NO17G01780, NO17G01780 (gene) Nannochloropsis oceanica

Overview
NameNO17G01780
Unique NameNO17G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1290
Alignment locationchr17:513182..514471 +

Link to JBrowse

Properties
Property NameValue
DescriptionRmd5 like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:513182..514471 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH
IPR027711Rmd5
IPR024964CTLH/CRA
IPR027370Znf-RING_LisH
IPR013144CRA_dom
Homology
BLAST of NO17G01780 vs. NCBI_GenBank
Match: EWM24287.1 (rmd5 like protein [Nannochloropsis gaditana])

HSP 1 Score: 531.2 bits (1367), Expect = 3.000e-147
Identity = 283/433 (65.36%), Postives = 332/433 (76.67%), Query Frame = 0
Query:    1 MCDSLLADWARLRDKQRQNTEVTLRLVDRVSVAVEEVATATASTTSRGPPSPTSLDDVIPQLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNSTGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMK----GGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            MCDSLL +  RLR+KQRQNTE+ LRLV+ V  A+E+  +    TT + P S  SL+D++PQLVQQHKTYHAALSK  K+VDR+FL+A PPV MCRP    D  L+D+MV  HLYR GRT TA KLV+EAGL S+AL  +AHEALARVH+VI AA ++R+LGPA  WAAEH EGL+ +GSNLEF+LARLQF+ L+  D    ++ K  E    EDAK+EEEE     E      +DD+A++FAR+HLAPFAV GGG+ E+VR LMG LLYAGRLDRSPY+  L+P LW +AMEALHTEGCR+LGLPVES LSVCYRASL A+GPLAKMRQVV NS GDWE LEELPG I+ G   SLRFHSVFSCPVTREQAS ANPPM+LKCGHVICR+SL RL+K    GG    G H   RFKCF+CPVEQ  QDAQQ+YF
Sbjct:    1 MCDSLLTELTRLREKQRQNTEIMLRLVNSVGAALED--SLGEPTTPQVPHS--SLEDIMPQLVQQHKTYHAALSKMTKSVDRVFLDATPPVFMCRPLRKEDRGLVDQMVGQHLYRRGRTRTAVKLVQEAGLCSSALNLQAHEALARVHEVIAAASKKRDLGPARAWAAEHREGLKHVGSNLEFKLARLQFVKLVAGD---GSQGKRAE----EDAKEEEEETPLGCEGEASTHQDDLAISFAREHLAPFAVEGGGNAEEVRKLMGSLLYAGRLDRSPYKRYLAPRLWADAMEALHTEGCRMLGLPVESSLSVCYRASLHAMGPLAKMRQVVLNSKGDWEALEELPGGIEWGRDSSLRFHSVFSCPVTREQASRANPPMVLKCGHVICRNSLNRLLKPQTAGGRASQGQH---RFKCFICPVEQTLQDAQQIYF 419          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: XP_011149860.1 (PREDICTED: protein RMD5 homolog A isoform X1 [Harpegnathos saltator])

