NO17G02410, NO17G02410 (gene) Nannochloropsis oceanica

Overview
NameNO17G02410
Unique NameNO17G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4039
Alignment locationchr17:706340..710378 +

Link to JBrowse

Properties
Property NameValue
DescriptionSugar transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:706340..710378 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0055085transmembrane transport
GO:0008643carbohydrate transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR011701MFS
Homology
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BLAST of NO17G02410 vs. NCBI_GenBank
Match: EWM24167.1 (sugar transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 1.000e-81
Identity = 240/466 (51.50%), Postives = 294/466 (63.09%), Query Frame = 0 
Query:  322 LGPNQLRLVCFGGYALVLLSMYGISPFFQKDAQSRIHMAPSLAGLVFSLSALTSMLVTPLAAHLCKFLGRFQTLFLGYLTSLTANAGFSFSTSTAYMTVFRGFQGVAMGLVAVASMTLLIAGSDNIVRDMGLQEMTISLILIVAPILGGTFYAYLPGAEWAYLAMSAPLVVVVICLAVFL-------GERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGEGEGEVGKKEWGDEARGTTATSSFSTLPSGVDLNEXXXXXXXXXXXXXXVP---------------------------------RVDNGGKDEKDLLEQRQQE-----PLRVWSNPRVILIALAITLTFAAQGFLALSFGIHTRNLLSLSAAGAGAMYIAFSLPYALMGLVIGPLSRRFPSSSLLAHGALLEAVGLLLLGPPPXXXXXXXXXXXXXXXXXXXXXXLPWAWVLTVGGMLCLG 743
            LG  QLRL+CFGGYA +LL+MYGISPFFQ+DAQSR+ +  SL GL FSLSALTSML+TPLAAHLC+  GR++TLFLGY+ +L AN GF+ S ++  +  FR  QG+AMGLVAVASMTLLIAG+ +IV++MGLQE+ IS+ LI+APILGG FY  +   E  YLA+SAPL+ +V+ L   L       G ++                                 G   GE GK+E G +    TA  SF+++PS V+  E  XXXXXXXXXXXX                                    V +GG D K     R  E       +VW +PRV+LIA+AITLTFA+QGFLALSFG+H+RNLL L++   G  Y AFSLPYALMG+VIGPL+RR  SS+L+ +G LLEA+GLLLLGPPP    XXXXXXXXXXXXXXXXXX   +W     GMLCLG
Sbjct:  262 LGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVM-SVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQG---GEEGKEE-GWQGGKQTAPVSFASIPSLVEREEEGXXXXXXXXXXXXWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPXXXXXXXXXXXXXXXXXXXXPSW-----GMLCLG 717
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BLAST of NO17G02410 vs. NCBI_GenBank
Match: EWM20408.1 (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 8.900e-9
