NO17G01650, NO17G01650 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G01650 vs. NCBI_GenBank
Match: XP_005856015.1 (pseudouridine synthase [Nannochloropsis gaditana CCMP526] >XP_005856318.1 pseudouridine synthase [Nannochloropsis gaditana CCMP526] >EKU20041.1 pseudouridine synthase [Nannochloropsis gaditana CCMP526] >EKU20342.1 pseudouridine synthase [Nannochloropsis gaditana CCMP526] >EWM24262.1 pseudouridine synthase [Nannochloropsis gaditana]) HSP 1 Score: 306.6 bits (784), Expect = 1.100e-79 Identity = 168/299 (56.19%), Postives = 203/299 (67.89%), Query Frame = 0 Query: 69 GAHLQ-SRPLHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADILVHGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLRHPAYLVGNDNKIYKDRTLGE-----PTKQK---SQRRKMTVHAPLPEMWRARFGDEVARKVEELQRSTGE 359 GAH + R LH LYRD HIIV +K AGILSQ D ++ G ATD L +VRA+IK + GK AYVGLVHRLDRNVTGCMV ALRSKAAARLSYDFKNRLV K+YV MV G L G G+L + LVHG+ NV +V E+A L++KSLG+F P G AQTL+QI+L++GKKHQIR QLSHLGHPIVGD+KY +PT FRDKF+ALHC +L+ RHPS ++I K+ T GE P +K +R+ M +APLPE W+ARFG +V R V EL R G+ Sbjct: 25 GAHSRLDRQLHTLYRDAHIIVISKAAGILSQPDERSIGGATDLLGLVRAYIKKSAGKQNGAYVGLVHRLDRNVTGCMVFALRSKAAARLSYDFKNRLVRKMYVAMVVGTLSGEGLLTNSLVHGRNNVARVMN-RVNESLQPPSVPSNKKLEQAQLYFKSLGTFYHPRGGAQTLLQIQLISGKKHQIRAQLSHLGHPIVGDVKYKAPTHFRDKFMALHCYSLTLRHPS---------QGSRIVKELTSGEGVCGDPKGRKLDHEKRQIMDFYAPLPESWQARFGADVVRCVHELPRDIGD 313
BLAST of NO17G01650 vs. NCBI_GenBank
Match: WP_034448766.1 (RluA family pseudouridine synthase [Butyrivibrio sp. AE2032]) HSP 1 Score: 155.2 bits (391), Expect = 4.200e-34 Identity = 91/220 (41.36%), Postives = 128/220 (58.18%), Query Frame = 0 Query: 77 LHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADILVHGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLR 297 ++VLY DNHIIV K AG+LSQ D A D L++++A+IK+ KPG Y+GLVHRLDR V+G MV A SKAA+RLS ++R V KIY C+V G L G+G L + + ++ T +++ L+YK++ S + TL +++L TG+ HQIR Q++H G+P++GD KY + R K IAL LSF HP R Sbjct: 11 VNVLYEDNHIIVALKPAGVLSQSDGTG---APDMLTVLKAYIKEKYSKPGEVYLGLVHRLDRPVSGVMVFARTSKAASRLSEQIRSRKVEKIYRCVVDGVLEGSGRLENYICKDEKTNTVTVSDTEKPGF-----------KRSYLNYKAICS-----KDGLTLAEVKLGTGRSHQIRAQMAHAGYPLIGDQKYGHADK-RCKDIALDAYRLSFEHPVKR 210
BLAST of NO17G01650 vs. NCBI_GenBank
