NO17G02480, NO17G02480 (gene) Nannochloropsis oceanica

Overview
NameNO17G02480
Unique NameNO17G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1235
Alignment locationchr17:733646..734880 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:733646..734880 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0003684damaged DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR004583DNA_repair_Rad4
Homology
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BLAST of NO17G02480 vs. NCBI_GenBank
Match: EWM24130.1 (hypothetical protein Naga_102424g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 3.500e-34
Identity = 83/134 (61.94%), Postives = 100/134 (74.63%), Query Frame = 0 
Query:  143 TRKELWRDFRIHTAHLALLTHRAHLLSHSASHPSLLSAAAALVPSALRRSLRRGPSVSALARLLLWFNATYTQLPDSTLTEEEGREGSCSPRQLLEVVSMREGGGAELIQVLVATLRGVGVRARFVSPLCPRSY 277
            TRKELWRDF IHTAHLALLT R  LLS  ASHPSLL+A+ A +P ALRR L +GP++  L RL  WF  T+TQL D+ L EEEG+EG+ SP +LL  +  +EG GA L+Q+L+A LRGVG +AR V PL PRSY
Sbjct:   77 TRKELWRDFHIHTAHLALLTQRTRLLSTHASHPSLLAASTAALPPALRRGLSQGPTLLGLQRLSRWFQDTFTQLSDAHLREEEGKEGA-SPPELLSALEAKEGSGAVLVQILLAMLRGVGAKARLVCPLSPRSY 209
The following BLAST results are available for this feature:
BLAST of NO17G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24130.13.500e-3461.94hypothetical protein Naga_102424g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02480.1NO17G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633450gene_9317Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102424g1gene6337Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02480.1NO17G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02480 ID=NO17G02480|Name=NO17G02480|organism=Nannochloropsis oceanica|type=gene|length=1235bp
ATGGGGACGCAGGCTACCACTGTAGTCGACAGCAGCAGTGGCAGCAGTGG
CGATGACAGGCAGGCCGCTGCAAGGGTGCACGGCCAAGTGGAAGTGGAAG
GCTTGATAAGGAAGCAAGgtatgtgtctgtgagccctactccaccctccc
ttccattttttcgtccgtccccatatacaaagactcgtatcgcacgcaca
aaaggataatgaagaggatttgaccgagaaactcgtaggcccttgaccca
ggcggtccttcattctgtcctccctccttttccttggcctcactctccct
ccttacttttctcctttcctccttccataccacgggtattcaaacctact
gaagCCGACGATGACGGAAATGATCGGGATGAAGAGGGAAAAGAGCAGGA
GGACGAGGATGATATGGAGTGGGAGGACGCAGACGATCTGGGCTTGCCGC
CATTGCCCCTCTTCGAGGAGGGAGGGCAGGAGGGAGGGGAGGACGAGGAA
AACGACGAAGAGGACGAGGATGAGGGAGACGAGGCCCTACGACGTTTTCT
GGACAGCAACGATGACGGCGGGCTGGTTGTCACCTTTGAAAAAGACGAGA
AGGAAAAAGAACGAGACACAGACAAGGCCAACCAGAAAAAACACGGGCTG
GCCTCGCGCCGGACACGGAAGGAGCTCTGGCGGGACTTTCGCATTCACAC
GGCTCATCTCGCCCTCCTCACCCACCGTGCCCACCTCCTCTCGCACTCCG
CCTCCCACCCGTCCCTCCTCTCTGCCGCCGCTGCCCTTGTCCCATCTGCC
CTCCGTCGCTCCCTTCGACGGGGACCTTCCGTCTCGGCGCTTGCTCGGCT
TTTGCTTTGGTTCAACGCGACCTACACACAGCTCCCTGATTCAACTCTGA
CAGAGGAGGAAGGGAGGGAAGGCTCTTGTTCCCCCAGGCAGTTGCTTGAG
GTGGTCAGTATGAGGGAGGGAGGGGGGGCGGAGCTGATTCAGGTGCTGGT
GGCGACCTTGAGAGGGGTCGGGGTAAGAGCGCGTTTCGTTTCGCCTTTGT
GCCCTCGAAGCTACCACCACCCGCCTTATCTGATCAGGCGAAGGAGGGAG
GCGAAGGGGGGGAAGGGGGGGAAGGAGGGAGGGTGGGCGATTGATTTGAC
GCAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGGGGGGCAGCAGGAGGGAA
GGGGAGGGGGAGGAAGGGAGGGAGGAAGGGGCTGA
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protein sequence of NO17G02480.1

>NO17G02480.1-protein ID=NO17G02480.1-protein|Name=NO17G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MGTQATTVVDSSSGSSGDDRQAAARVHGQVEVEGLIRKQADDDGNDRDEE
GKEQEDEDDMEWEDADDLGLPPLPLFEEGGQEGGEDEENDEEDEDEGDEA
LRRFLDSNDDGGLVVTFEKDEKEKERDTDKANQKKHGLASRRTRKELWRD
FRIHTAHLALLTHRAHLLSHSASHPSLLSAAAALVPSALRRSLRRGPSVS
ALARLLLWFNATYTQLPDSTLTEEEGREGSCSPRQLLEVVSMREGGGAEL
IQVLVATLRGVGVRARFVSPLCPRSYHHPPYLIRRRREAKGGKGGKEGGW
AIDLTQEEEEEEEEEGGQQEGRGGGGREGGRG*
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Synonyms
Publications