HSP 1 Score: 221.9 bits (564), Expect = 3.900e-54
Identity = 144/384 (37.50%), Postives = 199/384 (51.82%), Query Frame = 0
Query:   53 TSLDDVIPQLVQQHKTYHAALSKFIKAVDRIFL----EAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGR-LDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNS--TGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            T + D + +L   H+  H+ +SK  KA+DR F+          V C P  +    L+++++  H YR+G    A +L  EAG+ +   R E    L      I   +++R L PA  WA +H E L    S+LEF+L RLQF + L +   C    K+TE                             A+ +ARQ+L  F    G H ++V++LMG LLY    +  SPY  LL+P LW E  +    E C LLGL V+SPLSVC  A   AL  L  ++QV+Q    TG W G +ELP EIDLG +   R+HSVF+CP+ R+Q++ +NPPM L CGHVI R +L +L       N      R KC  CPVEQ P+DA+ +YF
Sbjct:   65 TKVRDTVIKLATDHRDLHSTVSKVGKAIDRNFIADFASTSREDVFCGPEKS---HLLNQVICQHFYRQGMLDIADELAAEAGIKTDEGRKEPFTEL----NFILDCLKQRNLEPALEWAKKHREALMAQNSSLEFKLHRLQF-IRLVQQGPC----KQTE-----------------------------AILYARQNLTRFV---GRHEKEVQSLMGTLLYLPHGIQSSPYSHLLNPTLWLEIHDVFTREACMLLGLSVDSPLSVCINAGCTALPALLNIKQVMQQRQVTGIWNGKDELPIEIDLGKQG--RYHSVFACPILRQQSTESNPPMKLVCGHVISRDALNKLTNA----NKNQFVSRLKCPYCPVEQNPEDARLIYF 398          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: XP_011149939.1 (PREDICTED: protein RMD5 homolog A isoform X2 [Harpegnathos saltator] >EFN90030.1 Protein RMD5-like protein A [Harpegnathos saltator])

HSP 1 Score: 219.2 bits (557), Expect = 2.500e-53
Identity = 142/384 (36.98%), Postives = 198/384 (51.56%), Query Frame = 0
Query:   53 TSLDDVIPQLVQQHKTYHAALSKFIKAVDRIFL----EAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGR-LDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNS--TGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            T + D + +L   H+  H+ +SK  KA+DR F+          V C P  +    L+++++  H YR+G    A +L  EAG+ +   R E    L      I   +++R L PA  WA +H E L    S+LEF+L RLQF + L +   C    K+TE                             A+ +ARQ+L  F    G H ++V++LMG LLY    +  SPY  LL+P LW E  +    E C LLGL V+SPLSVC  A   AL  L  ++QV+Q    TG W G +ELP EIDLG +   R+HSVF+CP+ R+Q++ +NPPM L CGHVI R +L +L              + KC  CPVEQ P+DA+ +YF
Sbjct:   65 TKVRDTVIKLATDHRDLHSTVSKVGKAIDRNFIADFASTSREDVFCGPEKS---HLLNQVICQHFYRQGMLDIADELAAEAGIKTDEGRKEPFTEL----NFILDCLKQRNLEPALEWAKKHREALMAQNSSLEFKLHRLQF-IRLVQQGPC----KQTE-----------------------------AILYARQNLTRFV---GRHEKEVQSLMGTLLYLPHGIQSSPYSHLLNPTLWLEIHDVFTREACMLLGLSVDSPLSVCINAGCTALPALLNIKQVMQQRQVTGIWNGKDELPIEIDLGKQG--RYHSVFACPILRQQSTESNPPMKLVCGHVISRDALNKLTNA----------NKLKCPYCPVEQNPEDARLIYF 392          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: XP_014482125.1 (PREDICTED: protein RMD5 homolog A isoform X2 [Dinoponera quadriceps])

