NO17G02140, NO17G02140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G02140 vs. NCBI_GenBank
Match: EWM24196.1 (rna binding s1 [Nannochloropsis gaditana]) HSP 1 Score: 424.5 bits (1090), Expect = 6.000e-115 Identity = 261/466 (56.01%), Postives = 286/466 (61.37%), Query Frame = 0 Query: 1 MPVRRMVILSLASLCLWRGLSPAAAFLSARVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYFAVIDEMKVTELKEHLRRLKKPVSGTKALLQERLKEALIETPVQLSSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRA-ARPAA-----TRGYGDDDEAQYQRGDNSRGGSGYNYRNEGRGAGGRYTEGGNTWRADEEEWVPATEDEVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLAAPEGFRISLLPEGERSEEVGSFGGEEGREEVVERNQKAFSVRAEGGEGGREGGWAEGGGWDAKREEAKWAPTKVFIRGLPFSLTEEDVEKMMSKIG 461 MPV RM +L+L+SLCLWRGL A+AFL+AR PS EYFAVIDEMKVTELKEHLRRLKKPVSGTK +LQERLKEAL ETPVQLSSI+ G A A P +RGY +D++A Q WRADEE W A+E+ VE+GQEMEAEVMSFSDLGITVRLDG+YRGLIYEDELDYQ R+GLRVGDRC VYVQKVRRDGKVD SFRK+GTFPKLQDGRQVV DALLAS DGSLPLGD+S+SEEVVA LGISKSQFKAAVGMLYK RQ+ APE +RI+L+PE ER E + AF VR +G EGG G G WD KREEAKWAPTKVFIRGLPFSLTEEDV KMMSKIG Sbjct: 1 MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPS-----FAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQ--------------XXXXXXXXXXXXXXXXWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEXXXXXXXXXXXXXSMPAFQVRPDGEEGG--WGTRMEGNWDQKREEAKWAPTKVFIRGLPFSLTEEDVHKMMSKIG 445
BLAST of NO17G02140 vs. NCBI_GenBank
Match: XP_005855755.1 (rna binding s1 domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20596.1 rna binding s1 domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 359.8 bits (922), Expect = 1.800e-95 Identity = 222/397 (55.92%), Postives = 245/397 (61.71%), Query Frame = 0 Query: 1 MPVRRMVILSLASLCLWRGLSPAAAFLSARVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYFAVIDEMKVTELKEHLRRLKKPVSGTKALLQERLKEALIETPVQLSSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRA-ARPAA-----TRGYGDDDEAQYQRGDNSRGGSGYNYRNEGRGAGGRYTEGGNTWRADEEEWVPATEDEVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLAAPEGFRISLLPEGERSEEVGSFGGEEG 392 MPV RM +L+L+SLCLWRGL A+AFL+AR PS EYFAVIDEMKVTELKEHLRRLKKPVSGTK +LQERLKEAL ETPVQLSSI+ G A A P +RGY +D++A Q WRADEE W A+E+ VE+GQEMEAEVMSFSDLGITVRLDG+YRGLIYEDELDYQ R+GLRVGDRC VYVQKVRRDGKVD SFRK+GTFPKLQDGRQVV DALLAS DGSLPLGD+S+SEEVVA LGISKSQFKAAVGMLYK RQ+ APE +RI+L+PE ER E G GGEEG Sbjct: 1 MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPS-----FAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQ--------------XXXXXXXXXXXXXXXXWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGE-GEEGGEEG 377
BLAST of NO17G02140 vs. NCBI_GenBank
