NO17G02420, NO17G02420 (gene) Nannochloropsis oceanica

Overview
NameNO17G02420
Unique NameNO17G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3614
Alignment locationchr17:710667..714280 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:710667..714280 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
[Close]
BLAST of NO17G02420 vs. NCBI_GenBank
Match: EWM24173.1 (hypothetical protein Naga_100296g6 [Nannochloropsis gaditana])

HSP 1 Score: 205.3 bits (521), Expect = 1.100e-48
Identity = 106/178 (59.55%), Postives = 135/178 (75.84%), Query Frame = 0 
Query:    2 VAASNDDDCASLARAIDLSLQGDVEARCFLEGLSTPDLDAGLNPLLSLWKASLQLFANAPDGTPYAYFIACLLRRNVRQQWGRTPPGTRAQLTQGTWETLCAYVQRRVESSISPSSNGNGNRILAELVVDPALSQLVSVVVAQSVTIEEAQAEAHAATRTLLTLALQYARNITPSSFS 180
            + +S+D D A+L RAID SLQGD EAR FLE LSTPDL AG++PLLSLWK SL LF ++PDGTP+AYFIAC+LRRNVRQQW  TP  TR QL +GTWETL AY ++R E  I P  N +   +L+ L+ DPA++QL+SVVVAQ+V IE+   EAHAATR L+++AL +A ++  +  S
Sbjct:    1 MTSSDDSDRATLVRAIDFSLQGDAEARRFLEDLSTPDLSAGIDPLLSLWKVSLDLFTSSPDGTPHAYFIACVLRRNVRQQWDFTPSQTRTQLAKGTWETLIAYAEKRAE--IPPQIN-SSRGVLSTLIADPAVNQLISVVVAQAVAIEDRNGEAHAATRQLISMALSHAGSVNKAQQS 175
The following BLAST results are available for this feature:
BLAST of NO17G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24173.11.100e-4859.55hypothetical protein Naga_100296g6 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02420.1NO17G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674038gene_9308Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02420.1NO17G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02420 ID=NO17G02420|Name=NO17G02420|organism=Nannochloropsis oceanica|type=gene|length=3614bp
AGGCTGTCCAGCACCAGGCCATGGTAGCAGCCAGCAATGATGACGACTGC
GCCTCGCTGGCCCGCGCGATCGACCTGTCGTTGCAAGGGGATGTTGAAGC
CAGGTGCTTCTTGGAAGGGTTATCGACCCCCGACCTGGATGCTGGCCTCA
ATCCCCTCCTCTCCCTCTGGAAAGCGTCTCTCCAGCTGTTTGCCAACGCC
CCAGACGGAACGCCATACGCCTATTTTATCGCCTGCTTGCTGCGCCGGAA
CGTTCGGCAGCAGTGGGGGCGGACGCCGCCGGGAACACGAGCCCAACTCA
CGCAAGGTACATGGGAAACGCTCTGCGCGTATGTTCAACGACGAGTCGAA
AGCAGCATTAGTCCCAGCAGCAACGGTAATGGCAACAGGATATTGGCAGA
ATTAGTCGTAGACCCTGCGCTGAGTCAGCTGGTCTCGGTGGTTGTCGCCC
AATCAGTGACCATCGAGGAAGCACAAGCCGAAGCCCACGCCGCCACCCGC
ACTCTCCTTACCCTTGCGCTGCAATATGCCCGAAATATCACCCCCTCCTC