HSP 1 Score: 219.2 bits (557), Expect = 2.500e-53
Identity = 143/384 (37.24%), Postives = 197/384 (51.30%), Query Frame = 0
Query:   53 TSLDDVIPQLVQQHKTYHAALSKFIKAVDRIFL----EAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGR-LDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNS--TGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            T + D + +L   H+  H+ +SK  KA+DR F+          V C P  +    L+++++  H YR+G    A +L  EAG+ +   R E    L      I   +++R L PA  WA +H E L    S+LEF+L RL F + L +   C    K+TE                             A+ +ARQ+L  F    G H ++V++LMG LLY    +  SPY  LL P LW E  +    E C LLGL V+SPLSVC  A   AL  L  ++QV+Q    TG W G +ELP EIDLG +   R+HSVF+CP+ R+Q++ +NPPM L CGHVI R +L +L       N      R KC  CPVEQ P+DA+ +YF
Sbjct:   65 TKVRDTVIKLATDHRDLHSTVSKVGKAIDRNFIADFASTSREDVFCGPEKS---HLLNQVICQHFYRQGMLDIADELAAEAGIKTDEGRKEPFTEL----NFILDCLKQRNLEPALEWAKKHREALLAQSSSLEFKLHRLHF-IRLVQQGPC----KQTE-----------------------------AILYARQNLTQFV---GRHEKEVQSLMGTLLYLPHGIQSSPYSHLLDPTLWLEIHDVFTKEACMLLGLSVDSPLSVCINAGCTALPALLNIKQVMQQRQVTGIWSGKDELPIEIDLGKQG--RYHSVFACPILRQQSTESNPPMKLVCGHVISRDALNKLTSA----NKNQFVSRLKCPYCPVEQNPEDARLIYF 398          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: XP_004348076.1 (hypothetical protein CAOG_04251 [Capsaspora owczarzaki ATCC 30864] >KJE93463.1 hypothetical protein CAOG_004251 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 217.2 bits (552), Expect = 9.700e-53
Identity = 136/379 (35.88%), Postives = 196/379 (51.72%), Query Frame = 0
Query:   54 SLDDVIPQLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQN---STGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            S+ +   ++ ++H+  HA +S+F K +D+ F+                  L++E++A HL R+G    A   + E+GL+    +      +      I  A ++++L PA RWA+E+ + L+R+GS+LEF+L +L+FL  L  D                                    RD  AL +AR    PF+     H+ +V+ LMGCLLY GR   +PY +L+    W E   A   + C +LG+  +SPL V + A   AL  L KM  V+Q    S+  W   +ELP EI+LG     +FHSVF+CPV+REQAS  NPPMM+KCGHV+C+ SL RL K     NGG    RFKC  CPVEQ P DA  ++F
Sbjct:   93 SVKEACDKVTEEHRDMHATVSRFGKTIDKAFVTDIDKFANPAAFEGAQAALLNEVIAKHLLRQGHFAAAETFIRESGLTLEQPQLGPFIEMYN----IMEAFKQQDLAPALRWASENRQALERIGSSLEFKLHKLEFLRRLQIDR-----------------------------------RD--ALQYARVQFVPFS---HSHLNEVQRLMGCLLYYGRAPPTPYMELVDSIHWTEIAHAFTRDCCAMLGMTYDSPLFVSFLAGCAALPTLLKMASVMQGRGASSTLWTSKDELPVEIELG--KDSQFHSVFACPVSREQASPENPPMMMKCGHVVCKLSLERLSK-----NGG----RFKCPYCPVEQTPADAHIVHF 416          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: XP_014482124.1 (PREDICTED: protein RMD5 homolog A isoform X1 [Dinoponera quadriceps])

