NO17G01670, NO17G01670 (gene) Nannochloropsis oceanica

Overview
NameNO17G01670
Unique NameNO17G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr17:488337..488960 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:488337..488960 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01670.1NO17G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01670.1NO17G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01670 ID=NO17G01670|Name=NO17G01670|organism=Nannochloropsis oceanica|type=gene|length=624bp
ATGGCGGTGTATGCGGGGAAGCAGAAGGTCTTGGATGGCTTTTTTGCGGG
CTTGACGGGGCCAGGGCAGGCGAAGCCCATTATCGCGTATGGAGCAGGGA
TTTTCTCGCACACAGGCAGGGGGGAGGTGAGCGTTCCGGTCAAGAGGGTG
CTCCGGGTGTGCGAAAAGCACTATAGGACAGTGTATGTACCCGAGCACCT
GACGACAAAGGTACACCTCGATTATGGGCAGCGTCTAAACCCAATTGCGA
GAAGGGCAGGAGGAGAAGGAGGGGGAGAAGGAGGAGGAGGAGGAGGAGGA
GGGGGGGTGAAGGAAAAGGAGGGGGAGGAGGCGGCGAAAGACGAGAAGAA
GAAGGTGGAGGAGGAGGAGGAGGTGGTGGAGGGGGAGGAGGCGGCGGAGG
ACGGGAAGAAGAAGGTGGAGGAGGGGGCGGAGGGGGAGCAAGAGGCCAAG
GCAAGAAAGCTGGGGGAGGAACGGAAGTGGGAGGGAGGGGATATGTGGGA
GCCAGTGCCACATCAGTACCAGCACCAACACCTGCAGTGGGAGGAGGGGA
AGGAGGAGGGGAAGGAAGAAGAGGGAAAAGAACCCGGGCTGCGGAAGCAG
CAGCAGCGGCCGGCACACAGCTGA
back to top

protein sequence of NO17G01670.1

>NO17G01670.1-protein ID=NO17G01670.1-protein|Name=NO17G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MAVYAGKQKVLDGFFAGLTGPGQAKPIIAYGAGIFSHTGRGEVSVPVKRV
LRVCEKHYRTVYVPEHLTTKVHLDYGQRLNPIARRAGGEGGGEGGGGGGG
GGVKEKEGEEAAKDEKKKVEEEEEVVEGEEAAEDGKKKVEEGAEGEQEAK
ARKLGEERKWEGGDMWEPVPHQYQHQHLQWEEGKEEGKEEEGKEPGLRKQ
QQRPAHS*
back to top
Synonyms
Publications