NO17G01920, NO17G01920 (gene) Nannochloropsis oceanica

Overview
NameNO17G01920
Unique NameNO17G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2294
Alignment locationchr17:550982..553275 -

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Properties
Property NameValue
DescriptionPentatricopeptide repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:550982..553275 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO17G01920 vs. NCBI_GenBank
Match: XP_005852711.1 (pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU23120.1 pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.4 bits (633), Expect = 5.200e-62
Identity = 134/228 (58.77%), Postives = 166/228 (72.81%), Query Frame = 0 
Query:  230 DEQQVLELLESLRRRRRRDEF-RATTRTSINQRSTNKG-----GIDIKRLKEGGSTEVLEALVRAAAACQELEIAWDVMRVVLQRAEELQPGEAPWVPQWDTFSTLMSACRRRRELDLLMRVFKASLPYQGFSKVVLLNILLAGLCDHNKHMDVAAYYLETAEVKWGVRPNEVSWNTLLGAAARGGQHRLFEEMERQMKKQGVEGDVTTRNIQLQHLLAVRPGLGLQM 452
            +E +VL +LE L RRRRRDEF  A  R    +R   KG      ++I R++E GS EVLEA +RAAAACQE  +AW  M V+L+R +     E  W P+WDTFSTLM++ RR +ELDLL+R FK +L ++G SK VLLNILLAGLCD NKH+DVAA+YLETA+ KWGV PNEVSWNTLLGAAAR  Q RLFE++ER+M  QG+EGDVTTRNI+LQ   +    LG+ +
Sbjct:   98 EEGRVLAMLEGLARRRRRDEFCAAIGRMGFGKREKGKGKPRVAAVNIHRVEEEGSLEVLEAFIRAAAACQEPRVAWGAMEVMLRRLDGAGE-EKAWSPRWDTFSTLMNSLRRGKELDLLLRSFKTALRFRGLSKTVLLNILLAGLCDKNKHVDVAAFYLETAQAKWGVTPNEVSWNTLLGAAARQSQGRLFEDLERKMAAQGLEGDVTTRNIRLQEAFSGGRDLGISL 324
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BLAST of NO17G01920 vs. NCBI_GenBank
Match: EWM24264.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 4.200e-19
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0 
Query:  476 MDLRTMNIMAGHLARIRGFDEAQAMVEEVKRRGLGITPRAVTHNILLDALLKTGRVDEALEYFYGIAGNGNAAA-XXXXDRQNGTNQGRGTRGGG 570
            MDLRT+NIMAG+LAR +GFDEAQAMVE+V+R   GI PRAVTHNILLDALLK  RV+EALEYFY +A   ++A        + G+      +GGG
Sbjct:    1 MDLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSARRGSRXXXXRQGGG 95
The following BLAST results are available for this feature:
BLAST of NO17G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852711.15.200e-6258.77pentatricopeptide repeat-containing protein, parti... [more]
EWM24264.14.200e-1960.00Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01920.1NO17G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01920.1NO17G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01920 ID=NO17G01920|Name=NO17G01920|organism=Nannochloropsis oceanica|type=gene|length=2294bp
TGGTGTTGTGTTGTCAAAGCCTGTGATTGAGTGTTTGCCGCAGGTTTCAG
TGGGATTTTCGGTCGTGAGGCAGAGGAAGCGAAGAGACTGCAACTGCTTG
TGAGAAAATCGGTCAGGATACTCGAGGGCTTTTGGACAAGGCTTTGACTA
CCTAGCCAACCTCAAGTCAATCTTCAGACGCTGACACTGACATTCTCGTC
TAATAACTCAATGTAGGTCACCTTAGTGCGCTTGTGCTCGCTTTCCACGG
TCTCCTTTTGCAGCTTCGACATCACACGACCTGTTAGTGACTGATTGAAG
CACCGCGGCTTCTCGCATATCATCCTAGTCCTGGGTCCTGGCCCTCCTTA
ATgtacgtgtgtgatggtagaccggactgcatacggctgtcaattgtgtg
attgaataaattgccgtcaatacatcctgtgaacgaggtttccttgtcgc
ccatgcgcgccgtcatgatcccttccttccccaccaatgtgatgcttact
ccctccgccttgccacctttcagACAATGAACTAGCGACATCAGAGAGTA
CACAGCATCTCCACACCGTCTCATGAAGAGACGACGAAGATGTGGCAGCG
GCAGCTCGCTGGAAGCGCTAACCGTGGTGCTGCTGGTGTTGCGGAAAACC
ACGGGATTTTGCCCCCCGTTGCCCCCCTGTCACCACTGTCCTCAGTGGCA
CGCGCCGGCGCCTTCCTCATCATGGCAAGAACATGGGCATACAAGAAGAC
AAGACATGTGGACTTTGCCCCGGAGTCCATTTTGGGAGGAGGAAGTGGGT
AGGAGGAGAAGATCGAGAAGAAGAAGTGGCGCAGTAGGTCCCTTGTTGAG
CACAACAGCAAGCACCACAAGCAGCAGCACCAGCAGTAGCACCAGCAGCA
GCACCAGCAGCGCCAGCAGCGCCAACAGTATCCTTGCGGACAGAAAGACA
GAGCCGGCGGACGATGAAACAACATCTCTGTCGCTAAAAGCTTCCTTCTC
CTCCTCACCCTCATCCTCCTCCTCTCGAATGTCCTCACCATCATCATCCT
CCCTCGCTGCTAGCACCGATAGTACGGCTGAATCCCGGGAATGTAAGCGC
GTGGCGCTTACACCCACATCATCTTCATCAGTGTCACTAAAATCAGCCAC
CCGCACCCCCTCGTCACCACCACTACCATCCCGGACAAAGGCAGCCCCAG
CATCGCGGCGTCCATCCACACCACCACCACCAAGGCGGACCATGACTCAG
CTTGATAGAGACGAGCAACAGGTGCTAGAGTTATTAGAGAGTCTGCGTCG
ACGTCGACGACGAGACGAATTTCGTGCTACCACCAGAACAAGCATTAACC
AGAGATCTACCAATAAGGGTGGAATTGATATAAAGAGGTTGAAAGAAGGA
GGGAGTACCGAGGTGCTCGAAGCGCTAGTACGAGCCGCAGCGGCCTGTCA
AGAGTTAGAGATCGCTTGGGATGTTATGCGTGTCGTTTTACAACGCGCCG
AGGAGCTGCAGCCGGGGGAAGCCCCGTGGGTGCCACAGTGGGATACCTTC
TCAACGCTGATGAGTGCGTGTCGGAGGAGGAGAGAACTGGATTTACTAAT
GCGAGTCTTTAAGGCCTCGTTGCCCTACCAAGGGTTCAGTAAGGTGGTCT
TGTTGAACATTCTATTGGCGGGTCTGTGTGACCATAATAAGCATATGGAT
GTGGCGGCGTATTATTTAGAGACAGCGGAAGTTAAGTGGGGGGTGAGGCC
TAATGAGGTGAGCTGGAACACACTCTTGGGTGCCGCGGCACGAGGGGGGC
AGCACCGCTTGTTTGAGGAGATGGAACGACAGATGAAGAAGCAGGGTGTG
GAGGGGGACGTAACGACGCGGAACATCCAATTGCAGCATCTCCTGGCTGT
GAGGCCCGGACTGGGTTTGCAGATGTTTGAGAAAATGAAAACGCAACAGG
AGGAGGGGCGGAGAAAAGGACGGAGAGACGGAAGGGGTAAAGAGGTGATG
GATTTGAGGACGATGAATATCATGGCGGGGCATTTGGCACGGATAAGGGG
GTTTGACGAGGCGCAGGCGATGGTGGAAGAGGTGAAGAGGAGGGGGCTAG
GAATTACTCCCCGAGCAGTGACGCATAACATATTGCTAGATGCCTTGCTG
AAGACGGGGAGGGTAGACGAGGCACTCGAATATTTTTATGGTATCGCGGG
GAATGGGAATGCCGCTGCTGGTGGTGGTGGCGACAGGCAAAACGGCACTA
ACCAGGGTCGTGGTACCAGGGGGGGAGGGAGGGAGGGAGAGTAG
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protein sequence of NO17G01920.1