HSP 1 Score: 216.5 bits (550), Expect = 1.600e-52
Identity = 141/384 (36.72%), Postives = 196/384 (51.04%), Query Frame = 0
Query:   53 TSLDDVIPQLVQQHKTYHAALSKFIKAVDRIFL----EAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGR-LDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNS--TGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            T + D + +L   H+  H+ +SK  KA+DR F+          V C P  +    L+++++  H YR+G    A +L  EAG+ +   R E    L      I   +++R L PA  WA +H E L    S+LEF+L RL F + L +   C    K+TE                             A+ +ARQ+L  F    G H ++V++LMG LLY    +  SPY  LL P LW E  +    E C LLGL V+SPLSVC  A   AL  L  ++QV+Q    TG W G +ELP EIDLG +   R+HSVF+CP+ R+Q++ +NPPM L CGHVI R +L +L              + KC  CPVEQ P+DA+ +YF
Sbjct:   65 TKVRDTVIKLATDHRDLHSTVSKVGKAIDRNFIADFASTSREDVFCGPEKS---HLLNQVICQHFYRQGMLDIADELAAEAGIKTDEGRKEPFTEL----NFILDCLKQRNLEPALEWAKKHREALLAQSSSLEFKLHRLHF-IRLVQQGPC----KQTE-----------------------------AILYARQNLTQFV---GRHEKEVQSLMGTLLYLPHGIQSSPYSHLLDPTLWLEIHDVFTKEACMLLGLSVDSPLSVCINAGCTALPALLNIKQVMQQRQVTGIWSGKDELPIEIDLGKQG--RYHSVFACPILRQQSTESNPPMKLVCGHVISRDALNKLTSA----------NKLKCPYCPVEQNPEDARLIYF 392          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: NP_001149153.2 (uncharacterized LOC100282775 [Zea mays] >XP_008676793.1 uncharacterized LOC100282775 isoform X1 [Zea mays] >XP_008676800.1 uncharacterized LOC100282775 isoform X1 [Zea mays] >XP_008676805.1 uncharacterized LOC100282775 isoform X1 [Zea mays] >XP_008676809.1 uncharacterized LOC100282775 isoform X1 [Zea mays] >ACR34292.1 unknown [Zea mays] >ONM05412.1 LisH/CRA/RING-U-box domains-containing protein [Zea mays])

HSP 1 Score: 216.1 bits (549), Expect = 2.200e-52
Identity = 149/440 (33.86%), Postives = 220/440 (50.00%), Query Frame = 0
Query:    3 DSLLADWARLRDKQRQNTEVTLRLVDRVSVAVEEVATA-----TASTTSRGPPS-----PTSLDDVIP--QLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAG-LSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNSTGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            DSL   + R+ +K+  ++   L +VD++   +E+         T ST +   PS        L+++ P  QL    K  + ALSK++K +++ F    P +     +V  +   ++ ++A H YR+G        V E G L  A+L+    E  A     I  A++ R L PA  WAA++H+ L + GS LEF+L +LQF+ +L                             SK  RG  +   D AL +AR HL PFA     H E+ + LM CLL+ GRLD+SPY +L+S   WE+  E L  + C LLG   ESPLSV   A  + L  L K+ QV+     +W+ +++LP  ID+G  P  ++HSVF CPV REQ+S  NPPM + CGHV+ + S+ +L K           + FKC  CP E      +QL+F
Sbjct:    4 DSLREGFDRVAEKRSLSSAKALEVVDQIVNEIEQAIVKLQMMNTDSTGNVDHPSILAELKAKLNEMAPLNQLEGSQKELNVALSKYLKLLEKSF---NPDISKAYRNVDFEVHTVNNIIANHFYRQGLFDLGDMFVHECGELGGASLKLPFQEMYA-----ILEAMKARNLEPALSWAAKNHDQLLQNGSMLEFKLYQLQFVEIL-----------------------------SKGSRGEAK---DEALLYARTHLVPFAAV---HKEEFQKLMACLLWVGRLDQSPYSELMSSAHWEKLAEELTHQFCSLLGQSRESPLSVAVSAGFQGLPTLLKLTQVMAAKKQEWQVMKQLPVPIDIG--PEFQYHSVFVCPVLREQSSDENPPMRMPCGHVVSKQSIMKLSKSS--------SRAFKCPYCPSEAMASHCKQLHF 390          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: ACG34392.1 (protein UNQ2508/PRO5996 [Zea mays])

