NO17G02530, NO17G02530 (gene) Nannochloropsis oceanica

Overview
NameNO17G02530
Unique NameNO17G02530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4006
Alignment locationchr17:744202..748207 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:744202..748207 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008430NSK008430Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02530.1NO17G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|270580gene_9322Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02530.1NO17G02530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02530 ID=NO17G02530|Name=NO17G02530|organism=Nannochloropsis oceanica|type=gene|length=4006bp
CAGCAACAGGCAGAACAGCAATGACAACATCCACGACCCCAAAGTCCTGC
CTCATCTGCGAAGAGCCAGCACTATTACGgtatgtgccccggcatgttcc
tttgacgctttctccttcccaccctccgagattcccccttgccttaaccc
ccccccccccttcctccgtttattgtcccacacagCTGCGCTGCATGTCA
GCGCGCAACGTACTGCTCCAAGACCTGTCAGGCTGCACACTGGAAGTTGG
GGCACAAGCAGCAATGTCAGGTATTACGCCAGGCCCGTGAGAAGgtaaag
ttggacagtttccctcaccccctctccgtctcccattaccggcccccact
gacctatgacctacttccctccttcccttccctcccttcctccatgcctc
accgcctactttccattcttcctttatctctgtttcttatccctccagGG
CGCAAGCATGAGTGAAAAAGATGCCAAAGAAGCTTTGCGTGAGCTAGAAG
ACGAGGTCCGCAAGATGGACATGAAGGCGGCGTACAGGGAGgtgagggag
ggcgggagggcgggagggcgggagggtgagagggaaagagggaaaatgtg
aatgggtgaatggaggctaataatgggaggcaaggaaggaaatagggcgg
gaggaacttaactgtattccccaagggtcactttctcctccctcctcttc
actcttcccttcactagATGCGTCACGCCCAGGCCGAGCTGGCGCGTTAC
CAAGCAGGGACGAAAGCGACGACTAAAGCACTTGATgtacgtaccctctt
cctctctccctccctccctccctccctccccctcaccgtccccccctttt
cccccctctccccctttcctccctccctcaccctcaccctcacctcaccc
tcaccctcacctcaccctccttccctccttccctccatccctcactccct
cagGCGACTGTCCGCGAAACACCTGAGGGGGCGAAGGAAAGAGCCAGCAC
AGTGTCTCAGCTGATGGGTGTGGTCCCAATCTCTCCCGTGGAGGAGGGCG
AGGAGGGAAAGAGGGAGGGAGGGGATGGTGGTGGGAGGAGGGAGCACCAT
GATGATGGTGGTCACCAGCATCATCACCATCGTCATCACCCAGAGCAGCA
GCATCAACATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
ATCAGCAGTATCAGGGTCCTTGCGAAGAGGAGGAGGGGGAGATGAGAAGG
GTAGAGGCGTTGAAGCAAGTGAATGATCTTGGCCCTCCTCCTTCTCTTCC
TCCTTTTCCTCCTCCTTCGCTCCCTTCGATACTCCCTTGTCCTCTTGATG
CGGAGGTGAGGCGGCAGCGGCAGCGGCAGCGACAGCAGCAACAACAACAG
CGACAGCAGCAGCAACAACAACAACAACTACTACAAGACGGCGACAAGGA
GGAGGGGCTTGAAGAGGAGGAGGTCGAAGGAGAGGAAGAGATGGACCGCG
ACTACTGTACACCACGAGTTATCGTCGAGCTACAGgtctcttcctccctc
cctccctccctccctccctccctccctccctttctccctctcttacctcc
tcgccagccatgtgaccaaccctccctctctccctcccgccatttcttcc
ttcctccctccctccctccctccctccctccctccctccagCCCATGATT
CAAAAATGGTCCATCCTCGCCTGGCCTCCCTCCTTCCCTTGCTCCTCCTC
CCCCTCCCCCTCCCCCTCCTCTTCCATCGCCATCACGCATGCATCTGCCT
CCCTCCTCTTCTTTTCTGACCCACCTCCAGAGAGAGACGAGGGGGTACAA
AAAGACGAACAAGGACAAAAACAACAAGGACAGCAGCAGCAGCAGCATCA
CGTCCAACTGCACTTGCGTTTCGCCATCCTCGAAGGAGGGGGAGAGGGAG
GGAAGGAAGGAGGGCGAGTAAGGTGGTATCGAGCCAAGATCCCTTTTCCC
TCCTCCTCCCCCCCCCCCTCCTCCTCCCCCTCTTCAACGGGAAGAAGAAG
CAGCAGGGCTTCCTGTCGCCAGCGTCGGCTACCGATCACAATCGCGgtat
gctccctcccttcttccctccctccctccctccctccctttccatctctc
atctctccatgacctccctcattttctttccactggttcgaccaatccac
