NO17G02050, NO17G02050 (gene) Nannochloropsis oceanica

Overview
NameNO17G02050
Unique NameNO17G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr17:592352..593182 +

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Properties
Property NameValue
DescriptionMitotic-spindle organizing protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:592352..593182 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0008274gamma-tubulin ring complex
GO:0005856cytoskeleton
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0033566gamma-tubulin complex localization
GO:0008150biological_process
Vocabulary: INTERPRO
TermDefinition
IPR022214MZT1
Homology
BLAST of NO17G02050 vs. NCBI_GenBank
Match: CEO98787.1 (hypothetical protein PBRA_006901 [Plasmodiophora brassicae])

HSP 1 Score: 71.6 bits (174), Expect = 1.400e-9
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:   11 DKEWQEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQEL 61
            D + +E L  +HEIS  LNTGLDR+TL+ILV+LCEAGVNPEALA+VV EL
Sbjct:   10 DAQAREALSVLHEISEALNTGLDRETLSILVSLCEAGVNPEALAMVVCEL 59          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_002116704.1 (hypothetical protein TRIADDRAFT_60747 [Trichoplax adhaerens] >EDV20763.1 hypothetical protein TRIADDRAFT_60747 [Trichoplax adhaerens])

HSP 1 Score: 69.7 bits (169), Expect = 5.300e-9
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0
Query:   16 EVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            E L  V EIS+LLNTGLDR+TL+I V LCEAG+NPEALA V+QELR
Sbjct:   27 ETLDIVQEISDLLNTGLDRKTLSICVQLCEAGINPEALAFVIQELR 72          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_024392953.1 (mitotic-spindle organizing protein 1-like [Physcomitrella patens] >PNR42151.1 hypothetical protein PHYPA_016980 [Physcomitrella patens])

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-8
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0
Query:   15 QEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            +E L  VH +SNLL TGLDRQTLA+L+ LCE GVNPEALA VV+ELR
Sbjct:   10 RESLDIVHMMSNLLGTGLDRQTLAVLIALCEHGVNPEALAAVVKELR 56          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_013410601.1 (mitotic-spindle organizing protein 1 [Lingula anatina])

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-8
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0
Query:   15 QEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            +E +  + EISNLLNTGLD +TLAI V+LCE+GVNPEALA V+QELR
Sbjct:   13 RETMDTLLEISNLLNTGLDAETLAICVSLCESGVNPEALATVIQELR 59          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_001432874.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK65477.1 unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    8 MKRDKEWQEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            M   +E QE L  +HE+S +LN GLDRQ LAILV++ E GVNPEALALVV E++
Sbjct:   15 MSEKEEAQETLEIIHEMSQILNCGLDRQQLAILVSMIENGVNPEALALVVNEMK 68          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: PNR43589.1 (hypothetical protein PHYPA_015970 [Physcomitrella patens])

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0
Query:   15 QEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            +E L  VH +SNLL TGLDR TLAILV LCE GVNPEALA VV+ELR
Sbjct:   18 RESLDTVHMMSNLLGTGLDRPTLAILVALCEHGVNPEALAAVVKELR 64          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_004364387.1 (hypothetical protein CAOG_01519 [Capsaspora owczarzaki ATCC 30864] >KJE90174.1 hypothetical protein CAOG_001519 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 66.2 bits (160), Expect = 5.900e-8
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:   12 KEWQEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            +E +E +  + E+S LL+TGLDR+TLAI V+LCE+GVNPEALA VV+ELR
Sbjct:    7 REAKETMDVLFEMSKLLDTGLDRETLAICVSLCESGVNPEALAAVVKELR 56          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: EXX50288.1 (hypothetical protein RirG_272230 [Rhizophagus irregularis DAOM 197198w] >PKC05257.1 hypothetical protein RhiirA5_361581 [Rhizophagus irregularis] >PKC69942.1 hypothetical protein RhiirA1_414943 [Rhizophagus irregularis] >PKK75816.1 hypothetical protein RhiirC2_735788 [Rhizophagus irregularis] >PKY28072.1 hypothetical protein RhiirB3_416690 [Rhizophagus irregularis])

HSP 1 Score: 66.2 bits (160), Expect = 5.900e-8
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0
Query:   16 EVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            E L  +HE+S LLNTGLDR TL++ +NLCE GVNPEALA V++ELR
Sbjct:   11 ETLDILHEMSTLLNTGLDRDTLSLCLNLCENGVNPEALAAVIKELR 56          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_013792925.1 (mitotic-spindle organizing protein 1-like [Limulus polyphemus])