HSP 1 Score: 215.3 bits (547), Expect = 3.700e-52
Identity = 149/440 (33.86%), Postives = 219/440 (49.77%), Query Frame = 0
Query:    3 DSLLADWARLRDKQRQNTEVTLRLVDRVSVAVEEVATA-----TASTTSRGPPS-----PTSLDDVIP--QLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAG-LSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNSTGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            DSL   + R+ +K+  ++   L  VD++   +E+         T ST +   PS        L+++ P  QL    K  + ALSK++K +++ F    P +     +V  +   ++ ++A H YR+G        V E G L  A+L+    E  A     I  A++ R L PA  WAA++H+ L + GS LEF+L +LQF+ +L                             SK  RG  +   D AL +AR HL PFA     H E+ + LM CLL+ GRLD+SPY +L+S   WE+  E L  + C LLG   ESPLSV   A  + L  L K+ QV+     +W+ +++LP  ID+G  P  ++HSVF CPV REQ+S  NPPM + CGHV+ + S+ +L K           + FKC  CP E      +QL+F
Sbjct:    4 DSLREGFDRVAEKRSLSSAKALEAVDQIVNEIEQAIVKLQMMNTDSTGNVDHPSILAELKAKLNEMAPLNQLEGSQKELNVALSKYLKLLEKSF---NPDISKAYRNVDFEVHTVNNIIANHFYRQGLFDLGDMFVHECGELGGASLKLPFQEMYA-----ILEAMKARNLEPALSWAAKNHDQLLQNGSMLEFKLYQLQFVEIL-----------------------------SKGSRGEAK---DEALLYARTHLVPFAAV---HKEEFQKLMACLLWVGRLDQSPYSELMSSAHWEKLAEELTHQFCSLLGQSRESPLSVAVSAGFQGLPTLLKLTQVMAAKKQEWQVMKQLPVPIDIG--PEFQYHSVFVCPVLREQSSDENPPMRMPCGHVVSKQSIMKLSKSS--------SRAFKCPYCPSEAMASHCKQLHF 390          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: XP_009368335.1 (PREDICTED: protein RMD5 homolog A-like [Pyrus x bretschneideri] >XP_009368337.1 PREDICTED: protein RMD5 homolog A-like [Pyrus x bretschneideri] >XP_009368338.1 PREDICTED: protein RMD5 homolog A-like [Pyrus x bretschneideri] >XP_018505531.1 PREDICTED: protein RMD5 homolog A-like [Pyrus x bretschneideri] >XP_018505532.1 PREDICTED: protein RMD5 homolog A-like [Pyrus x bretschneideri])

HSP 1 Score: 214.5 bits (545), Expect = 6.300e-52
Identity = 125/371 (33.69%), Postives = 187/371 (50.40%), Query Frame = 0
Query:   59 IPQLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNSTGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            IPQL   HK    +LSK+ K ++R        +      V  D  ++++M+A H YREG       +++EAG   + +          +H+++  A++ + L PA  W + + E L ++GSNLE +L  LQFL +L + N+ +                                    AL +AR  L+PFA     H ++V  LMGCL+YAGRLD SPY ++ SP  WE++ME L  + C LLG    SPLS+   A    L  L K+  V+     +W+ +++LP  +DLG     +FHS+F CPV+R+Q S  NPPM++ C HV+C+ S+ +L K G         + FKC  CP E      +QLYF
Sbjct:   71 IPQLEGSHKELVVSLSKYTKLLER---SLNSDISKAYRYVDFDHHIVNQMIANHFYREGSFNLGDGIIDEAGEPESTI---LKSQFMELHQIV-EAMKVKNLEPALNWVSANREKLNQIGSNLEVKLHSLQFLEILQKGNLAS------------------------------------ALQYARTCLSPFASPPSPHKDEVVKLMGCLIYAGRLDSSPYSEITSPTHWEKSMEDLTRQFCSLLGQSYNSPLSMTMAAGFEGLPTLLKLANVMAARKQEWQAMKQLPVPLDLG--KEFQFHSIFVCPVSRDQGSQENPPMLMPCLHVLCKQSILKLSKSG--------TRTFKCPYCPAEASVAQCRQLYF 388          
BLAST of NO17G01780 vs. NCBI_GenBank
Match: PIN16463.1 (putative E3 ubiquitin ligase [Handroanthus impetiginosus])