CTTCTCCTCCTCTTCCGCGTCTTCTTTCTCTTGTCAAATACTGCAATTAG
CCAAGCTCCTCGTCAGTCTCCTCGTTCTCAGCTCTCTGGCAGAGGAGGCG
AAGGAAGGATTCGGCAGCAAGCTGGGGAAAAGCGTTCTCCCCGAAGCAGG
ATCCAACGTCTGCGAACTCGCCGTGCAAGCCTTTCTACAAGCCCCAGCAG
CAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCA
ACTACATCAACAGATACGGCATCAGTGGGAGAGGCGGGGGCGTTGGTCGT
AGTGGGAGCGAAAGCGTTGACGGGATGGGCCGTTTTTGGAGGGGTGGGGT
GGTGGTCTCTCGTAGGGATTGGACAGGCTTTGAAAGGAGGGTTGGATGCG
ATGGAAGAAGGGAGGGAGGGAGGGAGGGAGGGAAGGGTGTTGGTGAGGGT
GGCGGACGCGATGGAAGATATGGCAGGGGAGGTGGTGGGCAAGGTGGGGG
AGAGTGGAGGAGAGGACGAACAGGGAAGGGAAGGAATGGAGGACGAAGAA
GCGAAGGCGAAGGATGAGGCATTGGCGCAATTGGTGGGGGCATACATGTA
TTTATTTCGTCTGGCAAGGGGGCAGGAAGAGCCTCTATACCACGCTGCCC
GTGCCTTGGTTCATCTACTGCGGCTGCCCCGGGTGAGGGGGTGGGTGATG
AGCTCGCACCCTTCCTTCCATCGGCCCCTCGTGCTGGAGGCGCTTGGAAT
CTTGCTTCAAGGCGCAGGGGTGGGACATCGGCCTACTTCGTCCGTTTGTC
TGGAGGTCTGGATGGATCTGCATAGGGTCGGGTTGGAGAAACGGCCGGCG
GAGTTTTGCTTGCCTTTGTACGAGAGGCTGTTGCAGGTGGTGTTGGCGAG
GGCACAGTGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
AAGAGGAGGGGATGGTTGGCTGGGGGGAGTATAGGGAGCAAACGATGTAT
GAGGTGTTGTTTCGGTGTTATGACGTCATGCGGAGTCGGTACATCGAGAT
CGTTGTGGAGGAGGTGGAGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCAGGCCTCGTCTTGG
GCCTGGCGACCTTGTGAAGCGATTATATTCTCTTTTCGTGTCATTGCCCT
CGACTGTGTCCGTCGTGCACTCCTCGCTTTCTCCCCCCCCCATGCCGTCT
TGAACGCCACCCGTATAACCAATCGGGCCCTCGGCCTCTCCCTCTCCCCC
GACCTCGTCCGAGCCGACGGCGAAAAAACGTATGCCCTCCTCCTTCGTCT
GCTTCACTCTCTACTCTCCCTCGCTGCCTCCTCCTCCCCTTCCTCCCCGT
CTATCCTCCCTCCGAAGGTATGGGTAGCCATCATCCGCGCCCTCTCCCCC
CTCGGGCAGGTCCTCGCCAAGGCAGCCAGCAGCAGTAGCAGCAGCAGTAG
CGATCTCCCTATTCGCGTGATGCATGTCTTGATCATCTCCCTTCAGGTGC
CCTCCTGTCGGAAATATACGGCTCAGGCCATTCGCAACGTCACTGCCCGA
TGTGCAACCTTCTTCATTCAACAGCAGCAGCAGCAGCTACATCAACAACA
GTTTTCTCCCGTGCTGGTGGCTCTCATTGAGGCCTTGCATGCCACCGCTT
TCGCTTCCGCTGAAGACGCCGGCACCCTCACCACCTCAATCCTTTCCCTC
CTCCCTCCCTCCCACCCTCCTTCCCTCCCCAACTCGCTCACCGACCCCCT
CCTCGCCCGCCTCTCCTTCTTCACTTCCTCCGCTTGCTCCCTCTCATCAT
CCCTTCCCCGCATACTCTCGGACCTCGCCATCGTTTCCATCCTCCTTCAG
CGCCTCCCTCACTCCCTCGCCCTCGTCTTTCTCCGACAAGCCTGGACCCC
TCTCGCCCTCCTCACCACCACCTCTACCTCCTTCCTTCCCTCCCCCTCAT
CTTCTCCATTAGACCTTGCCTTGCTTGATTCTCTCTCCCGTGCTGCCACC
CTCCCGCTCTCCGTTCGTGCCCAGCACCGTTGTTCTGAAGAGGAGGGCGA
GGGCGGGAGGGAGGAGGGGGTGGGGGTGTTGGTGGCTGTGATCCGGACGC
TGCAGGAGGGGAGGATGAGGGAAAGGGCACCTTGTGGGTTCGTGAGAATG
TGCGGAGAGGTCTTAGAGGCCTGGGGACCTGCAGTAGAGAGTGGTCATAC
