGATGCCGCCAAG
GGCCAGAGCAGAGGTGGATGGGGATGATGAAAGAAGAGAAGAGGGAGATG
AAAGAGAAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGAGGA
GGAGGATGGGTGACTGGTTTGTGGCGACGCCGTTTCCACCGTCGGGAAGG
AGCGGGGGACGAGGGTGGAGGCCGATGGGAGGGAGGAGGAAGAAGGAGTG
GGATGGAGGGTGGAAGCATGTGGTCTCAGTTGGGAGGATGCTTGGCCTTA
GCAGTTGTGGTTTTGGCAATAGAAGCAGTCGTTTTGGGAAGACTGGCCGA
CTATAGAAAACCCTCGTCCTGGGGAGGAGATGGGGGAAGGACGGAGGAAG
GGATTATTGCCGCTGGAGGAGAAGGAGGAGGAGGAGGAGTGATCGGTTCA
ATGAAGCGTTGGGTGCAAGACCATCAAGAGACCCAGATATTGTGGCAGCG
ATACCGCGAGgtaaagaccagagggaagggagggagggaggggagggagg
gaaggttagggttaaccctaaccatacatgcaccattcctatgtctccgt
gtcttctttcttatcatcatgcaaacatcaccgtcgctgccatcctttcc
ctcctctcctccctctcatgtttctcctcctcctttcctcccctcccatt
tactcgctcacgcacgcttacggcactcatgtgatatatcgatatttcca
agGTACGGCACGAATTCGAGGGCTACCTCCAAGAGCGGGAGGCGTTAGAA
CGACCCCAGGGATGGGCCGTACTCACCACAAGgtaaaggagggagggagg
gagggagcgagggagcgagggaagggaatgttgtgtcatttttcatctcc
acaggaagaagagggagggtgctgtgatgccccccctcgtccctctttat
tacttcgctccccgagcctttccctgccgtccttactcttgtcgtcattc
ccttctctccccttcccttgctttccgtttccttgcctcgtgtgaggggg
gatcgtgcgaggagcttttgagagctctcagacctccacgcaacgaaatg
ctctgtcactgaccccctccttccctccttccctccctccctgcctcctt
ccctccctccctccctgcctctctcccgtcctccctagTCGTGACAACCG
TTTGAAGGTCTCTATCCGTTGGCCCGAGCCGTCGCAGCCCGGGAAAGGCG
TTCCGTTGATGATAGCCGAGGGGCTCTTCAAGAACAGAACAGCTGATGCC
TTGTGGGAAGCGATGAGGGTGGGGAGgtaggtgcggagggagggagggag
ggagggagggagggagggagggatgggctaggccacgcacctggtcgatc
cgtggcttaccttttccccgccctccttccctccctcctgccctccctcc
ctccctccctccctccctccctcccacagTACCCACAAGACCATGCCGCG
GCTCGATCCCTTCTATGAGTCTTACACTCCCCTGCACGTCTACAACCACC
AAATCGAGGTGAAAGGCCTTCCTCTCCCTCCTTCCCTCCTTCCCTCGCAC
TCTATCATGATCCTAAATTTGTCCCATCCCCTCCCTCCATCCCTCCCTCC
CTCCCTCCCTTTCTCCCTCTCTCCCTTTCTCCCCCAGATCGGACGCCGCA
CCACCAAACGCTTGCTCGTCTACGGGAAACGAGACTTCATTTTTGCGTCC
TTCGAAGAAAAAGAAGCAGCAGCAGCAGCTACCGGCAAGAAGGCAAAGGG
CAGCCAGAAGAGGCAGGGAGGAAGGGAGGGAGGAAGGGAAGGCGAACAAC
TCCACGTCACAGCCAGCATCTCCCTCTCCCTCGAAGGGACACAACAAATC
GGTGGCCGTCACACCTTCCTCCCTCCCTCTTTCCCCCCCTCCGGCCTGGG
GGAAAGAGAGGGTTATACCCGCGCGCACCAGGACCTTGTCGGTTTCTATT
TCCCCTGTCCGGAGGATGCGTTTGCCACACGCGCGACTATAATCATGCGA
ACCGgtagggagaaagggatggagggagggagggagggaggaatctgtgg
tgtgtttgttacttgaggagctttcgatctgtctgacacatacacacata
cacacatacacacatacacacaccggacttacacagATTTGAAAGGCAAT
ATCCCGCATTGGGTGTTTAGTAAAAGCGTGGGCACCACTGGCATGCATTT
TTTGCAGACGCTCGAGGACATCACCAAGGCGACCGGGAAGAGAAAGTGAT
GAGAGGGACCTAGATTGAAGGGATGGTGTGTAGGAAGACAGGGAAGGGCA
AGTGATAGAGGAAGATCGGAGGGAGGGACAAAGAAAACGTGTGTATATTG
CTAGCTAGAAAGAGAAGGGGTGCGTAGTTAGAAATGAGAACAAGGACAGC
AAAAGAAAGGAAAGTGGAAAAATGACA
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protein sequence of NO17G02580.1

>NO17G02580.1-protein ID=NO17G02580.1-protein|Name=NO17G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MVPHMPTSPRQSLPLLTAYIDSVFVGPEEPGIIDTLTHDPLMPPRARAEV
DGDDERREEGDERERGRGGGGGGGGDGGGGWVTGLWRRRFHRREGAGDEG
GGRWEGGGRRSGMEGGSMWSQLGGCLALAVVVLAIEAVVLGRLADYRKPS
SWGGDGGRTEEGIIAAGGEGGGGGVIGSMKRWVQDHQETQILWQRYREVR
HEFEGYLQEREALERPQGWAVLTTSRDNRLKVSIRWPEPSQPGKGVPLMI
AEGLFKNRTADALWEAMRVGSTHKTMPRLDPFYESYTPLHVYNHQIEIGR
RTTKRLLVYGKRDFIFASFEEKEAAAAATGKKAKGSQKRQGGREGGREGE
QLHVTASISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGF
YFPCPEDAFATRATIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEDITK
ATGKRK*
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protein sequence of NO17G02580.2

>NO17G02580.2-protein ID=NO17G02580.2-protein|Name=NO17G02580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MVPHMPTSPRQSLPLLTAYIDSVFVGPEEPGIIDTLTHDPLMPPRARAEV
DGDDERREEGDERERGRGGGGGGGGDGGGGWVTGLWRRRFHRREGAGDEG
GGRWEGGGRRSGMEGGSMWSQLGGCLALAVVVLAIEAVVLGRLADYRKPS
SWGGDGGRTEEGIIAAGGEGGGGGVIGSMKRWVQDHQETQILWQRYREVR
HEFEGYLQEREALERPQGWAVLTTSRDNRLKVSIRWPEPSQPGKGVPLMI
AEGLFKNRTADALWEAMRVGSTHKTMPRLDPFYESYTPLHVYNHQIEVKG
LPLPPSLLPSHSIMILNLSHPLPPSLPPSLPFSLSPFLPQIGRRTTKRLL
VYGKRDFIFASFEEKEAAAAATGKKAKGSQKRQGGREGGREGEQLHVTAS
ISLSLEGTQQIGGRHTFLPPSFPPSGLGEREGYTRAHQDLVGFYFPCPED
AFATRATIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEDITKATGKRK*
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Synonyms
Publications