NO17G02390, NO17G02390 (gene) Nannochloropsis oceanica

Overview
NameNO17G02390
Unique NameNO17G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1864
Alignment locationchr17:702256..704119 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlutaredoxin-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:702256..704119 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR004480Monothiol_GRX-rel
IPR002109Glutaredoxin
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO17G02390 vs. NCBI_GenBank
Match: EWM24161.1 (glutaredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 228.0 bits (580), Expect = 2.000e-56
Identity = 122/156 (78.21%), Postives = 136/156 (87.18%), Query Frame = 0
Query:    1 MRSLFLVAAVLLVSLQATLGFLLPFPSTPR---SLSSPLRSSMAPGEEAAERAAATDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLAELKK 154
            MR LF     LL+SLQ+ LGFL+P   +PR   S S PLRSSMAPG+EAAER+AA +KIKS+V +NKVMLFMKGSKLFPQCGFSNTAVSILRA DAEFETFDVLSD LVREEIK +S+WPTIPQC++NGEFVGGSDILLEM+ESGELEKTLAELKK
Sbjct:    1 MRVLFF-TCTLLLSLQSILGFLIPPAPSPRPRISSSFPLRSSMAPGDEAAERSAAVEKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLAELKK 155          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: XP_005762961.1 (hypothetical protein EMIHUDRAFT_78687 [Emiliania huxleyi CCMP1516] >XP_005792613.1 glutaredoxin [Emiliania huxleyi CCMP1516] >EOD10532.1 hypothetical protein EMIHUDRAFT_78687 [Emiliania huxleyi CCMP1516] >EOD40184.1 glutaredoxin [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.8 bits (364), Expect = 2.200e-31
Identity = 64/93 (68.82%), Postives = 80/93 (86.02%), Query Frame = 0
Query:   54 DKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEK 147
            D+IK+MV  NK+ LFMKGSKLFPQCGFSNTAV IL + + E+ETFDVL+D+ VR+ +KT+S WPTIPQC+I GEFVGG D+L+EMY+SGEL +
Sbjct:    6 DRIKAMVEGNKIFLFMKGSKLFPQCGFSNTAVQILNSYNVEYETFDVLADNAVRDGVKTYSNWPTIPQCYIEGEFVGGCDLLIEMYQSGELSE 98          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: XP_009032378.1 (hypothetical protein AURANDRAFT_18629 [Aureococcus anophagefferens] >EGB12728.1 hypothetical protein AURANDRAFT_18629 [Aureococcus anophagefferens])

HSP 1 Score: 138.7 bits (348), Expect = 1.600e-29
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = 0
Query:   11 LLVSLQATL-GFLLPFPSTPRSLSSPLRSSMAPGEEAAERAAATDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTL 149
            L+ +L AT   F+ P  + PR   SP R   A  +      A T +I+SMV DN VMLFMKG+K+FPQCGFSN AV IL A+  +FET+D LSD  VR  IK FS WPTIPQ +++GEFVGGSDI+LEMYE+GEL++ +
Sbjct:    7 LIAALAATASAFVAPGAAAPR--LSPRR---AGDDVEPPPDATTKRIQSMVDDNTVMLFMKGTKIFPQCGFSNMAVQILNAIGQDFETYDCLSDENVRSTIKEFSDWPTIPQLYVDGEFVGGSDIMLEMYEAGELQEMI 140          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: WP_015123948.1 (Grx4 family monothiol glutaredoxin [Synechococcus sp. PCC 6312] >AFY60404.1 monothiol glutaredoxin, Grx4 family [Synechococcus sp. PCC 6312])

HSP 1 Score: 137.9 bits (346), Expect = 2.700e-29
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0
Query:   55 KIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLA 150
            KI S+V  NK+M+FMKGSKL PQCGFSNTAV IL ++ A FETFDVL+D  VR+ IK +S WPTIPQ +INGEFVGGSDIL+E+Y+ GEL++ +A
Sbjct:    8 KIDSLVKSNKIMVFMKGSKLMPQCGFSNTAVQILNSLGAPFETFDVLADYEVRQGIKDYSNWPTIPQIYINGEFVGGSDILIELYQKGELQEMVA 102          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: WP_013191654.1 (Grx4 family monothiol glutaredoxin [Trichormus azollae] >ADI64638.1 glutaredoxin-like protein ['Nostoc azollae' 0708])