ATCGAGGGAGGAAGGGGAAGGATTGGCGCTGTTGCTGGATGAGGTAGGGA
GGTGCGTGGAGGAGGTGGAGAGGGAGGGAGGGAAGGAGGAGGGGGAGGAG
GTGAGGGAGGCGGTGGTATTGACATGGTCAGGGTGTCTGGATGCGTGTCC
GGGAGCGATGATGAGGAGGAAAGGGTTCAGGGGGGAGATGGGGGTGGTGG
CTCGATGGGCCACTTCGTTTCAGACACACGAATTCGCACAGGCGGCAATG
ATGCTACTGACGAGGTTCGTGGAGATGCCTCATCGGTTGCGGATGGAGGA
GGACGGGGAGGAGGGTGGGGAGGAGGGGAGGAGGAGGGAACTCATGGGAA
TGTGGAGGGGGGTGATGGATGGGATGGTGCTGGAATTGTCCTTGTTTTTA
ATGGCGGGTATGATGGGGACAGCACCTGAGACGACGCTCGATGCGCTTTC
CCAGCTGCTGCGCACCCTGCTCCTTCGTTTCCACTCTGTTATCCTACCAG
TCGTGGAGGTACTTTGCAAGAGTGCAGCTATCGACCCTACCCCCAGATCG
TCCTCCCTCCCTCCCTCCCTCCTCACGCCCGCGGGCTTGGACCTATGGAA
ACGCCTCAAGGAGCATCCTGGGCTGCACCCGCGCCTCGTGCGGTTGTTGC
GGCGTGCCACCCCACTCCCTTCCTCGTCTTCGCCCGTGGATACCCGGAAG
GCCGAGGGAGGGGGGGCGTGGATGGACTTGAGTTTGTTCCGGGACATGGG
CTTGGACGTGTGGGCCTACTGCCAAGGAAGCAAAGGCTTGGACGTGCTCG
ACGGTTACTTGTGA
back to top

protein sequence of NO17G02420.1

>NO17G02420.1-protein ID=NO17G02420.1-protein|Name=NO17G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1198bp
MVAASNDDDCASLARAIDLSLQGDVEARCFLEGLSTPDLDAGLNPLLSLW
KASLQLFANAPDGTPYAYFIACLLRRNVRQQWGRTPPGTRAQLTQGTWET
LCAYVQRRVESSISPSSNGNGNRILAELVVDPALSQLVSVVVAQSVTIEE
AQAEAHAATRTLLTLALQYARNITPSSFSSSSASSFSCQILQLAKLLVSL
LVLSSLAEEAKEGFGSKLGKSVLPEAGSNVCELAVQAFLQAPAAAAAVAA
AAAAAAAVAATTSTDTASVGEAGALVVVGAKALTGWAVFGGVGWWSLVGI
GQALKGGLDAMEEGREGGREGRVLVRVADAMEDMAGEVVGKVGESGGEDE
QGREGMEDEEAKAKDEALAQLVGAYMYLFRLARGQEEPLYHAARALVHLL
RLPRVRGWVMSSHPSFHRPLVLEALGILLQGAGVGHRPTSSVCLEVWMDL
HRVGLEKRPAEFCLPLYERLLQVVLARAQWEEGEEEEEEEEEGEEEGMVG
WGEYREQTMYEVLFRCYDVMRSRYIEIVVEEVERQQQQQQQQQQQQQQQQ
QQQQVQASSWAWRPCEAIIFSFRVIALDCVRRALLAFSPPHAVLNATRIT
NRALGLSLSPDLVRADGEKTYALLLRLLHSLLSLAASSSPSSPSILPPKV
WVAIIRALSPLGQVLAKAASSSSSSSSDLPIRVMHVLIISLQVPSCRKYT
AQAIRNVTARCATFFIQQQQQQLHQQQFSPVLVALIEALHATAFASAEDA
GTLTTSILSLLPPSHPPSLPNSLTDPLLARLSFFTSSACSLSSSLPRILS
DLAIVSILLQRLPHSLALVFLRQAWTPLALLTTTSTSFLPSPSSSPLDLA
LLDSLSRAATLPLSVRAQHRCSEEEGEGGREEGVGVLVAVIRTLQEGRMR
ERAPCGFVRMCGEVLEAWGPAVESGHTSREEGEGLALLLDEVGRCVEEVE
REGGKEEGEEVREAVVLTWSGCLDACPGAMMRRKGFRGEMGVVARWATSF
QTHEFAQAAMMLLTRFVEMPHRLRMEEDGEEGGEEGRRRELMGMWRGVMD
GMVLELSLFLMAGMMGTAPETTLDALSQLLRTLLLRFHSVILPVVEVLCK
SAAIDPTPRSSSLPPSLLTPAGLDLWKRLKEHPGLHPRLVRLLRRATPLP
SSSSPVDTRKAEGGGAWMDLSLFRDMGLDVWAYCQGSKGLDVLDGYL*
back to top
Synonyms
Publications