NO17G02300, NO17G02300 (gene) Nannochloropsis oceanica

Overview
NameNO17G02300
Unique NameNO17G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2859
Alignment locationchr17:672753..675611 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:672753..675611 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO17G02300 vs. NCBI_GenBank
Match: EWM24171.1 (hypothetical protein Naga_100296g3 [Nannochloropsis gaditana])

HSP 1 Score: 531.9 bits (1369), Expect = 3.900e-147
Identity = 413/1095 (37.72%), Postives = 520/1095 (47.49%), Query Frame = 0 
Query:    2 LEAEEKDKLAHEQATETEDDTRXXXXRRHRHLQDLAQIFFGT---AEDGKQKELEGSVARLYGSSSLQGSNLFIDQAQGPAIQSSDASNVTLGRPCFTQDTPSAANVTPSARFVESTSELGELVMWGACAFPSLE---GEEGGLPDVFLQNMSVEQVALTPYTDLNIGGQTEGVLSAQNGSCLRECEASFAPPRDWDPSYEPSTAAG-GLSGAKKKKPFPPGFTIIFSDGKDRGKSTATXXXXXXXESLSQPPSDVKFDEKTGMVNVKYPDDYKGDKIPSFQIPFGISFVIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---------------------------------------------------HAQAAGLINEKDVTEIKKLLPTGEQSEIPNEFYSLLPPLFPSSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLNKLKNDLSAPWENNRGKDAWMQPDWTFLAHFPLVPNAPIAQRTAQNKQVLKAAKAYQAYTEFLASNPGIALPSSAVLTREAGEDEVAIEGPTSASAQEPENIVEGEDGSATVAGIAVGEPNPAXXXXXXXXXXXXXXXXXXRVCPEGQAPLILYLDSGSTGANEECMTQQEDGQAAFYFTALSGGKSARTLTLPATEKITNVTSSPPXXXXXXXTETDASTIDTDLSEVSAIGSDFTLLQILDLGCQPPSNVLEVELRNELMPDVVCSRWSVPGWADTLEQTGMSVIL----------EGKEGEVVTARSV-----DPSVPV---------------------------------------------------------------------------DEGGRE----VGVEGGVVRRRQFVVPRERRRLQVEEGXSDKEPVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAPITLSDASGGSFVSLVLISEPTSLDETVIFDVYLPELSRLNGTVGLPSRPPSSEEESQLKGE--KVAVDATILADGSERPQVXXXXXXXXXXXXXXXXI----GALLAVAFVAGGVAMYRKRQ 939
            LE  E+++  +    + E           R +QDLA IFFG       GK   +EGSVARLYG S+ QG NLF+D A+ PA+ + DASN+TLGRPCF  D P+     P ARFVE+T+  G+LV+WGACAFPS     GE GG PDVF+ +M  E+VALTPYT++++GGQT G++ AQNGSCLR+CEAS APP +WDPS  P  A   G +GAK    FP G TIIFSDGK        XXXXXXX    QPPSDV FDE+TGM+NVKYPD+YKG+KIPSFQ+PFGI FVI XXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                   HA A+GL++E+D+ E+K LLP+G Q EIP E Y + PP                                      