NO17G01600, NO17G01600 (gene) Nannochloropsis oceanica

Overview
NameNO17G01600
Unique NameNO17G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3219
Alignment locationchr17:470907..474125 -

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Properties
Property NameValue
DescriptionArmadillo-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:470907..474125 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
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BLAST of NO17G01600 vs. NCBI_GenBank
Match: EWM24228.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 3.900e-77
Identity = 204/507 (40.24%), Postives = 274/507 (54.04%), Query Frame = 0 
Query:    6 LVPYLQSTDLHERLYAKQALLVMDNKVLANNMSTLVALLEESDVLSKRCALELLSKLSPISLLTALLGRIISQLDDDDADVRRGCLAVLGRVPSTALNEHAQVLLSCITHKAWPVRVTGLGAFAFLSAPIVQSHLEDVLLISLNDTDSASVRWSALDLLQRKVQQYLVGGAKEGE--DGGRRGVK-----------VNLFKITTTENASNNRYSSMNGSTTNIDNHGHLE----ESERESIEEVILGQFSKVVDCFADADRYIRWKAISVLGHYPAEVVTPELLDSLLEALEHPLPCTREAALFALSRLEGKVVRGRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLPLLHHRPRVVHEVFKRVHDEDLAVRLAALHALQALPTDALLGSA---GTEVEGQRGEWLVAEIETGLRLDKKEGVAGADYEMNAYVQQARGRLLKRLHEISGGNLVGEKVLEEVRQMRQRQEEERAGQQGSWD 493
            L PYLQS++++ERLYAKQALL +D KVL NNMSTLV LL+ S  LSKRCAL LL KLSP+ LLTALLGRI   LDD+DADVRRG +AVL  VP+T L+ +A  LLS + H A  +RVT L A A+LSA   Q HL D+L  +L D +S+ VRW+ALDLLQ+ V ++L+    EGE  DGG    +               +I +TE+   +  +S      +I   G         E   +E+++  Q +K + CF D D+Y+RWKA+SVL  YP+ ++  + L+ LL  L  P P  R AAL ALSRLE K    ++                                                           H   RVV  + KR+ DED  VR+A L AL+ +P D +LG+A   G E EG   + +VA++ + L+            +   YVQQA G++L+ L+E+S G+LV E ++EEV +MR RQEEE  G    WD
Sbjct:   24 LAPYLQSSNIYERLYAKQALLHVDAKVLVNNMSTLVTLLDGSGALSKRCALSLLQKLSPVGLLTALLGRITVHLDDEDADVRRGVVAVLAHVPTTTLDSYADALLSFVFHPAPSIRVTSLSALAYLSATWTQGHLPDILSTALMDLESSDVRWAALDLLQKNVHRFLIEKDCEGEVPDGGGSNFRQTGTVDPVHGQAETAEIKSTEDNGRDSINSWVLKNESILERGLAASDACNGEDGGVEKMLQEQATKAIRCFTDPDKYVRWKAVSVLSTYPSHLLLQDTLEHLLGCLNQPFPFARIAALMALSRLEEKAGHKKRDDMSVEKHTRAGESFLH-----------------------------------------FHGEARVVQAMSKRLWDEDYTVRVACLQALRTVPPD-VLGAALIDGME-EGDGDDCIVAKLASQLKGRNFPPSETDGDDGGHYVQQAAGQILETLYEVSSGSLVTEDMVEEVHRMRLRQEEESRG----WD 483
The following BLAST results are available for this feature:
