NO17G02310, NO17G02310 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02310
Unique Name	NO17G02310
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4409
Alignment location	chr17:676856..681264 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:676856..681264 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Homology

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: EWM26518.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 4.400e-20
Identity = 53/86 (61.63%), Postives = 67/86 (77.91%), Query Frame = 0

Query:  180 ALMALNLTSKQEEEFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIREPFASFQARRGW 266
            +LM+L    + E +F GAVF++GL+ SSP+VLMD MP T T+TTEH+KSHLQKYRLH QRS EEF+ +Y  ++R PFASF ARR W
Sbjct:  308 SLMSLRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREW 393

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: CBJ29351.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4 bits (176), Expect = 7.700e-9
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0

Query:  192 EEFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFY 249
            ++F  AVF +GLK +SP++L++ MP    +T+EH+KSHLQKYRLH QRS EEF+  Y
Sbjct:  142 QDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 198

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: OEU21412.1 (hypothetical protein FRACYDRAFT_235035 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.2 bits (165), Expect = 1.500e-7
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0

Query:  193 EFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIR 254
            +F  A+F +GLK SSP  +++HM     ITTE +KSHLQKYRLH  +S +EF++ Y   +R
Sbjct:  298 DFVSAIFDVGLKHSSPATILEHMSKHEQITTERIKSHLQKYRLHRVKSKKEFISSYEASLR 358

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: EWM27574.1 (two-component response regulator arr12 [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 1.900e-7
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 0

Query:  149 ASPGRPRRQGVLTRGAKAGHGSDPGSAAFEEALMALNLTSKQE---------EEFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIREPFASFQARRG 265
            AS  R ++   L  G + G G      A E A +    +  ++          +F  A+F +GLK +SP+ +M+ M +T  +T +H+KSHLQKYRLH +R+ EEF+  +    + PF +  A  G
Sbjct:   14 ASSARHQQLNHLADGTEGGAGPHQYRGASENASVTSESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFG---KNPFVAGAAGTG 135

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: XP_002181659.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46873.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.4 bits (163), Expect = 2.500e-7
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 0

Query:  193 EFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIRE 255
            +F  A+F +GLK+SSP  +++ MP  + +T+E +KSHLQKYRLH  +S ++FMT Y   +R+
Sbjct:  231 DFVSAIFDVGLKQSSPSTILETMPKHADVTSERIKSHLQKYRLHRIKSKQDFMTAYDATVRK 292

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: GAX20002.1 (hypothetical protein FisN_1Lh524 [Fistulifera solaris])

HSP 1 Score: 67.0 bits (162), Expect = 3.300e-7
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0

Query:  193 EFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFY 249
            +F  AVF +GLK SSP  +++HMP    I +E VKSHLQKYR++  +S +EFMT Y
Sbjct:  182 DFVAAVFDVGLKHSSPSAILEHMPAHEQINSERVKSHLQKYRINRNKSKKEFMTAY 237

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: GAX97031.1 (Hypothetical protein PINS_004913 [Pythium insidiosum])

HSP 1 Score: 67.0 bits (162), Expect = 3.300e-7
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query:  194 FAGAVFQIGLKRSSPRVLMDHMPDTST---ITTEHVKSHLQKYRLHHQRSNEEFMTFYRE 251
            F  A+F +GLK +SP+ L+  M  T+    +TTEH+KSHLQKYRLH+ +S  EF+ FY E
Sbjct:   77 FVAAIFDLGLKNASPKALLPFMQPTAAHAGLTTEHLKSHLQKYRLHYDKSRAEFLAFYEE 136

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: OQR81572.1 (hypothetical protein THRCLA_11609 [Thraustotheca clavata])

HSP 1 Score: 66.6 bits (161), Expect = 4.200e-7
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0

Query:  194 FAGAVFQIGLKRSSPRVLMDHM--PDTST-ITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIREPFASFQARRG 265
            F  AVF +GLK +SP+ L+  M  P TS+ +TTEH+KSHLQKYRL++ RS  EF+ F+ E + E  A  Q R+G
Sbjct:   77 FVAAVFDVGLKNASPKALLTLMGNPATSSGLTTEHLKSHLQKYRLNYDRSRVEFLKFFDESVAES-AKAQKRKG 149

[Close]

BLAST of NO17G02310 vs. NCBI_GenBank
Match: GAX14324.1 (hypothetical protein FisN_1Hh524 [Fistulifera solaris])