LL +L  D SAPWEN+RG+DAW++PDWTFL  FP++ N    Q +  NKQ LKAA+AYQAY +FLASNPG+ LP SA                 +      E  + G +  A   GIAVGEPNPA                  R CPEG+APL+LYLDSGS G +E C T     Q  FYF A SG  + RTL LP  +      S+P                            DFTLLQILDLGCQPP+N+LEVELRNE +PDVVC+RW++  WA TLE+ G SV L          + KEG+ + AR +     +P+ PV                                                                            E GRE    V  EGG  +RR  V     RR++  E   ++E                                                  LT P+ L + SG SF+S+V++S+P  L+E+ +F VYLP L +LNGTV LP+  PS  +  +++G+     ++A +L D +   Q                 +    GAL+AVA + G V  Y+ R+
Sbjct:  417 LEGGEEEEKRNSTDADVEGALSSQVDSTRRSVQDLATIFFGPPVGKTGGKVPPMEGSVARLYGQSTFQGINLFVDHAESPAVVTQDASNITLGRPCFMHDAPAQGEREPEARFVEATAASGDLVLWGACAFPSFSEAAGERGG-PDVFVADMGEERVALTPYTNISVGGQTHGIVPAQNGSCLRQCEASSAPPLNWDPSARPLAATSKGQNGAKL---FPSGITIIFSDGKGXXXXXXXXXXXXXXXXYPQPPSDVNFDEQTGMINVKYPDEYKGEKIPSFQLPFGIPFVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPDGSRRRSLLRGGRPNGPLTSLFDRFLGTFETLRLTHTPHPPPNIKRTDSPRDHSVHTDQKPLSSFPTATSPSEGPDAIFQHAAASGLVHEEDMEELKWLLPSGNQPEIPPEVYVVNPPFL-----------SIPPLGLVTVVGEEEEAGADGAEEKLLEQLYGDRSAPWENSRGEDAWLRPDWTFLDQFPVIGNVSAVQASGTNKQALKAARAYQAYLDFLASNPGVTLPFSA----------------GTIGGNGTEGGLSGPEAEAPSPGIAVGEPNPA-TPPSTTHEQNHSGNGLTRPCPEGEAPLVLYLDSGSLGEHEACQTDDTGSQDGFYFRATSGKHAVRTLPLPHMDP----ASAP---------------------------VDFTLLQILDLGCQPPTNILEVELRNEKIPDVVCARWTLTDWAGTLEKAGTSVTLATEKKTEEDGKEKEGKGLPARGIAVGEFNPAAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGNEDLVEHAMGPGIRVPVXXXXXXXXXXXALSEMGREKKGGVKPEGG-TQRRDGVEAGRARRVEAREPPVEEE---------------GKPKITVSDVEEELLSSLNTSLTSTTRPTSSSTTLLTVPLELGEPSGNSFISMVILSDPNMLNESAVFSVYLPGLQQLNGTVPLPAHVPSLIKTEEMEGKIGTGGLEAQVLNDATTDLQTHTEGERAKPGTSLEATVGAVTGALVAVACIFGAVMYYKSRR 1432
The following BLAST results are available for this feature:
BLAST of NO17G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24171.13.900e-14737.72hypothetical protein Naga_100296g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02300.1NO17G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02300.1NO17G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02300 ID=NO17G02300|Name=NO17G02300|organism=Nannochloropsis oceanica|type=gene|length=2859bp