Match: WP_013110975.1 (RluA family pseudouridine synthase [Planctopirus limnophila] >ADG68544.1 pseudouridine synthase [Planctopirus limnophila DSM 3776]) HSP 1 Score: 151.8 bits (382), Expect = 4.700e-33 Identity = 98/283 (34.63%), Postives = 145/283 (51.24%), Query Frame = 0 Query: 78 HVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLH-GAGMLADILVHGQE-NVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLRHPAYLVGNDNKIYKDRTLGEPTKQKSQRRKMTVHAPLPEMWRARFGDEVARKVEELQRSTGE 359 H+L+ DNH +V K AG+L+ D D + + + +K KPGN YVGLVHRLDR V+G +++A SKAA+RLS F+ R K+Y+ +V G+L+ AG + D L+ QE N T+V A++A L Y+ L + P G +TLV+++ +TG+ HQIR QL+H G I+GD++Y S T K IALH +L+F HP Q++ +T++APLP W+ + K + S E Sbjct: 5 HILFEDNHCLVVEKPAGVLTMGDETGD---ENMVQLAMDDLKIRHQKPGNVYVGLVHRLDRPVSGVLLLAKTSKAASRLSAQFREREPEKVYLAIVEGQLNPAAGEIVDWLIKDQERNHTRVTS------------PQTPGAKQAKLRYRQLETLVTPEG-IRTLVEVQPMTGRSHQIRVQLAHAGASILGDLRYGSKTPL-GKMIALHARSLTFEHP----------------------------VQKQPLTIYAPLPSDWKPFMNPLLWEKFQTAGESAAE 242
BLAST of NO17G01650 vs. NCBI_GenBank
Match: WP_094547622.1 (RNA pseudouridine synthase [Rubricoccus marinus] >OZC02900.1 hypothetical protein BSZ36_07890 [Rubricoccus marinus]) HSP 1 Score: 149.8 bits (377), Expect = 1.800e-32 Identity = 89/219 (40.64%), Postives = 126/219 (57.53%), Query Frame = 0 Query: 79 VLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADIL--VHGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRD-KFIALHCCTLSFRHPS 295 +L+ DNH++V K AG+LSQ D D D + +A +K KPGN +VGLV RLDR +G MV+A SKAA+RL+ F+ R V K+Y+ +V GKL G+G L D L H E T+V A+KA+L +++L + + +TLV++ L TG+ HQ+R QL +GHPIVGD++Y +P D IALH L+ HP+ Sbjct: 5 ILFLDNHLLVVAKPAGMLSQGDSTGD---RDVANWAKAFLKREFNKPGNVFVGLVQRLDRPASGVMVLARTSKAASRLTEQFRKRSVEKVYLALVEGKLEGSGRLEDWLFKTHDTETGTRV----------KRVSSTTSGAKKAVLEWRALATVR-----GRTLVRVVLETGRPHQVRVQLGGIGHPIVGDLRYAAPVPLGDGHSIALHAAHLALDHPT 205
BLAST of NO17G01650 vs. NCBI_GenBank
Match: WP_072713852.1 (RNA pseudouridine synthase [Rhodothermus profundi] >SHK03905.1 ribosomal large subunit pseudouridine synthase D [Rhodothermus profundi]) HSP 1 Score: 148.3 bits (373), Expect = 5.200e-32 Identity = 100/287 (34.84%), Postives = 145/287 (50.52%), Query Frame = 0 Query: 72 LQSRPLHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADILVHGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLRHPAYLVGNDNKIYKDRTLGEPTKQKSQRRKMTVHAPLPEMWRARFGDEVARKVEELQRSTGE 359 LQ L VLY DNH++V NK AG+ SQ DR A LS+ +A IK+ KPGN Y+GLVHRLD V+G MV+A SKAAARL F+ R V KIY+ +V G+L G G+ D + ++++ V+ ++A+L +++L + TLV++ TG+KHQIR QL+ G+P++GD +Y + +ALH LS HP ++R +M AP+P W + F +V R + L+ S E Sbjct: 2 LQVAELPVLYLDNHLLVVNKPAGLRSQGDRSG---APTVLSLGKALIKERFNKPGNVYLGLVHRLDAPVSGVMVLARTSKAAARLMQQFRERTVEKIYLALVEGELEGEGVWEDFIAPARDHMRLVSA-------------DHPWGKRAVLRWEALMT-----RNGLTLVRLIPETGRKHQIRVQLAFRGYPVLGDRRYRARRWLAPGQMALHAWKLSVTHP----------------------------TRRERMQWTAPVPSCWDSAFRLKVDRLLAYLEASGPE 239