HSP 1 Score: 136.0 bits (341), Expect = 1.000e-28
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 0
Query:   54 DKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTL 149
            +KI ++V  NK+M+FMKG+KL PQCGFSN  V IL  +   FETFDVLSDS +R+ IK +S WPTIPQ +INGEFVGGSDIL+EMY+ GEL++T+
Sbjct:    7 EKIDNLVQQNKIMVFMKGNKLMPQCGFSNNVVQILNTLGVPFETFDVLSDSEIRQGIKEYSEWPTIPQVYINGEFVGGSDILIEMYQKGELQQTV 101          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: XP_002294502.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88336.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 134.4 bits (337), Expect = 3.000e-28
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 0
Query:   50 AAATDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLAELK 153
            +A  DKI+S+V +N V+LFMKGSKLFPQCGFSNTA  IL++ + +F T DVL+D  VR+ +K FS WPTIPQ ++ GEF+GGSDI++EMY+SGEL + + + K
Sbjct:   51 SATNDKIQSLVDENPVLLFMKGSKLFPQCGFSNTACQILQSYNIDFHTVDVLADDEVRQGVKVFSDWPTIPQLYVCGEFIGGSDIMIEMYQSGELGEMIEKAK 153          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: KOO34091.1 (glutaredoxin-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 134.4 bits (337), Expect = 3.000e-28
Identity = 76/142 (53.52%), Postives = 100/142 (70.42%), Query Frame = 0
Query:    7 VAAVLLVSLQATLGFLLPFPSTPRSLSSPLRSSMAPGEEAAERAAATDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAV----DAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGEL 145
            VA++L+++L +     L  P TP   SS  R S  P   +   A   D+I+ M+ADNKV+LFMKG K+ PQCGFSNTAV IL+AV      +F+TF+VL+D+ VRE IK  S WPTIPQC+I+GEFVGG D+L+EMY++GEL
Sbjct:    4 VASMLVLALSSAAA--LQLPQTP--ASSVRRRSPPP---SLNEAMTKDRIEKMIADNKVLLFMKGDKIQPQCGFSNTAVMILKAVTESAGCDFQTFNVLADNDVREGIKKHSNWPTIPQCYIDGEFVGGCDLLIEMYQNGEL 138          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: PDH33115.1 (monothiol glutaredoxin, Grx4 family [Candidatus Thioglobus sp. MED-G23])

HSP 1 Score: 134.0 bits (336), Expect = 3.900e-28
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 0
Query:   53 TDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLAE 151
            + +IK  V  N+VMLFMKG++ FPQCGFS  A+ IL+A+ AEFET DVL D  +R+ IK FS WPT+PQ +INGEFVGGSDI++EMYE+GEL+K L++
Sbjct:    4 SQRIKETVDSNRVMLFMKGNRDFPQCGFSGRAIQILQALGAEFETADVLMDDEIRQGIKEFSNWPTVPQLYINGEFVGGSDIMMEMYENGELKKALSQ 101          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: KRO76948.1 (glutaredoxin [Methylophilales bacterium BACL14 MAG-120910-bin43] >KRP07058.1 glutaredoxin [Methylophilales bacterium BACL14 MAG-120920-bin58])