ATGCTCGAGGCCGAGGAGAAGGACAAGCTGGCGCATGAGCAGGCAACGGA
GACTGAAGATGACACCAGGCGCCGCCGTGGTCGTCGTCACCGTCACCTGC
AAGATCTGGCTCAGATCTTTTTTGGCACCGCTGAGGACGGGAAACAGAAA
GAGCTGGAGGGGTCTGTGGCCCGTTTGTACGGAAGCTCGAGTTTGCAGGG
TTCTAATTTGTTCATAGATCAAGCACAGGGACCGGCGATTCAGAGCTCGG
ATGCCTCAAATGTCACTTTGGGGAGGCCTTGCTTCACCCAAGACACGCCT
TCTGCAGCAAATGTGACGCCTTCCGCACGCTTTGTGGAATCCACGTCAGA
GCTCGGAGAGCTGGTCATGTGGGGGGCATGTGCCTTCCCCTCCCTCGAGG
GGGAGGAAGGAGGGCTACCAGACGTGTTCCTGCAGAATATGAGCGTGGAG
CAGGTGGCATTGACGCCGTACACAGATTTGAATATCGGTGGTCAGACAGA
AGGGGTGCTCTCCGCACAGAACGGCAGCTGCCTCCGTGAGTGCGAGGCCT
CTTTTGCTCCCCCCCGGGACTGGGATCCTTCCTACGAGCCGTCCACTGCT
GCGGGAGGATTAAGTGGAGCCAAAAAGAAGAAGCCCTTCCCCCCAGGATT
TACCATCATCTTCTCCGACGGCAAGGATCGAGGAAAATCAACGGCAACGA
CTTTTTTCCCCCCGCCTCCTGAGTCGCTGTCCCAGCCGCCGTCGGACGTG
AAATTTGATGAAAAGACGGGGATGGTCAATGTCAAATACCCGGATGACTA
CAAGGGAGATAAAATCCCCTCCTTCCAGATTCCTTTTGGTATTTCGTTTG
TCATTCCTTCGTCCTCCAGCGGTGAGAAGAAGAGTAGCAATGGGGGAGGT
AGTTCTGGTGGTGAGAAGCGGGCCCTGCTCCGAGGAGGGAAGGCTACAAC
CACTCCTTTTCCGGCTAGAACCATCGCCACGGCCCCGATGACGACGAGGG
AAACGACCACAATGAAAGAGGAAGAGCTTCTTGTCCATGCACAAGCCGCC
GGTTTGATCAACGAGAAGGATGTGACTGAAATTAAGAAACTGTTGCCTAC
AGGGGAGCAGTCGGAGATCCCTAATGAATTCTACAGCCTACTCCCTCCCC
TCTTCCCATCGTCTAAATCCGCATCACCCACGCAGTCGGACACCACGAGC
AGCGAGGACAAGAAGAAGAAGGAGACAGCGGAAGGGACGGACGAGGAAGA
GGAGGATGAAGGCCTGCTGAACAAATTGAAAAATGACTTGTCGGCCCCGT
GGGAGAACAACAGGGGAAAGGATGCTTGGATGCAGCCGGACTGGACATTC
CTCGCTCATTTCCCCCTTGTCCCCAATGCCCCCATTGCTCAACGCACCGC
GCAAAACAAGCAGGTTTTGAAGGCCGCGAAGGCCTATCAGGCCTACACGG
AGTTTTTGGCTTCCAATCCGGGCATAGCCCTGCCTTCCTCGGCGGTGTTG
ACGAGAGAAGCGGGGGAGGATGAGGTCGCGATTGAAGGGCCAACGAGTGC
GTCGGCGCAGGAGCCGGAGAATATCGTCGAGGGAGAGGACGGTTCAGCAA
CTGTAGCGGGCATTGCTGTCGGGGAGCCCAACCCTGCTGCTCCCATTCCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCGTCGTGTCTG
TCCTGAAGGGCAAGCACCCTTGATTCTCTACCTTGACTCGGGCTCGACAG
GTGCTAATGAGGAATGTATGACCCAGCAAGAAGACGGCCAGGCCGCATTT
TACTTCACGGCTCTGTCGGGGGGTAAGAGCGCCCGAACCCTCACCTTGCC
TGCGACGGAGAAAATCACGAACGTGACATCTTCTCCTCCTCCTTCTTCTT
CTCCTTCAACTACTGAGACGGACGCAAGCACAATCGACACAGATCTCTCG
GAGGTCTCGGCTATTGGCTCCGATTTCACCCTGCTGCAGATCCTGGACTT
