NO17G02290, NO17G02290 (gene) Nannochloropsis oceanica

Overview
NameNO17G02290
Unique NameNO17G02290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1577
Alignment locationchr17:671138..672714 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:671138..672714 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO17G02290 vs. NCBI_GenBank
Match: EWM24171.1 (hypothetical protein Naga_100296g3 [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 1.900e-96
Identity = 218/437 (49.89%), Postives = 265/437 (60.64%), Query Frame = 0 
Query:    1 MRLIRNTRTFFFATLLGTALLVKADHNVSENDDGILETAEIEPQRGGPDPAMEERYRGSDGSGGFPEIEQDSNTLSVSVPGAFKVTFKNCAATAGMNRQSDLGPVFERLKGCPTGMVNLLSQAQGGPAVYTWSSLAPASDIGNLLLYGPTSSFSSISSGSGSSREEKKFEKAG-LFGVGKVKPPLPPSPSVVIELSGDGPLRTGPWAASNLAFRPSPTQNLTSPPFLVSEGDADLREVLFTGFNETIFRVVDENVLQVVEGGFLANGVGEEEG--GLVEVEGGTMYCHRCYFIENTGMKIITASGPESLVGLSFSRFINNVAVGALVEAQAGXXXXXXXXXXXXXXXXXXAVLALTNGSVFLGQNSLFKSNVGGDLLADDSHYRVDKTLFTASRMTWLEEGL----------------GEGEEKG--EGGSAEKLEN 417
            MRL  +  +   A +LG  L+V AD +  +     L  +EI P RGG DPAMEERYR     GG PE+  DSNTLS++VPGAFK+T KNCAATAG++   DL  V   LKGCPTGMV LLS+ QGGPAVY+WS  +  SD+GNLL+ GP  S +    G   S+++K   K G               P V IEL G+GP RTGPWAASN+AF+PS TQ L   PF  ++GDAD+REV F GFN T+FRV +  VL V  G FLANG  +  G   LV+V GG  YCHRC+F EN G+K+I  +GP++LVGLSFSRF+ N A GALVEA  G                  A+L L   SVF+GQNSLFKSN GGDL+A D+HYRVDK+ FT S +   E G                 GEGE +G  EGG  E+  N
Sbjct:    1 MRLF-SRHSLVLAVVLGALLVVGAD-DYEKQIIKDLSDSEI-PHRGGDDPAMEERYR-----GGAPEVTHDSNTLSLAVPGAFKLTIKNCAATAGIDGADDLNTVIATLKGCPTGMVTLLSEEQGGPAVYSWSKPSLGSDVGNLLILGP--SPTGKEKGMRLSKKDKAARKEGDXXXXXXXXXXXXXXPLVTIELGGEGPFRTGPWAASNVAFQPSSTQPLVGVPFQTTDGDADMREVSFEGFNGTLFRVTEATVLNVEAGTFLANGGKDATGDNALVDVVGGGFYCHRCHFEENAGVKLIRTTGPDALVGLSFSRFLQNQATGALVEAVDGSRGGFASTSFVNNTVRNGAILNLREHSVFVGQNSLFKSNAGGDLMAHDAHYRVDKSWFTQSTLGTPEVGNRAEEILLKPVGFTPVDGEGEVEGGLEGGEEEEKRN 427
The following BLAST results are available for this feature:
BLAST of NO17G02290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24171.11.900e-9649.89hypothetical protein Naga_100296g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02290.1NO17G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674025gene_9293Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02290.1NO17G02290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02290 ID=NO17G02290|Name=NO17G02290|organism=Nannochloropsis oceanica|type=gene|length=1577bp