HSP 1 Score: 66.6 bits (161), Expect = 4.200e-7
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0

Query:  193 EFAGAVFQIGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFY 249
            +F  AVF +GLK SSP  +++HMP    I +E VKSHLQKYR++  +S  EFMT Y
Sbjct:  180 DFVAAVFDVGLKHSSPSAILEHMPAHEQINSERVKSHLQKYRINRNKSKREFMTAY 235

The following BLAST results are available for this feature:

BLAST of NO17G02310 vs. NCBI_GenBank

BLAST of NO17G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9


Match Name	E-value	Identity	Description
EWM26518.1	4.400e-20	61.63	conserved unknown protein [Nannochloropsis gaditan...	[more]
CBJ29351.1	7.700e-9	56.14	conserved unknown protein [Ectocarpus siliculosus]	[more]
OEU21412.1	1.500e-7	49.18	hypothetical protein FRACYDRAFT_235035 [Fragilario...	[more]
EWM27574.1	1.900e-7	32.80	two-component response regulator arr12 [Nannochlor...	[more]
XP_002181659.1	2.500e-7	46.77	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
GAX20002.1	3.300e-7	53.57	hypothetical protein FisN_1Lh524 [Fistulifera sola...	[more]
GAX97031.1	3.300e-7	51.67	Hypothetical protein PINS_004913 [Pythium insidios...	[more]
OQR81572.1	4.200e-7	51.35	hypothetical protein THRCLA_11609 [Thraustotheca c...	[more]
GAX14324.1	4.200e-7	53.57	hypothetical protein FisN_1Hh524 [Fistulifera sola...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL156	nonsL156	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR053	ncniR053	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR028	ngnoR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO17G02310.1	NO17G02310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674027	gene_9295	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO17G02310.1	NO17G02310.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO17G02310 ID=NO17G02310|Name=NO17G02310|organism=Nannochloropsis oceanica|type=gene|length=4409bp
ATGCAGGACCCTCATATGTCAGGGTCAGAAAGGGGATTTGGGGATTCAGG
GCAAGATCATGATTTATATGGCCATGGTGGGTTCGGACAGgtaggtgctc
cagatgcacaggcatggcgaccctcagaagttctctctgggaccccctat
ttcctttgggactgccaggacctggaatctaatcattcggtcatttaacg
atgcccttggattttctacactcacagGCTCGTGTGGAGAGCTCGACGAG
GGAATCAGgtatgcaggaggggcgctggaaaggttacggcatgggtcgtg
tgcgcgcgtttcctgttctgacggccccccacattttatctaactgattg
cacacatatatacatagACACAGCTGCTCCCGGAATGAAGGGTGTAGAGG
AAGCAGAGGAAGAGGAGGAGGACGAGGGCTATCGTTGGAAAGAAGAGAAG
CCACCAGACGGCAGAAGCAGCGGCGGGGGCTGGCCCGGGGGGGAGGGAGG
CGGCGGAGGAGGGGACAACAGTTCAGGAAGCAGTTTCCCCGTCAGTCGCG
AGTCTAGCGGAAGCGAGAGTCAGCTGCCTTTGACGCGCGGGAAGGGGCGA
CCGCGGAAACGGACTCTAGAAGgtgcgtgcatgctgtgtcctatcagtat
ttccttgaaagcgcgtgtgtgcatctctgtggattccttagtttgtaggt
ttcaatattcttcactctggtcatccccacaattgcaaacatgtacagGT
GGTGGTAGAGGTGGCGAGGCGTATGAAGGGCACTACCTGCATCGATCTTC
AGGCGCAGACGAGGAAGCCTCGCCTGGGCGTCCCAGgtgggtagggagcg
agggcaggaagttaggagggagtgaggggggggaagcataggtggtcagg
gcgtcggtatgcatgtatttcttcatagcttctcatgattgatgctgcgg
gagagagggagaaaagatacagagagcgaaatttggtcttcctttgatcc
atgcaaagattgcccgataatgaaggcgccgatcctcctccctccatgcc
tctctcctcatcatcctcctcccgaccaatactatttcctgcagGCGACA
GGGCGTGCTCACACGAGGAGCTAAGGCTGGTCATGGAAGCGACCCTGGAT
CCGCTGCCTTCGAGGAGGCACTTATGGCTTTGAATgtacgccctctccct
ttcctcctttcctccccccctctctcttcttgtcatgagcctcacccgtc
cctctgcacactctctctctcctccattacgaatgcctacagCTAACGAG