BLAST of NO17G01650 vs. NCBI_GenBank
Match: WP_093242230.1 (RluA family pseudouridine synthase [Ruminococcaceae bacterium YAD3003] >SDX89844.1 23S rRNA pseudouridine1911/1915/1917 synthase [Ruminococcaceae bacterium YAD3003]) HSP 1 Score: 147.9 bits (372), Expect = 6.800e-32 Identity = 90/221 (40.72%), Postives = 121/221 (54.75%), Query Frame = 0 Query: 77 LHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADILVHGQ-ENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLR 297 ++VLY DNHIIV K AG+LSQ D A+D L+I++A+IK+ KPG Y+GLVHRLDR V+G MV A SKAA+RLS + + K+Y C+V G L GAG L + + + N+ V L YK + + + TL +I+L TG+ HQIR Q+SH G+P++GD KY K +AL LSF HP R Sbjct: 12 VNVLYEDNHIIVAVKPAGVLSQSD---GSKASDMLTILKAYIKEKYEKPGEVYLGLVHRLDRPVSGVMVFARTSKAASRLSEQIRTNKIEKLYRCVVQGVLEGAGHLENYISKDENRNIATVIDTEKPGFKFCN------------LEYKPIKTV-----DGLTLTEIKLGTGRSHQIRAQMSHFGYPLIGDQKYGKKDNLA-KDVALQSFKLSFEHPVKR 211
BLAST of NO17G01650 vs. NCBI_GenBank
Match: GBD00780.1 (Ribosomal large subunit pseudouridine synthase D [bacterium HR18]) HSP 1 Score: 147.9 bits (372), Expect = 6.800e-32 Identity = 91/227 (40.09%), Postives = 124/227 (54.63%), Query Frame = 0 Query: 72 LQSRPLHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADILVHGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLRHP 299 L+ L VLY DNH++V NK AG+ SQ DR A LS+ +A +K KPGN Y+GLVHRLD V+G MV+A SKAAARL F++R V K Y+ +V G+L G G D + E++ V +A+LH+++L S TL+++ TG+KHQIR QL+ G+PI+GD +Y S F +ALH L HP+ R P Sbjct: 6 LKPEALPVLYYDNHLLVINKPAGLRSQGDRSG---APTVLSLAKAWLKMQCHKPGNVYLGLVHRLDAPVSGVMVLARTSKAAARLMQQFRDRTVQKTYLALVEGELEGGGTWEDYVAPAGESMRLV-------------PESHPWGRRAVLHWQALLS-----RNGLTLLRLVPETGRKHQIRVQLAFRGYPILGDRRYRSRRAFVPHQLALHAWQLQLTHPTQRIP 211
BLAST of NO17G01650 vs. NCBI_GenBank
Match: CCZ55718.1 (ribosomal large subunit pseudouridine synthase family protein [Clostridium sp. CAG:1219]) HSP 1 Score: 147.5 bits (371), Expect = 8.800e-32 Identity = 91/224 (40.62%), Postives = 128/224 (57.14%), Query Frame = 0 Query: 75 RPLHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAG---KLHGAGMLADILV-HGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPS 295 + L +LY DNHIIV K AGI +Q D D D L+I++ ++K+ KPGN Y+GL+HRLDR V+G MV A SKAA+R+S + + VTK Y+ ++ G K G L ++LV + N++KV A++A+L YK L +F + + TLV + L TG+ HQIR Q S++GHP+ GDIKY + IAL LSF HP+ Sbjct: 4 KDLKILYEDNHIIVVVKPAGIPTQADDSND---IDMLNIIKQYLKEKYNKPGNVYLGLLHRLDRMVSGVMVFAKTSKAASRISEYIRQKNVTKKYLAILNGTIKKDEGQHKLVNMLVKDSKNNISKVV------------EKETRGAKEAILTYKVLKNF-EYREKQYTLVDVNLETGRHHQIRAQFSNIGHPLYGDIKYGLDVNKKGHNIALFSYYLSFYHPT 211