>NO17G01920.1-protein ID=NO17G01920.1-protein|Name=NO17G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MKRRRRCGSGSSLEALTVVLLVLRKTTGFCPPLPPCHHCPQWHAPAPSSS
WQEHGHTRRQDMWTLPRSPFWEEEVGRRRRSRRRSGAVGPLLSTTASTTS
SSTSSSTSSSTSSASSANSILADRKTEPADDETTSLSLKASFSSSPSSSS
SRMSSPSSSSLAASTDSTAESRECKRVALTPTSSSSVSLKSATRTPSSPP
LPSRTKAAPASRRPSTPPPPRRTMTQLDRDEQQVLELLESLRRRRRRDEF
RATTRTSINQRSTNKGGIDIKRLKEGGSTEVLEALVRAAAACQELEIAWD
VMRVVLQRAEELQPGEAPWVPQWDTFSTLMSACRRRRELDLLMRVFKASL
PYQGFSKVVLLNILLAGLCDHNKHMDVAAYYLETAEVKWGVRPNEVSWNT
LLGAAARGGQHRLFEEMERQMKKQGVEGDVTTRNIQLQHLLAVRPGLGLQ
MFEKMKTQQEEGRRKGRRDGRGKEVMDLRTMNIMAGHLARIRGFDEAQAM
VEEVKRRGLGITPRAVTHNILLDALLKTGRVDEALEYFYGIAGNGNAAAG
GGGDRQNGTNQGRGTRGGGREGE*
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Synonyms
Publications