HSP 1 Score: 66.2 bits (160), Expect = 5.900e-8
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    2 GGTSAIMKRDKEWQEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            G T++ + + KE  E+   + EIS LLNTGLD +TLAI V LCE+GVNPEALA V++ELR
Sbjct:    8 GSTASTILQAKETFEI---IQEISRLLNTGLDTETLAICVRLCESGVNPEALASVIRELR 64          
BLAST of NO17G02050 vs. NCBI_GenBank
Match: XP_008038370.1 (hypothetical protein TRAVEDRAFT_47747 [Trametes versicolor FP-101664 SS1] >EIW58604.1 hypothetical protein TRAVEDRAFT_47747 [Trametes versicolor FP-101664 SS1])

HSP 1 Score: 66.2 bits (160), Expect = 5.900e-8
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    9 KRDKEWQEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNPEALALVVQELR 62
            +R    +E L  +H+IS LLNTGLD++TLA  V L E+GVNPEALA VVQELR
Sbjct:    7 ERHSAAEETLNTLHDISQLLNTGLDKETLATCVGLIESGVNPEALAAVVQELR 59          
The following BLAST results are available for this feature:
BLAST of NO17G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CEO98787.11.400e-970.00hypothetical protein PBRA_006901 [Plasmodiophora b... [more]
XP_002116704.15.300e-973.91hypothetical protein TRIADDRAFT_60747 [Trichoplax ... [more]
XP_024392953.12.000e-872.34mitotic-spindle organizing protein 1-like [Physcom... [more]
XP_013410601.12.000e-870.21mitotic-spindle organizing protein 1 [Lingula anat... [more]
XP_001432874.14.500e-861.11hypothetical protein [Paramecium tetraurelia strai... [more]
PNR43589.14.500e-874.47hypothetical protein PHYPA_015970 [Physcomitrella ... [more]
XP_004364387.15.900e-864.00hypothetical protein CAOG_01519 [Capsaspora owczar... [more]
EXX50288.15.900e-867.39hypothetical protein RirG_272230 [Rhizophagus irre... [more]
XP_013792925.15.900e-858.33mitotic-spindle organizing protein 1-like [Limulus... [more]
XP_008038370.15.900e-862.26hypothetical protein TRAVEDRAFT_47747 [Trametes ve... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02050.1NO17G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|165965gene_7682Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02050.1NO17G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02050 ID=NO17G02050|Name=NO17G02050|organism=Nannochloropsis oceanica|type=gene|length=831bp
ATGGGCGGGACTAGTGCGATCATGAAACGGGACAAGGAGTGGCAAGAAGT
CTTGGGCGgtaaggatgacacagccactccctccctcccctccttttccg
tgcttgtcctcattgcatgcccccctcgatgcgggctgatgcgacgtcgc
tgttccccgtccaggcatgaccatgaatgagaaggtgatgctttcgttct
cactcttcctcatccctcgcctttgcccataccctccctctccttccctc
ccttcatgtggcccttgttttttgcctccgcttctcctatctaaaccccc
cagcgctcctatcccaatcatctagactgtattcactttcactttttttt
ttaattactgcttattttcatcctggcctctatcttcttccctcccctcc
ctccatttcttcccatcacgttgaaacagCCGTGCACGAGATCTCCAACC
TTCTTAACACGGGCTTGGACCGACAGACACTCGCCATCCTCGTCAATTTG
TGTGAAGCCGGTGTCAACCCTGAAGCGTTAGCCCTCGgtacgtggtgaag
tgcagtgcaggggttttctgaagtaaatgatgtgtgtaggtatggcagca
tctttgacgcgtattttctcctcgttcctactccaccaagcacttttcac
gcgaaaatcccctgtccgtaaccattcactcacgcgtccgctctctatct
cccatacacgcacaccgtcagTGGTGCAAGAGCTGCGAAAGGAGGCCGCC
AGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAGGAGCAGGCCAC
TGGCAGGGATCGGTCGACAGATCGTAACTGA
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protein sequence of NO17G02050.1

>NO17G02050.1-protein ID=NO17G02050.1-protein|Name=NO17G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MGGTSAIMKRDKEWQEVLGAVHEISNLLNTGLDRQTLAILVNLCEAGVNP
EALALVVQELRKEAASKQQQQQQQQHQQEQATGRDRSTDRN*
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Synonyms
Publications