ATGCGTCTTATACGTAATACACGCACCTTCTTCTTTGCGACCCTCCTTGG
GACGGCCCTGCTCGTGAAGGCCGATCACAATGTTTCGGAAAATGATGATG
GAATCTTGGAGACGGCAGAGATAGAGCCCCAACGAGGAGGGCCCGACCCG
GCCATGGAAGAGgtatgtgcgcggagatagtgtcgctgtccttgatgaaa
gaaaggaggcgttggggaaatgcgaagatgctctcatatcctctcagtca
tctttcccatttccccctccaatttccatgcatgcactgtctacagatgt
tcctatcacgtaagaccagaccggtgaatacctcacgcttgtcaagaccc
ttgaaccccccctctcctaatgcttaccatcccccattcactcgtccctc
tcccttccctcccttccatccccctattttcccgcagCGTTACCGCGGCA
GCGATGGCAGCGGCGGATTTCCTGAGATCGAACAGGACAGCAACACACTC
TCCGTCTCCGTGCCTGGTGCGTTTAAGGTTACCTTCAAGAATTGCGCGGC
AACCGCGGGAATGAACAGGCAAAGTGACCTGGGCCCCGTTTTTGAACGCT
TAAAAGGCTGTCCGACGGGGATGGTGAACCTTCTCTCCCAGGCGCAAGGA
GGACCGGCTGTGTACACCTGGAGTTCACTTGCTCCTGCTTCGGACATCGG
AAACCTCCTCTTGTATGGACCCACCAGCAGTTTTAGCAGTATCAGCAGCG
GCAGCGGCAGTAGCCGCGAGGAGAAGAAATTCGAGAAGGCGGGGCTTTTT
GGGGTGGGGAAGGTAAAGCCTCCCCTGCCTCCTTCTCCCTCCGTTGTGAT
CGAGCTTTCCGGCGACGGGCCCTTGCGGACGGGGCCGTGGGCGGCGAGTA
ATCTGGCCTTCCGCCCCTCCCCCACCCAGAACTTGACCAGCCCGCCTTTT
TTGGTGTCCGAGGGAGATGCGGATTTGCGCGAGGTGTTATTTACAGGTTT
CAATGAGACGATTTTTAGAGTCGTGGACGAAAACGTGCTCCAGGTAGTGG
AGGGCGGGTTTCTGGCAAATGGTGTGGGAGAGGAGGAGGGTGGGTTGGTG
GAGGTGGAGGGAGGGACGATGTATTGCCATCGGTGTTATTTTATTGAGAA
CACGGGGATGAAGATAATCACGGCTTCGGGGCCTGAATCTTTGGTGGGTT
TGAGCTTTTCGCGCTTTATTAATAACGTGGCTGTGGGCGCCTTGGTGGAG
GCCCAGGCCGGGAGCAGGGGTGGGTTTGCCTCCACCTCTTTTATCAATAA
CACAGTAATAAACGGGGCTGTCCTGGCGTTGACGAACGGCTCAGTGTTTC
TCGGACAGAACTCCCTGTTTAAATCAAATGTCGGTGGAGATTTATTGGCC
GATGACTCGCACTATCGCGTGGATAAAACTCTGTTTACTGCATCGCGCAT
GACCTGGTTAGAGGAGGGCTTGGGGGAGGGAGAGGAAAAAGGGGAGGGAG
GTTCGGCGGAGAAGCTGGAAAATGTGGGGGGGGGGAGGGGAAGGAGGAGG
AAGAGGTGGAAGAGGAGCCGTATTTGA
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protein sequence of NO17G02290.1

>NO17G02290.1-protein ID=NO17G02290.1-protein|Name=NO17G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MRLIRNTRTFFFATLLGTALLVKADHNVSENDDGILETAEIEPQRGGPDP
AMEERYRGSDGSGGFPEIEQDSNTLSVSVPGAFKVTFKNCAATAGMNRQS
DLGPVFERLKGCPTGMVNLLSQAQGGPAVYTWSSLAPASDIGNLLLYGPT
SSFSSISSGSGSSREEKKFEKAGLFGVGKVKPPLPPSPSVVIELSGDGPL
RTGPWAASNLAFRPSPTQNLTSPPFLVSEGDADLREVLFTGFNETIFRVV
DENVLQVVEGGFLANGVGEEEGGLVEVEGGTMYCHRCYFIENTGMKIITA
SGPESLVGLSFSRFINNVAVGALVEAQAGSRGGFASTSFINNTVINGAVL
ALTNGSVFLGQNSLFKSNVGGDLLADDSHYRVDKTLFTASRMTWLEEGLG
EGEEKGEGGSAEKLENVGGGRGRRRKRWKRSRI*
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Synonyms
Publications