tccttccatccgtccttccctctctcttctcctcccgtccttctaatccc
tcaagACCGACCATCTCTCCATCAAGCTACCCCTCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCTATGCCGGGTGCCGCTGCGGCCGATTGCGTGGGTTC
TCTCATCGACTCCATCCCCACCTCTCTGGCTGCAGGTCTAGAAAAGCTGG
TAGCGACACATGgtcaggcgggagggagggagggagggagggagggaggg
agggagggagggagggagggagggagggagggagggagggagggagggag
ggagggagggagggagacatgagatttttagaacgaatgcttgcggttat
cttgcattcattgatctatttatatttagtcatctatccgttcatgtacg
catgcgtgccctctctctccttctccctccccctctccttccttcttctt
attcagGCCCTCTCCACCTCGCCTGCCGGTACTGCCACGCCCTCGTCCTC
CGTCGGCCGCTGCCCCGCTTCCTCGCCCTCCCCTCCGAAATACTCGATGA
CGTATCCGACTACATGCTTTGTTTCCGgtacctccatcttcctctccctc
gctcgctcgctcgctcgctcgctccctccctccctcctccccttcatctt
tttttgccttccaacgacccaactcacctctccctccctccctccctccc
tccctccctccctccctccctccctccctccttctcccccagTGACTCCG
TCCTTCCCCTTTCATCCGACCAGCTCCATGCCCTTCCTTCCCTCGGCCTC
TGTGGAGAGGGATTCTTCCTCCTTCCCAAGGCGGCGCTGAGGGAAAGCGG
GAAGGAGGGAGGGAGGCGCGAAGCTGCCACGGAGATGGAGGAGGAGGGGG
AGGAAGGGAAGGAGGAGGGGGAGGAAGGGAAGGAGGGAAGGGTGGTGTGT
GGGAAGTGTGAGGCAGCAATGGGCATGGCCGTACGGACGGAGGAGgtatg
gaagggagggagagagggagggagggagggagggagggagggaagttttg
gcaaatactcgcactccttccacgctctctcacgtgctattctctgttct
gtaccctcccctccttctgtcccttgctccctccctccttcggtcccttg
ttccttccctccttcggccctttccagGGACGCCGTCATGGCGATGTCCA
CCTCTGGATGCATTCCCTCGGCCTTGCCGTCCCTTCCTCCACCGTGTCCT
CCCCCCTCCCTCCCTTTCTCCCTCCTACACCTACCTCCCCTATCTTGAAG
AGCATgtaagcgtggacacgcacatagccagtgtgttaagacgggcttca
caaagACTGAAGAAAAGGCGGTTCGTCTTACGTTGTGAGGAGGAGGAGGA
GGAGGAGGAGAGGGAAGGGGAGGAGGGAGGAGGAGAGGGAGAAGAGGGGG
GAGGCATGGAGGTCGTGGTGTGGGGGAGTGAGGTGTTGTTGCTTGAGCCC
ATGGACAAGAAACACACACAAGAAGAGGAGGGGGGGGAGGATGGAAGGGA
AAGAAGGGCAGCAACACCAGGCACTCCGGCGCTCAAAGTTTCCTTCCGCT
TCCTGCCTTTCTCCCTCTCCCCCTCTCCTTCTTTTTCTTCTTCTCCTCCT
TCTTCAGCCCTTGAGCTTACCCTTCCTGTGGAGGAATGGCATGCACTTGC
CGCCTTGTTAGAGGCATCGGCAGCGTCAGATTTTCCATCCTCCATGCACG
TGCCATTTGCCCCTGCCCGACTGGCATATTTGCCTTTGTGCGGAAGAGGG
TCGTAA
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protein sequence of NO17G02530.1

>NO17G02530.1-protein ID=NO17G02530.1-protein|Name=NO17G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp
MTTSTTPKSCLICEEPALLRCAACQRATYCSKTCQAAHWKLGHKQQCQVL
RQAREKGASMSEKDAKEALRELEDEVRKMDMKAAYREMRHAQAELARYQA
GTKATTKALDATVRETPEGAKERASTVSQLMGVVPISPVEEGEEGKREGG
DGGGRREHHDDGGHQHHHHRHHPEQQHQHHHQQQQQQQQQQQHQQYQGPC
EEEEGEMRRVEALKQVNDLGPPPSLPPFPPPSLPSILPCPLDAEVRRQRQ
RQRQQQQQQRQQQQQQQQLLQDGDKEEGLEEEEVEGEEEMDRDYCTPRVI
VELQPMIQKWSILAWPPSFPCSSSPSPSPSSSIAITHASASLLFFSDPPP
ERDEGVQKDEQGQKQQGQQQQQHHVQLHLRFAILEGGGEGGKEGGRVRWY
RAKIPFPSSSPPPSSSPSSTGRRSSRASCRQRRLPITIATDHLSIKLPLS
SSSSSSSSSMPGAAAADCVGSLIDSIPTSLAAGLEKLVATHGPLHLACRY
CHALVLRRPLPRFLALPSEILDDVSDYMLCFRDSVLPLSSDQLHALPSLG
LCGEGFFLLPKAALRESGKEGGRREAATEMEEEGEEGKEEGEEGKEGRVV
CGKCEAAMGMAVRTEEGRRHGDVHLWMHSLGLAVPSSTVSSPLPPFLPPT
PTSPILKSILKKRRFVLRCEEEEEEEEREGEEGGGEGEEGGGMEVVVWGS
EVLLLEPMDKKHTQEEEGGEDGRERRAATPGTPALKVSFRFLPFSLSPSP
SFSSSPPSSALELTLPVEEWHALAALLEASAASDFPSSMHVPFAPARLAY
LPLCGRGS*
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Synonyms
Publications