Identity = 55/175 (31.43%), Postives = 86/175 (49.14%), Query Frame = 0 
Query:  327 LRLVCFGGYALVLLSMYGISPFFQKDAQSRIHMAPSLAGLVFSLSALTSMLVTPLAAHLCKFLGRFQTLF--LGYLTSLTANAGFSFSTSTAYMTVFRGFQGVAMGLVAVASMTLLIAGSDNIVRDMGLQEMTISLILIVAPILGGTFYAYLPGAEWAYLAMSAPLVVVVICLAV 500
            LR + F    L  +S+   +PF Q   +     +   AGLVF++  L ++L +PL A LC+  GR + L    G L SL A  GF  + S     + RG QG+   L  +A + LLI  + ++  D+  QE+ + + ++VAP LGG  Y        +    +A  VV+ +C  V
Sbjct:   39 LRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCR-AGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLY--------SLAGFAAVFVVLAVCFGV 204
The following BLAST results are available for this feature:
BLAST of NO17G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24167.11.000e-8151.50sugar transporter, partial [Nannochloropsis gadita... [more]
EWM20408.18.900e-931.43vesicular acetylcholine transporter, partial [Nann... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003026NSK003026Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02410.1NO17G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606327gene_9307Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02410.1NO17G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02410 ID=NO17G02410|Name=NO17G02410|organism=Nannochloropsis oceanica|type=gene|length=4039bp
GCAGGTGTATGTGTGGATGAGAGGGGGCCAGGGCAGGAAGTATCAAAATC
GATCTTTTTGTGTGGAACCAACATTTTCTCGATTTCCATCCGCACTTTTA
TGGCAAGCTCGAAACTGTTGTTTCAACAATAAAGAAAAGAGTGATAAGAA
TCCGTTTGTCAAGATATGTTACTGGTGTGGTGGTGAACTGTCCTGGGGGC
TCTGGACTATGCATTGCCCGGCAAACACTCGAAGCAAGGACATGAAAACT
CAAGTACGTTGCATCTCTCGTTTTCCTGTGTGCTTGCAGTGACTTTTTGT
TTGTGGATTTTCACACTCCTGGCCCTAAACCACGCAGTCCTGTTCCTCTT
CATGCGTGATGTCAAGAAGATAGTGGAATCATTTTTGGCCCTGATAGCGA
TTTGGAATGCATGTGACATCCGTGTTTACCCTTTCAAACCACCTAAACCC
TGAGATGGTCTCCTACACAACTTTCTTCACACGACACACACCTGACACGA
AATAGATGCAATCGAAACAGTGTTATGAGGCAAACAACAATATCTTTCTC
GAGAGATCTCACTTGTCCCTACTACATTTGACCGGCCTCTTTTCGAGTTA
GTGATACCTCCCACCGACGAGTGCCTTCTCCTCTGTCCGATTAAAGCTAT
TCACTTTTTTCTGTCTTTCTCCCCTGCATTCATACAGCATCCTTTCCCTT
CTTTCTGTTGCAATGTTAATGCATTGGATAAGGCTGAAATCCCGGCAAAC
TTACTGCCCGCAAAAAGAGATTTTGTAAGTGCGTGGTCGCCATGGGTGAT
GTCATCGGACACAAACGATAAGAAGCGCATGCTTCGATCATAAGAATACC
TTCATATGTCCCCTCTCCATTTGGTATAAATAGCAGTAGTAGGAGTGGTA
GTCTCGCTGTGTTGCTTTCACAGCAAAGGACTGTTTTTGACTTCTTGCCC