HSP 1 Score: 214.5 bits (545), Expect = 6.300e-52
Identity = 143/430 (33.26%), Postives = 212/430 (49.30%), Query Frame = 0
Query:   11 RLRDKQRQNTEVTLRLVDRVSVAVEEVATATASTTSRGPPS---------PTSLDDVIP--QLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTLDPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKVITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVCNARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFAVAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCRLLGLPVESPLSVCYRASLRALGPLAKMRQVVQNSTGDWEGLEELPGEIDLGGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHGHNGGHPQQRFKCFVCPVEQYPQDAQQLYF 430
            R+  KQ+ +   +  +++++   +E+  +   S      PS            L ++ P  QL    K  + ALSK+ K +++ F    P +     ++  D   +++++A H YREGR       V+E     AAL       +      I  A++ R L PA  WAA +HE L + GS++E +L RLQF+ +L                                 RGR     D AL +AR  LAPFA     HM +++ LM CLL+AGRLD SPY +LLS   W++  E L  E C L+G   ESPLSV   A ++ L  L K+  V+     +W+ +++LP  +DL  +   +FHS+F CPV+R+QAS  NPPM+L CGHV+C+ S+ +L K    +N   P   FKC  CP E      +QLYF
Sbjct:   12 RVTKKQKLSCSKSQEVIEQIGQEIEQALSRIQSGQDSASPSDHKLILNELKAKLKEIAPLSQLESTQKELNVALSKYPKLLEKSF---NPDISKAYRNIDFDIHAVNQIIANHFYREGRFDLGDCFVDETKEPEAALMKSPFVEMFH----ILEAMKSRNLEPALNWAANNHEQLTQNGSDIELKLHRLQFVEIL-------------------------------QNRGR-----DEALKYARAFLAPFATK---HMAEIQKLMACLLWAGRLDSSPYAELLSSIHWDKLAEELTREFCNLIGQSYESPLSVTIAAGVQGLPTLLKLMNVMTGKKHEWQSMKQLPVPVDLDRE--FQFHSIFVCPVSRDQASEENPPMLLSCGHVLCKQSITKLSK----NNSTRP---FKCPYCPSEVEAGQCRQLYF 386          
The following BLAST results are available for this feature:
BLAST of NO17G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24287.13.000e-14765.36rmd5 like protein [Nannochloropsis gaditana][more]
XP_011149860.13.900e-5437.50PREDICTED: protein RMD5 homolog A isoform X1 [Harp... [more]
XP_011149939.12.500e-5336.98PREDICTED: protein RMD5 homolog A isoform X2 [Harp... [more]
XP_014482125.12.500e-5337.24PREDICTED: protein RMD5 homolog A isoform X2 [Dino... [more]
XP_004348076.19.700e-5335.88hypothetical protein CAOG_04251 [Capsaspora owczar... [more]
XP_014482124.11.600e-5236.72PREDICTED: protein RMD5 homolog A isoform X1 [Dino... [more]
NP_001149153.22.200e-5233.86uncharacterized LOC100282775 [Zea mays] >XP_008676... [more]
ACG34392.13.700e-5233.86protein UNQ2508/PRO5996 [Zea mays][more]
XP_009368335.16.300e-5233.69PREDICTED: protein RMD5 homolog A-like [Pyrus x br... [more]