BLAST of NO17G01650 vs. NCBI_GenBank
Match: CDE24062.1 (rNA pseudouridine synthase [Clostridium sp. CAG:307]) HSP 1 Score: 147.5 bits (371), Expect = 8.800e-32 Identity = 88/234 (37.61%), Postives = 129/234 (55.13%), Query Frame = 0 Query: 77 LHVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGMLADILVHGQENVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLRHP-AYLVGNDNKIY 310 L V+Y DN +IV K GIL+Q D A+D L++ + +IK+ KPG Y+GLVHRLDRN +G MV A SKAAARLS + TK Y+C+ G L G G + + L + ++ ++A+L Y++L + + G+ TLV I L TG+ HQIR QL++LGHP+ GD+KY + R + AL LSF HP+ + A++ + K++ Sbjct: 2 LKVIYEDNQVIVVYKETGILAQADISG---ASDLLTMTKEYIKEKYNKPGAVYLGLVHRLDRNTSGLMVFARTSKAAARLSEQIRTHSFTKKYLCVCEGHLFGKGRIENHLYYDEKQKKSFV-------------VGKNKGKEAILDYEAL-EYTELDGKEYTLVNINLETGRHHQIRCQLANLGHPLYGDVKYGAHDRV-GNYYALKNYELSFVHPTTKEELAFVYFQNEKVF 217
BLAST of NO17G01650 vs. NCBI_GenBank
Match: WP_068846715.1 (RluA family pseudouridine synthase [Planctopirus sp. JC280] >ODA34221.1 RNA pseudouridine synthase [Planctopirus sp. JC280]) HSP 1 Score: 147.5 bits (371), Expect = 8.800e-32 Identity = 99/283 (34.98%), Postives = 143/283 (50.53%), Query Frame = 0 Query: 78 HVLYRDNHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLVHRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLH-GAGMLADILVHGQE-NVTKVAGXXXXXXXXXXXXXXXXXAEKALLHYKSLGSFQDPGGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIALHCCTLSFRHPSLRHPAYLVGNDNKIYKDRTLGEPTKQKSQRRKMTVHAPLPEMWRARFGDEVARKVEELQRSTGE 359 H+L+ DNH +V K AGIL+ D D + + + +K KPGN YVGLVHRLDR V+G +++A SKAA+RLS F+ R K Y+ +V G+L+ AG L D L+ QE N T+V A++A L Y+ L + P G +TLV+++ +TG+ HQIR QL+H G I+GD++Y S T K IALH +L+F HP Q+ ++ + APLP W+ + +K + S E Sbjct: 5 HILFEDNHCLVVEKPAGILTMGDETGD---ENMVQLAMDDLKIRHQKPGNVYVGLVHRLDRPVSGVLLLAKTSKAASRLSAQFREREPEKTYLAIVEGQLNPAAGELVDWLIKDQERNHTRVTS------------PQTPGAKQARLRYRQLETLVMPEG-TRTLVEVQPMTGRSHQIRVQLAHAGASILGDLRYGSKTPL-GKMIALHARSLTFEHP----------------------------VQKLRLMICAPLPSDWKPFMNPLLWKKFQTAGESAAE 242 The following BLAST results are available for this feature:
BLAST of NO17G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G01650 ID=NO17G01650|Name=NO17G01650|organism=Nannochloropsis oceanica|type=gene|length=1236bpback to top protein sequence of NO17G01650.1 >NO17G01650.1-protein ID=NO17G01650.1-protein|Name=NO17G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bpback to top Synonyms
Publications
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