HSP 1 Score: 132.9 bits (333), Expect = 8.600e-28
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 0
Query:   54 DKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLA 150
            DKI S++ +NK++LFMKGS  FPQCGFS+ A  IL A DA +ET DVL D  +RE IKTFS WPTIPQ +IN EFVGG+DI+ EMYESGEL K ++
Sbjct:    5 DKINSLIENNKILLFMKGSPKFPQCGFSSLACQILTACDANYETVDVLQDQDIREGIKTFSNWPTIPQLYINKEFVGGADIIREMYESGELAKVIS 100          
BLAST of NO17G02390 vs. NCBI_GenBank
Match: XP_005767573.1 (glutaredoxin, partial [Emiliania huxleyi CCMP1516] >EOD15144.1 glutaredoxin, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 131.3 bits (329), Expect = 2.500e-27
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 0
Query:   54 DKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDVLSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLE 138
            D+IK+MV  NK+ LFMKGSKLFPQCGFSNTAV IL + + E+ETFDVL+D+ VR+ +KT+S WPTIPQC+I GEFVGG D+L+E
Sbjct:    6 DRIKAMVEGNKIFLFMKGSKLFPQCGFSNTAVQILNSYNVEYETFDVLADNAVRDGVKTYSNWPTIPQCYIEGEFVGGCDLLIE 89          
The following BLAST results are available for this feature:
BLAST of NO17G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24161.12.000e-5678.21glutaredoxin-like protein [Nannochloropsis gaditan... [more]
XP_005762961.12.200e-3168.82hypothetical protein EMIHUDRAFT_78687 [Emiliania h... [more]
XP_009032378.11.600e-2955.40hypothetical protein AURANDRAFT_18629 [Aureococcus... [more]
WP_015123948.12.700e-2967.37Grx4 family monothiol glutaredoxin [Synechococcus ... [more]
WP_013191654.11.000e-2864.21Grx4 family monothiol glutaredoxin [Trichormus azo... [more]
XP_002294502.13.000e-2859.22predicted protein [Thalassiosira pseudonana CCMP13... [more]
KOO34091.13.000e-2853.52glutaredoxin-like protein [Chrysochromulina sp. CC... [more]
PDH33115.13.900e-2862.24monothiol glutaredoxin, Grx4 family [Candidatus Th... [more]
KRO76948.18.600e-2864.58glutaredoxin [Methylophilales bacterium BACL14 MAG... [more]
XP_005767573.12.500e-2769.05glutaredoxin, partial [Emiliania huxleyi CCMP1516]... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02390.1NO17G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606319gene_9304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02390.1NO17G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02390 ID=NO17G02390|Name=NO17G02390|organism=Nannochloropsis oceanica|type=gene|length=1864bp
GTGCACGTTGCTAAGGCAACATGACCCTCAAGGAACAGTATCCTTTGCTT
CAGTTTTCGTCACTCCGTCACTCGAAGCGGGAGACAGTGCTTGTGATATG
TGTTTTTGGGGCTGCGGCAGTCGTGAACGACAGACAAAGAAGGACTTAAG
GATTTGAGTATGAGGAGGCCGATTCTACACGCATGTCTTGTGCTGTGCAA
GTGCGCCATGCTGCGTCTAATTCTTCTTCTCTACGGCAAGCTTATTCCCG
TCCTTTCACGCGCACACGCCTTATCCTAGGATAGGATTGTCGTGCCTGTG
CTCTTGATGGACCGGTAGCCGGTGTCGTTGTGTCGATGTAGCCCTCCCTC
ATCTCCTCTCCTCTCCTGCATCAACTTGCACGCCTCAACTTAACTTAATT
CCATATTCCGCCCCATACTACACCACTATAGCGCCTCAACCAGCGTATAT
TATGCGTTCCCTATTCCTCGTCGCCGCTGTTCTCCTCGTCTCCTTGCAAG
CCACTCTTGGCTTTCTCCTCCCCTTCCCCTCCACCCCTCGCTCCCTCTCC
TCCCCCCTTCGCTCCTCCATGGCCCCCGGCGAGGAGGCTGCGGAACGGGC
AGCGGCCACCGATAAAATCAAGTCGATGGTAGCCGACAACAAGGTCATGT
TGTTCATGAAGGGCTCAAAGCTGTTCCCTCAGTGTGGATTCTCCAACACT
GCGGTCTCTATTCTTCGGGCCGTCGATGCCGAGTTTGAGACGTTTGATGT
ACTGAGCGgtgcgtattacggaataggggatggagaggaagggagggaga
gaatggttgatctctaaaaatgaaaaagggaaatcattcaatatagcaac
accatgcatccggtcacgcgtacgcagacatacacacgtatgaaaaaaaa
aacatgatatttaaccacacacttgtatccacatccacacactctctcac
atatacacgcacaaccaaacagACTCATTGGTGCGAGAAGAGATCAAGAC
ATTCAGCGCCTGGCCCACCATTCCCCAGgtgggtaagattttatcgtggc
ttcgcgcgcgtctctttttctctcctcctttgctcaccctccctccttcc
ttacctctctccttccttctctctccatcctatcctttctaccagTGCTT
TATCAACGGAGAATTTGTGGGGGGAAGTGACATTCTGCTGGAGATGTACG
AGAGTGGGGAGCTAGAAAAGACTTTGGCTGAATTGAAAAAGTGATCTGAA
TTTCCGTTAGAAAAGAAAAAACATCTAAATTAGACAAAGGGCGCGAGGGT
GTGGTCTGCTGCTAGAGAAGGAAGTGGAATAGCGCTAGCACACATAAATG
AAAGTAGGGAGCAGCGAGAGGGAGGGTAGTGGTAGGAGTTTGGGAAAGGA
AAGAAAGGAGGAGGAAGACAAAGCACCAGCCACTCTCTCCATCAACAGGC
AACATTCACAAGGGTTCCAACAGAAATTCAGAAGTGAATCGACACAGTGA
AAACTCACTCAAAATCAAAAGAGGCCTGAAAAACGGCATCACACACACAA
CCACGTTAATTCTTTATCCATCTCTGTCATCCGTTCTCCTTCTCTGCTTT
GCTCGCTGGCCGTCTTCATCGTCTTCACATTGATCCTTCTCCTATATCTG
TTTCACTGGTTTTCGCTATCTCCTCTTTCCTCCTCTGGCTCGATCATCGC
TCTTCTATTGTTCCTTGCGCAACATCTGTGTCTCTCACTTTCGCTATCTC
CTTTTCCTTCCTCTTTCTAAATCATCAACCTTGCCTTTGTTGTCGCTTTC
TCTTCTTTCCTCACTCTTTAAAATGTATGCATCTGTTACTGGACAACCCT
CCCTCCCTCCCTCC
back to top

protein sequence of NO17G02390.1

>NO17G02390.1-protein ID=NO17G02390.1-protein|Name=NO17G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRSLFLVAAVLLVSLQATLGFLLPFPSTPRSLSSPLRSSMAPGEEAAERA
AATDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDV
LSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLAE
LKK*
back to top
Synonyms
Publications