PIN16463.16.300e-5233.26putative E3 ubiquitin ligase [Handroanthus impetig... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002961NSK002961Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01780.1NO17G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599752gene_7714Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g23gene6236Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01780.1NO17G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01780 ID=NO17G01780|Name=NO17G01780|organism=Nannochloropsis oceanica|type=gene|length=1290bp
ATGTGTGACAGCCTGCTCGCGGACTGGGCACGGCTCCGGGATAAACAGCG
CCAGAATACGGAGGTAACGTTGCGGTTGGTGGACAGGGTGAGCGTGGCTG
TGGAAGAAGTTGCCACAGCGACAGCATCCACGACCTCCCGCGGTCCTCCT
TCCCCAACCTCCCTCGATGATGTCATTCCGCAGCTGGTCCAGCAGCACAA
GACCTACCACGCTGCCCTTTCCAAATTCATCAAGGCCGTGGACCGGATCT
TTCTAGAGGCCAAACCACCAGTCGTAATGTGCCGCCCCTCCGTAACTCTG
GATCCTCGCCTGATTGATGAGATGGTGGCCTTGCACCTCTACCGCGAAGG
AAGGACGTGCACCGCCGCCAAGCTCGTGGAAGAAGCGGGTCTTTCATCAG
CGGCACTTCGATTTGAAGCGCACGAAGCATTGGCTCGTGTACATAAAGTG
ATCACTGCGGCGATTGAGCGCCGAGAGTTGGGACCGGCTTGTCGGTGGGC
GGCAGAGCATCACGAGGGGTTGCAGCGACTGGGAAGCAACCTGGAGTTTC
AGCTTGCGCGACTCCAGTTCCTCGTACTGTTGACTAGGGATAATGTCTGT
AATGCCAGATGGAAAGAGACAGAGGTTGTAAAGATGGAAGACGCCAAGGA
TGAGGAGGAAGAGGGGAAGAGCAAACATGAGCGGGGACGGAAGCGGATCC
GAGATGACGTGGCTTTGACTTTTGCACGACAGCACCTCGCCCCTTTCGCC
GTAGCCGGCGGCGGCCACATGGAGCAAGTGCGGACGCTGATGGGATGTCT
GCTCTATGCGGGCCGCCTTGACCGTTCACCCTACCAGGACTTGCTCTCGC
CGGAGTTGTGGGAGGAAGCCATGGAGGCGCTGCACACGGAAGGCTGTCGC
TTGCTCGGCCTACCGGTAGAAAGCCCGTTGAGTGTGTGCTATCGCGCCAG
TCTGCGGGCGCTTGGACCCTTGGCGAAGATGCGACAGGTGGTGCAGAATA
GCACGGGGGATTGGGAGGGGCTGGAGGAGTTGCCGGGGGAGATCGACCTT
GGGGGGAAACCCTCCCTGCGGTTTCACAGCGTCTTTTCTTGTCCTGTCAC
GAGGGAGCAGGCCAGTTGGGCGAATCCTCCCATGATGCTCAAATGTGGGC
ATGTCATTTGCCGCAGTAGCCTCGCAAGGCTGATGAAGGGCGGGCATGGG
CACAACGGCGGGCATCCGCAGCAGCGGTTCAAGTGCTTTGTGTGCCCGGT
GGAGCAGTACCCGCAGGACGCACAGCAGCTGTACTTTTGA
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protein sequence of NO17G01780.1

>NO17G01780.1-protein ID=NO17G01780.1-protein|Name=NO17G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MCDSLLADWARLRDKQRQNTEVTLRLVDRVSVAVEEVATATASTTSRGPP
SPTSLDDVIPQLVQQHKTYHAALSKFIKAVDRIFLEAKPPVVMCRPSVTL
DPRLIDEMVALHLYREGRTCTAAKLVEEAGLSSAALRFEAHEALARVHKV
ITAAIERRELGPACRWAAEHHEGLQRLGSNLEFQLARLQFLVLLTRDNVC
NARWKETEVVKMEDAKDEEEEGKSKHERGRKRIRDDVALTFARQHLAPFA
VAGGGHMEQVRTLMGCLLYAGRLDRSPYQDLLSPELWEEAMEALHTEGCR
LLGLPVESPLSVCYRASLRALGPLAKMRQVVQNSTGDWEGLEELPGEIDL
GGKPSLRFHSVFSCPVTREQASWANPPMMLKCGHVICRSSLARLMKGGHG
HNGGHPQQRFKCFVCPVEQYPQDAQQLYF*
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Synonyms
Publications