NO17G02500, NO17G02500 (gene) Nannochloropsis oceanica

Overview
NameNO17G02500
Unique NameNO17G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1166
Alignment locationchr17:737275..738440 -

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial fission 1 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:737275..738440 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0000266mitochondrial fission
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR016543Fis1
IPR028061Fis1_TPR_C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO17G02500 vs. NCBI_GenBank
Match: EWM24132.1 (mitochondrial fission 1 protein [Nannochloropsis gaditana])

HSP 1 Score: 242.7 bits (618), Expect = 8.100e-61
Identity = 131/162 (80.86%), Postives = 141/162 (87.04%), Query Frame = 0 
Query:    1 MTVKEDREHFALKLQAEAKASLEQIPEKEAAWEAERKNGNPDLNAKFIYAYVLCMSASDRHKKLGIRLMNELITARFNVEECLYATAVCLYSQGEWQGARDKVDRLLRLNPDHRYGNELHLYVKDAQAKQDLXXXXXXXXXXLGATAAILLGAFLGGGRRGR 163
            MTVKEDR+ F  KLQ EAKAS EQIP+KEAAWEAERK   PDLN KFIYAYVL MS S+RHK +G+RL+NELI ARFNVEECLYA AVCLYSQ EW+  R+ VDRLLRLNPDHRYGNELHL+VKDAQAKQDL XXXXXXXXX+GATAAILLGA LG GRRGR
Sbjct:    1 MTVKEDRDIFEQKLQVEAKASKEQIPDKEAAWEAERKKAKPDLNVKFIYAYVLTMSNSERHKSMGMRLLNELIAARFNVEECLYALAVCLYSQTEWRECREVVDRLLRLNPDHRYGNELHLFVKDAQAKQDLAXXXXXXXXXIGATAAILLGAMLGSGRRGR 162
The following BLAST results are available for this feature:
BLAST of NO17G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24132.18.100e-6180.86mitochondrial fission 1 protein [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008433NSK008433Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02500.1NO17G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606370gene_9319Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100810g1gene6336Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02500.1NO17G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02500 ID=NO17G02500|Name=NO17G02500|organism=Nannochloropsis oceanica|type=gene|length=1166bp
ATGACGGTAAAAGAGGATCGAGAACACTTTGCATTGAAGCTGCAGGCGGA
GGCCAAGGCAAGCTTGGAGCAAATCCCGgtaaggaggcaggacgggtgag
gcggaggaggaacatggagggggaagatagggcgaagaagagaatagaac
atgaatgcgtggattaagacggctacagaagtcgtttgcatagacagcat
atgtgggtggggaggaagagcaatgcaatccgcggtggtgcttggttacc
tctctcccatgtgcccacagtctccttcatccctccctgacgccctttct
tgtctcttttcctcgttacaacagGAAAAAGAAGCCGCTTGGGAAGCAGA
GCGAAAGAATGGCAATCCCGATTTGAACGCGAAATTTATTTATGCCTACG
TCTTGTGCATGTCGGCCTCGGATCGACACAAGAAACTCGGAATCCGGCTT
ATGAATGgtgagtgtggaggaagggatgaaggggggtaggaggtgcgtga
aaggagcaggattgagcttgaatgtaaaatattttttccagtggtggtta
ttgacgaattgggaagggagagcacgacttatgttttctctcaccctaga
tatatccctcccatcctttctccctccctacccttcagAGCTCATCACGG
CGCGTTTCAACGTCGAGGAGTGCTTGTATGCGACAGCCGTATGCCTTTAC
AGCCAAGGAGAATGGCAGGGAGCCAGGGACAAGGTAGACCGATTGCTGCG
GTTGAACCCTGACCATCGCTACGGGAATGAGCTGCACCTCTATGTCAAAG
ATGCTCAAGgtatggaggggaggaaaggtgggcgaggtgggcgggcagga
gagaaagaagggaaggaaggaacgacagggaggaagcatgtgggagaaca
gattttgtttacaatcgacatcaactgcatatgacatcaactgcatatcc
ataaacgccccgccatggacctcgctcatccaatccttaactttttagat
ttatttaaattcgaatcttcaatcttacgcgcatgttactttttctgaca
accgtacagCTAAGCAGGATCTTGCCGTCGGGGTAGGAGTAGGAGTCGGC
GTCTTGGGCGCAACGGCCGCGATCCTTTTGGGAGCTTTTTTGGGGGGTGG
CCGGCGAGGGCGTTAG
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protein sequence of NO17G02500.1

>NO17G02500.1-protein ID=NO17G02500.1-protein|Name=NO17G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MTVKEDREHFALKLQAEAKASLEQIPEKEAAWEAERKNGNPDLNAKFIYA
YVLCMSASDRHKKLGIRLMNELITARFNVEECLYATAVCLYSQGEWQGAR
DKVDRLLRLNPDHRYGNELHLYVKDAQAKQDLAVGVGVGVGVLGATAAIL
LGAFLGGGRRGR*
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Synonyms
Publications