NO17G01700, NO17G01700 (gene) Nannochloropsis oceanica

Overview
NameNO17G01700
Unique NameNO17G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4176
Alignment locationchr17:493117..497292 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:493117..497292 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR009332Med22
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Homology
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BLAST of NO17G01700 vs. NCBI_GenBank
Match: EWM24249.1 (hypothetical protein Naga_100020g35 [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 2.000e-34
Identity = 84/133 (63.16%), Postives = 100/133 (75.19%), Query Frame = 0 
Query:    1 MSSSXXXXXXXRMDPRREFLRQVNTNVGKCVESMAQLIKTAKMSSVRENAYLEANRVSVLTATILQSSEQLMTQLEQLKRLHVLQDFDALNIELDQAVCILEARQDALGEEVLQWTGVVKEAADRQLAKIVDG 134
            MSSS       R DPR EF R V+ N+ KCVESM QLIKTAKM S RE+A+++ANRV++LT TILQSSEQL+TQ+EQLKRLHVLQDFD +N ELD+ V  LEAR +AL  E   W  VV+ AA+R+LA  VDG
Sbjct:    1 MSSSAVDAATARSDPRCEFRRLVDANILKCVESMGQLIKTAKMGSTREDAHMDANRVTILTGTILQSSEQLLTQIEQLKRLHVLQDFDTINTELDRDVISLEARIEALDAETEHWKAVVQSAANRKLASAVDG 133
The following BLAST results are available for this feature:
BLAST of NO17G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24249.12.000e-3463.16hypothetical protein Naga_100020g35 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002951NSK002951Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01700.1NO17G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672956gene_7721Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g35gene6226Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01700.1NO17G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01700 ID=NO17G01700|Name=NO17G01700|organism=Nannochloropsis oceanica|type=gene|length=4176bp
CCCCCCCTCCCATACCTCCGCGCCCTCCAGCCCCACCCGCACTCCTCCCC
CCGGTCCGATTGGTTTCAAGCTCGGCCCGATCAGGCAGGTGCTGCATGGC
GCGCTGACGACGCAGGTAATCCACAGCACCAATACCCAGCTCCACCTCCT
CAGGGGTAGGCCAGGCGCCGCCGCCAGCAGCAAAAACACCCGGAGTGCCC
GAGGGAAAGGCCTGCCGCACAGCCTCGTTCAGCTCTTGGAGGTCCGCATT
GCTGGCGTTGGAGCTGAGAGTATAGACGGCAAGCAGTCGCAGCTTGTCTT
GTAGCGAGCCCTTGCTGGGGTCAGCGAGAAGGGCCTTGACTGTCGCCTTG
TCGGCTCGGGAGGACATGACCATGGACTCCTCCAGGTCAAACAGCACAGG
CACCTCTCTTGCCGCAATCACATTCATGATGGCCTGTAAGATGTTGGTGT
GGATCTCCAAGGACTTCTTCCGCTCCAGCAGCTTGGGCAAACTGTCCACC
GCCGACAGCAGCTCTTGGGCCGATCCATCTTGTGCTGGGTCCTCTCCTCC
CCCTCCCCCGCCCCCCCCCATCCCCAGCTGGTGAATTGTCTTGGAACGGA
TCTCTTCCTCCTTCTTCGAGACCTCCGCTAGCTCTGCACCGTTGGCTTGG
ATGGCTTCGGGAAAAAGGGCGCCGGCGTACCGGCTGAAGAAGTGGTCGCT
CTCCACATCCAGATCATAGCTCCGTCGCTTCACCGCCCCACCCTCCTCCT
CTGGACGACTCTCGATCGTAACTCGGTTGAGCTTGTGCGGCAGCACGTCG
TCCACCAAAGCTTGGTAGGTGGAAGTGTGGTGCAACGCCGTGATGAGGTC
GTCGTTGCGGTCAAACAAAATGAGCAACGGCCTGTGGAACGCCGCGGCAG
TGCTGCCCGTGCCCCGTGCAAAGAAGGGGGTGTTAGCCAACAGGTGCTCA
GACACTAAATCATTCAGCTGCCGGGCCACCATCTCTGCCGGCCCGCCACT
CGCGCAGCGGATGACGGGGACGGTGCCCACGGTGGCTAGGACGGAGAAGA
GGCCGTAGGTGACTGCGCGGGCATAGGCCTCCATATCGGCCTCAGAGGCG
CCGGGGTTGTTGTAGCCCATGTAAGAATTGGGCTGATTGAGCGTGAAAAG
GCAGGGCTCTAGTGTGACGAAGTCGAGGTACTGATCCACGACTTTAGTGA
CGAGGGAATAGGTGTTGGCGGCGATGGCGTTCTTGGCCAGTCGCTCCATG
AGGGACCGGTCGAGCTTGGAGGTAAAGTTGAGGTACATTGCCGAATAGAG
CCGCTTGTTTAAGTCATCTGTAATGCGCGCAATGTTCTCTTCGCTTGGCT
CGACAAAGTAGACAGCAGGCACGTCCGGTATGTCCTCACGCTCGGACTCG