CAAACAGGAAGAGGAATTTGCAGGTGCGGTGTTTCAGATCGGGCTCAAGC
GATCTTCCCCAAGGgtaggttggtttggtctgtatgtgggctgtgtgggt
tggcggcactctgcattcttctcttcttgtatgacgcatggggatggcat
cgttgaagagggagatcaaattgtcgacttccctgcctcaccttctttga
tacctgatctccagacggtcctgtgcagacccctcaaccctcacaccctc
catccatccctcccgccctccattcctcttcttccgaatagatctagtca
acttcactcctttaccctccttctctttcccaacccccaactcccccccc
cccgccctcgcaacccattctcacattgtcctactctccctccctccctc
cctagGTGCTGATGGACCATATGCCAGACACGTCAACCATCACCACCGAA
CACGTGAAAAGCCACCTTCAGAAATATCGCCTCCACCACCAGCGgtacgt
acgtccttcctttcctccctccccctctttctcttcctttctgctaccct
ccctcacactcaggatcaacctctttttgggcctcattcaattacgcgat
cttcggctgtggcggtaagttctcacgtgcaattatgacccctccctccc
tccctcctagGTCGAACGAGGAGTTCATGACGTTCTATCGCGAGCATATC
AGAGAACCATTCGCGAGCTTTCAGGCCCGAAGGGGCTGGTTGGACGTGAG
gtactgaatgagggagggagggagggagggagggatggagagccacaaag
gctctttatgggcctaaatgtgtattgaaggtatacgggaattgaaggaa
agtaagcgagaaaggggaaagggaggggaggaggggagtgcgggccgggg
gcgacatgatgggaggactcagatttgcgatatcttcctccctcttccac
catatctcaatcccttctgttctttcttttctttttcctcttcacctctc
cccctttattccctcggtttcttatccctccctcggtgtctaattcttgt
tctctttcacttaatctctctctttctcactctctcggtgtttctcgcat
ttcccactttcaaaaaatagcagCTCCCAACGCGACGGCGAAGAAGAAGA
AGAAGAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGGAACTAGAAGCATGA
AGGACGAGGGCGGGGAGGAAGACGAGGAAGTGGGCGAGCAAGAGTGGGTG
GAAAGGGAGGAGGAAGTGCCCTGGGAGGGACGGAGGGAGGTGAGACCTGG
ATCGGGCCAGGCAGTCGCGCAGAAAGgtaaggagggagggagggagggag
ggcggaagggcggatgggaagaaaagagtcgatgggtaatattggttttc
gaataagttcctcatgtccctgccttcctccctccccttcctcccgcagC
ATCCCTCTCCGCAGAGGTGAGGTCTGTCACCACCCACCTGTTCCGCACTC
AGCTTCAATTACATGAGCAGATGCATGCCTATATCACCCAGCAGATGATG
CACCACGCCGCCCTATTGGAGGAGgtgggggggaggaagggaaggaggaa
gggatgcggggacacgagggagggtggggagagttttgggacgaacagTT
GCAATTTGAAATGTTGGCGGAAGAAGAAGGTGGTGATAAATGGAAAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGTCGAGAAGGAGTTGGTCG
TCGCCCTCCCCTTTCGTGGGCCCCTCCACGCCATTGCTTCCTCTGCCGTT
CGTGCCGTCTTCCCCGAGGGCAGCCGTGGCCTGGGCAGCGCGAGGAGGAG
GAGGAGGAGGAGGAAGAGGAGGAGGAGGGGGAGGAGCAGGGAGAGGAGCA
GGGGGAGGAGCAGGGGGCCTTACGCCCGTCCCCTCTTGGTCTGCATTTTC
ACCCTTTCGGGATCCGAGCGCTGCTTGTGCTGGTGCTGGTGTTGCTACTG
CTGCCTCCTTTGCGGCGAAACGACGGCCACAAACAGCGCCTTCGCTCCCT
TCTTCCTCTTCTTTCCCTTCACTTTCTTCCCGACTAACAGTACCTCCGGC
AAGGGGGAATAAGGGAGGGAGATTTAGAGGGGCCAGCAAATCACCGCAAC
GACGACGAGGAGGAGGGGGGGGAAACAGAGGAGGAGGAGGGGGAGACAAC
ATAGGAGGAGGAGAGAAAGGCTCAGGAGGAGGAGGAGGACAAGGAGGACG
AGGAGATGAAGAAGAAGAGAAAGAAGGTACTTCCTTCCTCTCTTCTATAA
CCCTGCCGAGTGGTGTAGTCATCCAGCAGCCAGGAGGTGGAGGCGCGGTC
ACTATTCACATTCCACACGCCCCCGGCTTTTCACTGGGGGAGCAATTGGC
AGGTCTAGGAGGTCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGTGAAAGCACAATTAACATCCCGACAATCACAACGCAAAAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCAAGCACGGGCGCAAAC
CAATCCACCGCAAGTTATGCTTTCAGAAGCAGCAGCAGGAGGAGGAGGAG
GAGGAGGAAGAGAGGGAGGAAAAGGAGGAAAAGGGGAATGTGAGTCTGAT
TCAATGTTCTCAGTGAATCTTGATTTGAGTTGCCATGGTTCCCTCCATCT
TGACTCACCATCTCCGGAACGTGGAGGAGGAGTGGGGGCGGAGGAGGAGA
AGTGGGGGGCGGAGGAGGTGAAGGCGGGCAAAAGGGGATGGAAGGTCCGG
TCGCCATCCCGATCAACGTCAATGTGGAGTCAGTGGGAGGAAGGGAGGGA
GGAGGGGGTGCCGGGAGTGGGGGAAGCGAGGGTTGGACGACGAGTTTCTT
CAGCCCCCGGAGCGGAGAGTTGCGTCATTATCCGTTTGGGATATCTCCGA
ATTCGACTGATTCCGGTCGAGGTGGGGGAAGGAGGGGGGGAGGGGGGGAA
GGGGAGGAGCGAGGAATGTGTTGGGCTGGGGCGCATGGGCCAAGTGTGGT
TGGATGTGTGTGTCACCGGCAGCAGCAGCAGCAGGAGAGAGAAGAGGCAG
GGCGAATAG