Match: OQY32499.1 (hypothetical protein B6241_10915 [Spirochaetaceae bacterium 4572_59]) HSP 1 Score: 107.5 bits (267), Expect = 1.600e-19 Identity = 58/145 (40.00%), Postives = 88/145 (60.69%), Query Frame = 0 Query: 223 EEWVPATEDEVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLAAPE 368 +E+ ++ Q++E V +++ GI V LD KY+GL+Y +E+ + L +GD+C Y++K+R DG +DAS R+ G D R V+L AL A+ G LPL DKSN EE+ TL +SK FK VG LY+E++++ E Sbjct: 138 DEFFEEDTSALKENQKVECLVFGYNEAGIRVILDSKYKGLLYRNEVFEE-----LNIGDKCTAYIKKIREDGLIDASLRRQGFRESTDDARSVILRALKAA-GGYLPLYDKSNPEEIKRTLKMSKKIFKKTVGGLYREKKISMEE 276
BLAST of NO17G02140 vs. NCBI_GenBank
Match: WP_005487416.1 (hypothetical protein [Halanaerobium saccharolyticum] >CCU78066.1 hypothetical protein HSACCH_00376 [Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643]) HSP 1 Score: 102.8 bits (255), Expect = 4.000e-18 Identity = 55/130 (42.31%), Postives = 83/130 (63.85%), Query Frame = 0 Query: 232 EVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKER 362 E G +++ V F+DLG TV +D KY GL+YE+++ K + VGDR Y++K+R D K+D S RK G + +++D ++ +L A L ++ GSLPL D S+ E++ L ISK FK A+G LYKE+ Sbjct: 19 EFSQGDKVDILVYKFTDLGATVIIDDKYFGLVYENDI-----YKEITVGDRMKGYIKKIREDNKIDVSLRKIG-YGRIEDAKEKIL-ARLKAKGGSLPLNDDSSPEKIKKALQISKGSFKKAIGGLYKEK 141
BLAST of NO17G02140 vs. NCBI_GenBank
Match: PLX95722.1 (GntR family transcriptional regulator [Desulfuromonas sp.]) HSP 1 Score: 101.7 bits (252), Expect = 8.900e-18 Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0 Query: 230 EDEVEL--GQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLAAPEG 369 +DEV+L GQE++ + F+DLG V ++ ++ GLIY D+L G++ G+ YV +VR D VD + RK G L + RQVV +AL ++G LPL DKS+ EE+ LG+SK FK AVG LY+ER + +G Sbjct: 136 QDEVDLCPGQEVDVLIWQFTDLGAKVIINNRFGGLIYRDDLP-----AGVKRGETGKAYVMRVREDNLVDITLRKVGK-AGLDEARQVVFEAL--QQEGRLPLTDKSSPEEIEQLLGLSKKAFKRAVGTLYRERLIELADG 268
BLAST of NO17G02140 vs. NCBI_GenBank
Match: WP_014201042.1 (GntR family transcriptional regulator [Owenweeksia hongkongensis] >AEV31681.1 hypothetical protein Oweho_0667 [Owenweeksia hongkongensis DSM 17368]) HSP 1 Score: 101.3 bits (251), Expect = 1.200e-17 Identity = 59/150 (39.33%), Postives = 92/150 (61.33%), Query Frame = 0 Query: 223 EEWVPATEDEVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLA-APEGFRI 372 E ++ E++ QE++ V S S LG V ++ KY GL+YE+E+ K L++GD+ Y++++R D K+D S +K G + ++ QV+LD L S DG LPL DKS+ EE+ A L +SK FK A+G LY+E+Q+ +G R+ Sbjct: 132 ENFLEKENVELQPNQEVDLLVASQSPLGYNVIINQKYMGLVYENEV-----FKNLKLGDKPKGYIKQIREDNKIDVSLQKQG-YGNVEPNTQVILDK-LKSADGFLPLNDKSSPEEITAQLEMSKKTFKKAIGGLYREKQITIEDDGIRL 274
BLAST of NO17G02140 vs. NCBI_GenBank
Match: PUU90957.1 (hypothetical protein CI949_2146 [Halanaerobium sp.]) HSP 1 Score: 100.5 bits (249), Expect = 2.000e-17 Identity = 54/130 (41.54%), Postives = 83/130 (63.85%), Query Frame = 0 Query: 232 EVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKER 362 E G +++ V F+DLG TV ++ KY GL+YE+++ K + VGDR Y++K+R D K+D S RK G + +++D ++ +L A L ++ GSLPL D S+ E++ L ISK FK A+G LYKE+ Sbjct: 19 EFSEGDKVDILVYKFTDLGATVIINDKYFGLVYENDI-----YKEITVGDRLKGYIKKIREDNKIDVSLRKIG-YGRIEDAKEKIL-ARLKAKGGSLPLNDDSSPEKIKKALQISKGSFKKAIGGLYKEK 141