AGGAGCAGGTGTAGGGTCACGCCGCGCTTTCGGAGCTTGCTTACATTTAG
CAGGGGGGAGATAATGTCGCGGCATTTGCGATCGTATACCAAGACTTTCC
ACTGGTGGATGGTGTGATTTGTGTGTATGGGAGATAAAGGGAGTCGGTGA
GAAGGTGACAGCAGCATTGGGAGCGAGTCGTAGTTGGGTATTGAGAGGGC
GAAATGAATAAACGAGCTGTGGACGATAGATGAGAAAGAGGACATATTGG
ATAAGATAAGGAATGTCTAGAGCATGAAAGGTGAGAGGAAATGAGCGAGC
AAAGAGAAAGCGCCTAAGTAAACTAGTCCCCGAGTGATGAAACAAGGCTG
CGAGCGATGAAACAATGCTGCGCCGCACCTACATCATCTCGGAATACGTA
CATGGTCTGACCACTCGGCGGCACCACCACCGGCTTCGCCGTCTGAGAAC
GGAATGTTGAAATTCAGCATCCGGTTTAACGCTGCCGTCTGCGTTTGTCG
CAGATTTGTGCCCATGGTCTAGTAGGAGTCGTGTGAAAGGCGCGTGTGGA
GAGGAAGGGAGAGCAGGGGGCTATCTTCAGTAAGTGCTGCTACCTTTCGC
AGTGACAATCGGCCCGACCAAGGTCGTCAAGACGACAACGAAGTGGCCAC
GAACCTGCGTTTGTCCTATGCGGTGGGGAGTGTGTGTGTGTCCATGAGTG
TTTCCGGGATGCGAGGGCAATTCAGAGGAAGCGGAGATGTCTCTGAGCCT
TGTAGAGTGGGCGATGCGGCGATAACTCAGACTCGGGCGGTAACAGGCGT
CCGCTTTTGGGCCGGGATTCCGCATAAAATGTATACGTGTGTGTATATAT
GTATGTACATATATATATGTATGTGTATGGGTGTATGTGTGTAGTGCGTG
TCCGCGCGTTGTATACGCGAGGTTGATAAGCACTGTACTCCTTCACCCAC
CCATCCATCATTCAAACACACACATGAGACACGGACTCTGGGAAGGCGGA
AAGAGAGGAGCAAGGAGGTGATCAGATCTTGCCGTGCTGTGTGTGTCGTC
CAGCACCGCGCGCGCCACTTCACACCAAGGCCACCCCCATATAAATGTCA
TCGTCCGCTGCAGCTGCCGCTGCTGCGAGGATGGACCCGCGCCGCGAGTT
TCTCCGGCAGGTGAATACAAATGTTGgtgcgtcgcacgggaggggtggag
aggttgagatggccagcagagacagaccctcgcgtccattcattcactca
ttgcttgcttggcatctactaccttgacatgtagGCAAATGTGTTGAGTC
CATGGCCCAGCTTATCAAGACGGCCAAGgtgggtggtttggactggagga
tcgggtggaggggtcgatagtgttggaagctgagaaaaatatgtctcagg
catatacttccctccctttttcaacccatgaatccatgattttctccacc
ccatgaatacgcatatgatcagATGAGTTCGGTACGCGAGAATGCATATT
TGGAAGCCAATCGGGTGTCTGTCTTGACGGCCACCATCgtaagtggttgg
gtgtgtggggtgtgttgggcctgttgttcctgttggcctggttatgactt
tagtctaccgcttgacaagccatcgaatttgtttattcactcttatccga
ttcaaaaaaagaagaagcattccgacttcgcagtccagcagatggtcggc
tgccgtgctcacactcctctggctcgttcattacctttcctcaagaacat
gcgctcttactcctccgagacatgtcggcttgtcacttgagcatgactct
accgttaagtgcacaccagctcaactcactttgaattcaaatatattcat
gtcattccgtaacctctgacctgctccgacatatgcagTTGCAAAGCAGT
GAGCAACTCATGACTCAGCTGGAGCAGCTGAAGCGCCTGCACGTGCTACA
AGACTTTGATGCCCTCAATATCGAGTTGGATCAAGCCGTGTGCATCCTAG
AAGCTAGgtaagagaattttagccgtagaattccctggtgtgagtttgag
agggtaaagcagtgaggcttgtataatggcggcgcatgcgactagttttg
gaggcgtaaaggagaatcgtgcgactttttttcgatctttataattgaac
accctgcttagtgacacgattgaatctgggtgtttcattagACAGGATGC
CTTGGGAGAGGAAGTGCTGCAATGGACGGGCGTTGTCAAAGAGGCGGCAG
ATAGGCAGCTGGCGAAAATAGTCGATGGCTGCAGGGAAGAAGGAGGGGAG
GTTGTTTAGGGCAAGAGACAGTGGATGGAGAGGATTCAGTCCCTTCCCAG
GCCTCTGGTGCTACCCGTGCATCCGCAACACCAATGAAACGGACGAAAGT
TTCTCTCAGTGGTCCAAGACGACCCCTCCAGCCCCAAGAACTCCACGACC
AGCTCATAGCCCTCGTCTTCAACATTCTGAAATCACGAGGGGCAGCTATC
ATGATAAAACTCCTACCATAATTCTTTGCGGCCAGGTTCCACGACGAAAA
TTCAACTCAATTTCGTGTTCGTTTGGGCTGGTGAAGGAACGGCTTCAAGT
GTCTGGGGAGGGACAAGGACAACAGCAAACTCTCGTCAAACAGCGGTAGC
AGAGATTCTAGAATGTAGTATCAAGCGATTAAGATAAATATCAGCGAACT
AGACATGTGTAATGAGAAATCCCGAGTTGTTGTCGCTCTTGCCACTGCAA
TGTACGTTGGTCCGAGGTTGGGCGGA
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protein sequence of NO17G01700.1

>NO17G01700.1-protein ID=NO17G01700.1-protein|Name=NO17G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MSSSAAAAAAARMDPRREFLRQVNTNVGKCVESMAQLIKTAKMSSVRENA
YLEANRVSVLTATILQSSEQLMTQLEQLKRLHVLQDFDALNIELDQAVCI
LEARQDALGEEVLQWTGVVKEAADRQLAKIVDGCREEGGEVV*
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Synonyms
Publications