TGCCCCATGCATGACCCCCTTCGACCAAAACTGTGCTGGCACGACAAACA
CCAAATGCCCCTCCCCCCCAAAAAAAGTACCATACTATATATATGACAAT
TAAATCACCTGTGTTGAGTCATGACAGCACTTTGCCTCTGTATCCTCTTG
GCAATATTGGTGAACAGGCAAGGCAAATGGTGACTTTTACTTTTCGACGT
CCCCTCACGCACTCTACACGGCTCAAAATCTTCGTCACAGCGAGCTGCAC
GGCGGGCGGCCCAAGTAGAATCGTATCCTCCCGGCCGTGCGCATCATCCA
TGGCACAACTCCCACAAATGCAAATAAGCAGCTATGCAGTTCACGGTGGG
GAGGAGCAGGAGGTGGAACCCGAGCTGGTCTCCACCATCGACTCCGCCGC
TACTCTTCCCCGCTCCTTCATGCCTGCCCTCCCAAACTCTCCTCCACCTT
TACATACACCATCGATCAGTGCTTTCAACCCATACGCCGCCCCAGGGCGC
GGTTACCGGCATTCAGTTACACAGCCCCATGCTGTCAGCGCTTGCCCTGG
GTCCAGCTCGTCTTCACTGCCGGTAATGATGCCAGTCAGCGTCCGCCCCA
GTAGCGCCCCACCTCCTACAGCTTCTTCTCACCATTACCACCTCTCCCAA
CAATCGCGTGTGCGAAAAAGTCGCTCCTTGCGGAGGACAGGGTCACATGG
TTCTATTGCCATGTCATTGGTCTTGGCCGGTGGAGGAGCAATGGGTCGAG
GGGCGTCATATGAAAGTTTGACTACAGTGGCAGCCGCAGCCCGGGCGGCC
TCGGAAGCGATCATTGGGAACGGAAATGAGGGGGAGGAGGAGGAGAAGGA
GGAGAAAGGAGAAGAAGAAGAGGATGAAAGGGAGGAGAAGGAGAAGGAGA
AGGACGACAATGAGGAGAAAGCGGCTGACCTGGAGAGGAAAGAGGGGGCA
TTCCTCCCTCCTCCCTCCTCCTCGCCCACCAAGACTACTACAGCCTATAA
AAGGTCTCTTTTACACAATGGAACCATCCACCATCACAAGCGGACCTTGA
CGAAACTGGGTCCAAATCAACTCCGCCTGGTCTGCTTTGGGGGGTACGCT
CTTGTCCTCCTCTCCATGTACGGCATTTCTCCCTTTTTTCAAAAAGACGC
ACAAAGCCGCATTCACATGGCCCCATCCCTCGCGGGACTCGTCTTTTCCC
TCTCGGCCTTGACCTCCATGCTCGTTACCCCCCTCGCGGCCCATCTTTGT
AAATTCCTCGGTCGTTTTCAAACCTTATTCCTCGGGTATCTGACTTCCCT
CACCGCCAACGCCGGCTTCAGCTTTTCAACAAGCACAGCATATATGACCG
TCTTTCGGGGCTTCCAGGGGGTGGCCATGGGTCTGGTTGCCGTGGCATCT
ATGACCCTCCTTATTGCGGGATCGGACAACATCGTCAGGGATATGGGCCT
GCAGGAGATGACGATTTCACTCATTCTGATCGTCGCGCCCATCCTGGGAG
GGACCTTTTACGCGTATTTGCCGGGGGCTGAGTGGGCGTACCTTGCCATG
AGTGCGCCATTGGTGGTGGTTGTGATATGTCTGGCGGTCTTTCTAGGGGA
AAGGCAGAGGAAGCAGCGGCAGGAGTTGCAACAGGAGTTGCAGCAGCAGT
TGCAACAGCGGCAGCAGCAGCGGCAACAGCGAGCGCGATTGCCGTTGAGG
GCGATGGGAGAGGGTGAGGGAGAGGTAGGGAAGAAGGAGTGGGGGGATGA
AGCGCGGGGGACGACGGCGACATCCTCGTTCTCGACCTTACCCTCGGGAG
TGGACTTGAACGAGGAGATAAAGGAGGGTGATAGGGAGGGAGGGAGGGAG
GGAGGCGTGCCACGTGTTGACAACGGTGGGAAAGACGAGAAAGATCTACT
AGAACAACGACAACAGGAACCCCTGCGTGTGTGGAGCAACCCCCGGGTCA
TTCTCATTGCACTGGCCATCACCCTGACATTTGCGGCGCAGGGCTTTTTG
GCTCTGTCGTTCGGAATACATACCCGGAACTTGCTAAGTCTGTCAGCCGC
CGGTGCGGGGGCCATGTACATTGCGTTTTCCCTCCCTTACGCATTAATGG
GCTTGGTGATAGGGCCACTGTCCCGTCGCTTTCCCTCCTCGAGCCTCCTC
GCGCATGGCGCTCTCTTGGAAGCCGTCGGCTTATTGCTCCTTGGGCCCCC