BLAST of NO17G02140 vs. NCBI_GenBank
Match: WP_072907672.1 (hypothetical protein [Malonomonas rubra] >SHJ12180.1 hypothetical protein SAMN02745165_01633 [Malonomonas rubra DSM 5091]) HSP 1 Score: 100.1 bits (248), Expect = 2.600e-17 Identity = 57/150 (38.00%), Postives = 95/150 (63.33%), Query Frame = 0 Query: 223 EEWVPATEDEVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLA-APEGFRI 372 E+++ + ++ G+E+E + +F+DLG V ++ Y GL+Y+DEL GL+ GD+ +V ++R D K+D + R+ G + D R+V+L+A LA +G LPL D S+ E++ LG+SK QFK AVG LYKE+++ + +G R+ Sbjct: 130 EKFLQSENIDLREGEEVELTIWAFTDLGAKVIINNSYEGLLYKDELP-----PGLKRGDQGVGFVARIREDQKIDITLRRPGA-AGIADAREVILEA-LAENEGFLPLHDGSSPEQIRTELGLSKKQFKKAVGGLYKEQRVTLSHKGIRL 272
BLAST of NO17G02140 vs. NCBI_GenBank
Match: WP_035072805.1 (RNA-binding protein [Anditalea andensis] >KEO74049.1 RNA-binding protein [Anditalea andensis]) HSP 1 Score: 99.8 bits (247), Expect = 3.400e-17 Identity = 58/142 (40.85%), Postives = 84/142 (59.15%), Query Frame = 0 Query: 236 GQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQLAAPEGFRISLLPEG 378 G E++A V +DLG V ++GK+ GLIY++E+ K + +GD+ Y++KVR DGK+D G K +G Q +LD L S+ LPL DKS+ EE+ LG+SK FK ++G LYK+R +I LLP+G Sbjct: 146 GDEVDALVFDQTDLGFKVLIEGKFEGLIYKNEI-----FKRIELGDKFKAYIKKVREDGKLDLIITAPGR-EKYDEGAQRILDTL--SKHSFLPLHDKSSPEEIKGVLGMSKKHFKQSIGQLYKDR--------KIILLPDG 271
BLAST of NO17G02140 vs. NCBI_GenBank
Match: WP_040096849.1 (hypothetical protein [Geoalkalibacter ferrihydriticus] >KIH78076.1 hypothetical protein GFER_05690 [Geoalkalibacter ferrihydriticus DSM 17813] >SDM30408.1 hypothetical protein SAMN05660860_02236 [Geoalkalibacter ferrihydriticus]) HSP 1 Score: 99.8 bits (247), Expect = 3.400e-17 Identity = 57/145 (39.31%), Postives = 91/145 (62.76%), Query Frame = 0 Query: 232 EVELGQEMEAEVMSFSDLGITVRLDGKYRGLIYEDELDYQTQRKGLRVGDRCPVYVQKVRRDGKVDASFRKYGTFPKLQDGRQVVLDALLASRDGSLPLGDKSNSEEVVATLGISKSQFKAAVGMLYKERQL-AAPEGFRISLLP 376 ++++G E++A + F+DLG+ V ++ + GL+Y DE+ R G++ G R YV+ +R DGKVD + R+ G +D R ++L+AL +R G LPL D+S+ +++ +LG+SK FK AVG LYKE + A EG R+ P Sbjct: 140 DLQIGDEVDALLWDFTDLGVKVIINDLFSGLLYRDEI-----RGGMKRGQRLKAYVRNIRDDGKVDVTLRRGGAQGARED-RDILLEAL--TRQGFLPLHDQSSPQDIRQSLGMSKKAFKKAVGGLYKEGLVELAAEGVRLKEPP 276 The following BLAST results are available for this feature:
BLAST of NO17G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G02140 ID=NO17G02140|Name=NO17G02140|organism=Nannochloropsis oceanica|type=gene|length=2494bpback to top protein sequence of NO17G02140.1 >NO17G02140.1-protein ID=NO17G02140.1-protein|Name=NO17G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bpback to top Synonyms
Publications
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