protein sequence of NO17G02310.1

>NO17G02310.1-protein ID=NO17G02310.1-protein|Name=NO17G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=865bp
MQDPHMSGSERGFGDSGQDHDLYGHGGFGQARVESSTRESDTAAPGMKGV
EEAEEEEEDEGYRWKEEKPPDGRSSGGGWPGGEGGGGGGDNSSGSSFPVS
RESSGSESQLPLTRGKGRPRKRTLEGGGRGGEAYEGHYLHRSSGADEEAS
PGRPRRQGVLTRGAKAGHGSDPGSAAFEEALMALNLTSKQEEEFAGAVFQ
IGLKRSSPRVLMDHMPDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFYRE
HIREPFASFQARRGWLDVSSQRDGEEEEEEEGGGGGGEGGTRSMKDEGGE
EDEEVGEQEWVEREEEVPWEGRREVRPGSGQAVAQKASLSAEVRSVTTHL
FRTQLQLHEQMHAYITQQMMHHAALLEELQFEMLAEEEGGDKWKGGGGGG
GGGGGRSRRSWSSPSPFVGPSTPLLPLPFVPSSPRAAVAWAARGGGGGGG
RGGGGGGAGRGAGGGAGGLTPVPSWSAFSPFRDPSAACAGAGVATAASFA
AKRRPQTAPSLPSSSSFPSLSSRLTVPPARGNKGGRFRGASKSPQRRRGG
GGGNRGGGGGDNIGGGEKGSGGGGGQGGRGDEEEEKEGTSFLSSITLPSG
VVIQQPGGGGAVTIHIPHAPGFSLGEQLAGLGGLGGGGGGGGGGGGGGGE
STINIPTITTQKQQQQQQQQQLLQARAQTNPPQVMLSEAAAGGGGGGGRE
GGKGGKGECESDSMFSVNLDLSCHGSLHLDSPSPERGGGVGAEEEKWGAE
EVKAGKRGWKVRSPSRSTSMWSQWEEGREEGVPGVGEARVGRRVSSAPGA
ESCVIIRLGYLRIRLIPVEVGEGGGEGGKGRSEECVGLGRMGQVWLDVCV
TGSSSSRREKRQGE*

Synonyms

Publications