AGGGTGCCAGCCCCCAAGCAACGTCCTGGAAGTAGAGCTCCGTAATGAGC
TGATGCCTGACGTGGTATGCTCTCGGTGGTCTGTGCCAGGGTGGGCGGAT
ACGTTGGAGCAGACTGGGATGAGTGTGATTCTGGAAGGGAAGGAAGGGGA
GGTTGTGACTGCCCGGTCAGTGGACCCCTCGGTGCCGGTGGACGAGGGAG
GGAGGGAGGTAGGGGTGGAGGGAGGGGTGGTACGCCGTCGCCAATTCGTG
GTGCCCCGGGAACGGCGGAGACTGCAGGTAGAGGAAGGAGGGAGTGATAA
AGAGCCGGTAGCTCCGACGGTGGCGACGACGAAGACTGTCATTGGTGATG
TAGATTCGAAGCAGGAGGAGGAGAAGAAGGAGGAAGGAGAGGGGGAGGTG
TCTTCCAGCCCTGCAAGCAGCAGCAGCAGTAGCAGCACCACCATCACGAC
CTTTCTCACGGCGCCCATTACACTGAGCGACGCTTCCGGCGGATCCTTCG
TCTCCCTTGTGCTCATATCTGAGCCTACCTCCTTGGACGAAACCGTTATC
TTCGATGTCTACCTCCCCGAGCTCTCCCGCCTGAATGGGACCGTCGGCCT
TCCCTCTCGACCTCCCTCGTCTGAGGAGGAGTCACAGCTCAAGGGCGAGA
AGGTTGCAGTGGATGCTACAATTCTGGCTGATGGCTCGGAGAGGCCGCAG
GTGCAGCAGGGCGGGGGGGGAGGAGGGGGAGGAAAAGCGTTGGGAGGGGT
GATAGGTGCGTTGCTAGCGGTGGCGTTTGTTGCGGGAGGGGTGGCGATGT
ACCGTAAACGGCAACTTGCGCGGCACGGAATGGTGATACGTAATAGTGAG
GCTTATTAG
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protein sequence of NO17G02300.1

>NO17G02300.1-protein ID=NO17G02300.1-protein|Name=NO17G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=953bp
MLEAEEKDKLAHEQATETEDDTRRRRGRRHRHLQDLAQIFFGTAEDGKQK
ELEGSVARLYGSSSLQGSNLFIDQAQGPAIQSSDASNVTLGRPCFTQDTP
SAANVTPSARFVESTSELGELVMWGACAFPSLEGEEGGLPDVFLQNMSVE
QVALTPYTDLNIGGQTEGVLSAQNGSCLRECEASFAPPRDWDPSYEPSTA
AGGLSGAKKKKPFPPGFTIIFSDGKDRGKSTATTFFPPPPESLSQPPSDV
KFDEKTGMVNVKYPDDYKGDKIPSFQIPFGISFVIPSSSSGEKKSSNGGG
SSGGEKRALLRGGKATTTPFPARTIATAPMTTRETTTMKEEELLVHAQAA
GLINEKDVTEIKKLLPTGEQSEIPNEFYSLLPPLFPSSKSASPTQSDTTS
SEDKKKKETAEGTDEEEEDEGLLNKLKNDLSAPWENNRGKDAWMQPDWTF
LAHFPLVPNAPIAQRTAQNKQVLKAAKAYQAYTEFLASNPGIALPSSAVL
TREAGEDEVAIEGPTSASAQEPENIVEGEDGSATVAGIAVGEPNPAAPIP
SSSSSSSSSSNSSRRVCPEGQAPLILYLDSGSTGANEECMTQQEDGQAAF
YFTALSGGKSARTLTLPATEKITNVTSSPPPSSSPSTTETDASTIDTDLS
EVSAIGSDFTLLQILDLGCQPPSNVLEVELRNELMPDVVCSRWSVPGWAD
TLEQTGMSVILEGKEGEVVTARSVDPSVPVDEGGREVGVEGGVVRRRQFV
VPRERRRLQVEEGGSDKEPVAPTVATTKTVIGDVDSKQEEEKKEEGEGEV
SSSPASSSSSSSTTITTFLTAPITLSDASGGSFVSLVLISEPTSLDETVI
FDVYLPELSRLNGTVGLPSRPPSSEEESQLKGEKVAVDATILADGSERPQ
VQQGGGGGGGGKALGGVIGALLAVAFVAGGVAMYRKRQLARHGMVIRNSE
AY*
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Synonyms
Publications