GCCTGCCCTCCCTCCCTCCCCCGGCCCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTTCTCGCCTTCCCTCTTGCCGTGGGCATGGGTCCTGACTGTAGGG
GGCATGTTGTGCCTCGGGGTTGGTATGGGCCTCATCACGATGCCAGCCAT
CGACGCCATGCGCACGGCCTTGCTCGGCCCGCCCTCCTTCCCTCCCTCCC
TCCCTCCCTCCTCCTCCCCCTCCCCCATCTCCTCGGGAATGAGACTTGAG
GAAAAGAGGGAAGAGAGGGATGGACCGGAAGGATTAGATGAGGCATTGGC
CAGTGTGATGAGCTTTTCCTTGTCACTAGGGGCGTTTTTAGGGCCCATGG
TGGGAGGGCTGGGCATCCAAGTGCTCCCCCACACCCGGGAATTTAATTGT
TCGGTGAGGGGGAGGAGAAAGGGGTGGGAGGATGGGGGGGAGGACGACTG
TGTGAGCGGGTACCGCTGGACATGCCTGGTGTTGAGTATCGTGTGCTTGG
TCGTGTGGGTGCTGTTGGTGTGGTCGGCAAGGAGGGATAGGGTGAGGGAG
AGGGAGAGGGAGGGGAGTGAGGGGTGGAGGAGGAGGAGGTGGGAGGTGGA
GATGGTGGAGGAAGGGAAGGTGAGAAAGAGTGAGGAGGGGGAGGAGAAGA
TGTCAGGGAATGAGAGGAAGGAGCCTATCTATGTACAAAAGCTGGGCACT
ATGATGTGGAGTCCATCAACGAATGAGCTTGAGGGCAGGCTTCATCTTGG
AGGGGAGGGAAGGCAAGGGGAGGGGGAGGACGAGAAGGAGGAATGGAAGG
AAGGAGGAGGGTGGGAGGGTGAGGAGATGTGGGAGGAAGGGGAGGGGCGT
CTTCCGCGTGCGCCACAGTTCCATGTCTTGGAGTTTTAA
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protein sequence of NO17G02410.1

>NO17G02410.1-protein ID=NO17G02410.1-protein|Name=NO17G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=999bp
MTIKSPVLSHDSTLPLYPLGNIGEQARQMVTFTFRRPLTHSTRLKIFVTA
SCTAGGPSRIVSSRPCASSMAQLPQMQISSYAVHGGEEQEVEPELVSTID
SAATLPRSFMPALPNSPPPLHTPSISAFNPYAAPGRGYRHSVTQPHAVSA
CPGSSSSSLPVMMPVSVRPSSAPPPTASSHHYHLSQQSRVRKSRSLRRTG
SHGSIAMSLVLAGGGAMGRGASYESLTTVAAAARAASEAIIGNGNEGEEE
EKEEKGEEEEDEREEKEKEKDDNEEKAADLERKEGAFLPPPSSSPTKTTT
AYKRSLLHNGTIHHHKRTLTKLGPNQLRLVCFGGYALVLLSMYGISPFFQ
KDAQSRIHMAPSLAGLVFSLSALTSMLVTPLAAHLCKFLGRFQTLFLGYL
TSLTANAGFSFSTSTAYMTVFRGFQGVAMGLVAVASMTLLIAGSDNIVRD
MGLQEMTISLILIVAPILGGTFYAYLPGAEWAYLAMSAPLVVVVICLAVF
LGERQRKQRQELQQELQQQLQQRQQQRQQRARLPLRAMGEGEGEVGKKEW
GDEARGTTATSSFSTLPSGVDLNEEIKEGDREGGREGGVPRVDNGGKDEK
DLLEQRQQEPLRVWSNPRVILIALAITLTFAAQGFLALSFGIHTRNLLSL
SAAGAGAMYIAFSLPYALMGLVIGPLSRRFPSSSLLAHGALLEAVGLLLL
GPPPALPPSPGPSSSSSSSSSFSPSLLPWAWVLTVGGMLCLGVGMGLITM
PAIDAMRTALLGPPSFPPSLPPSSSPSPISSGMRLEEKREERDGPEGLDE
ALASVMSFSLSLGAFLGPMVGGLGIQVLPHTREFNCSVRGRRKGWEDGGE
DDCVSGYRWTCLVLSIVCLVVWVLLVWSARRDRVREREREGSEGWRRRRW
EVEMVEEGKVRKSEEGEEKMSGNERKEPIYVQKLGTMMWSPSTNELEGRL
HLGGEGRQGEGEDEKEEWKEGGGWEGEEMWEEGEGRLPRAPQFHVLEF*
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Synonyms
Publications