BLAST of NO17G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24228.13.900e-7740.24Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002943NSK002943Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01600.1NO17G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632460gene_7730Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g44gene6217Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01600.1NO17G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01600 ID=NO17G01600|Name=NO17G01600|organism=Nannochloropsis oceanica|type=gene|length=3219bp
TCAAAGCAATTGTTAGAAAGGAGTTGCCCTCTTCGCTTTCCCTTAACCAA
CGCAATTCAATGAATATAACTAAAGTGAACGACAAGTCAATTTAAACGAA
TCGTGTGATGGACAGGCTTTTTCCGTGCAAAAAAGGAAACCGGTATTTGC
TGGAAATGCACGCACGCAACCACCCACCCCTATGGACAACGCGGCAAGCA
ATCATAATGATCCTTCCAAAATGTCTTTTCTTGTTAAATTCTTCAAACGC
CTAAGACAAGTCTACGGATGCGTGCTGCAAAGCTCGGGGCGATAGTGGTG
CTCACACGGAGTCTCGACATTTGCACAGTGCTGCGATGCCCCGTGTTGTG
GCTCTTGCCCGCATGCCCGCGCATCACGTCGCCATTTCGTAGCAAGCGGA
AGCGCTTTTTGGCCCCTTGGTGGCGCTTGGCCCCGTGCTTCCAGCGCACG
CACAGCGTCGTGGGACTCAGCAGCGCTGGTGGCGACGGGAGGATGGAAGG
ACGGGGTGCAAGCGAAACTACTGCTACTATTCTTGTGCGTGCGTCGGACC
ATGCGCGATGCAGGAGCAACGAAGTCATGGTACGTGTCCTGCCTGTATGT
ATGTGTTGGTGTGGGGATTGGACGTGTTTGAGATGTCACAGCCTGCTGGC
CAAAGGACTTGATGACACAGGTAGAGGGAGCATCGGGAAAACGGATCGCC
ATTTCAGTAGTTCTTACGCTCTCTTTTTGTCCTTGCTAATCCACAAAATA
CAGAGCCAGCGAAACGAGGAGCGACGGGGACAATTCAGGCACTGGCGCGC
AGGAGGAGGCGTCGCGCACCCCAGGCTGCCGCCCACACCGCTCCATCAAC
GGCAGTCGTCTCTCTACGGTCGAGGCGGACGAGCCTCAGCATCATCATGC
CGATCAACGAGTTAGTGCCGTATTTGCAGTCAACAGACTTGCATGAGCGG
CTCTATGCCAAGCAGGCTCTCCTAGTTATGGATAATAAGgtacgcggaag
gcggggagggtctagcctatttcattggtgggggggcgtggcctgtggat
ttcgattccaaggctaggagcatacacaccactctcatcaattcttcaat
tttcacgcacattgtagtctccctgcagctcttcgcccgcgcaaaatctc
attgacatacaacccccccttctctgtcccctctcctttccctctccttt
cccccgccgcagGTGCTCGCCAACAATATGTCGACGCTGGTGGCCCTCCT
GGAAGAATCAGACGTCCTATCAAAGCGCTGTGCTCTGGAGCTCTTGTCAA
AGCTCTCTCCCATCAGCCTGCTTACCGCCCTCCTGGGTCGGATCATATCG
CAACTCGACGACGATGATGCCGACGTACGAAGAGGCTGTCTGGCTGTCCT
AGGTCGCGTCCCATCCACAGCCTTGAACGAGCACGCCCAGGTCTTACTCT
CATGTATTACGCACAAAGCATGGCCTGTCCGAGTGACAGGCTTGGGTGCA
TTTGCCTTTCTGTCGGCCCCAATAGTTCAATCTCACTTGGAGGACGTGTT
ACTCATCTCGCTGAATGACACGGACTCAGCGTCTGTTCGATGGTCAGCGT
TGGATCTGTTGCAGAGGAAGGTACAGCAGTACTTAGTTGGTGGTGCCAAG
GAGGGCGAGGACGGAGGAAGGAGGGGGGTAAAGGTGAACTTGTTCAAGAT
AACCACAACGGAAAATGCCAGTAATAACAGGTACAGCAGTATGAACGGTA
GCACCACAAATATTGATAACCATGGTCACCTGGAGGAGAGTGAGAGGGAG
AGTATTGAAGAGGTTATACTTGGGCAATTTTCTAAGGTCGTCGATTGCTT
CGCGGATGCTGATAGGTATATCAGATGGAAGGCAATCAGTGTGTTGGGGC
ACTACCCAGCCGAGGTCGTCACTCCTGAGCTACTCGATTCGTTGCTTGAG
GCCCTGGAGCATCCTTTGCCTTGTACTCGCGAGGCGGCGTTGTTTGCATT
GTCGCGATTGGAGGGGAAAGTGGTCAGAGGTAGGAAAAATAAGAGAGGAA
AGGAAGAGAAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAAGACGCAGGGGGAGGAGGTGGAGAGGGAGGTTGAGAGGGAGGAAC
GCTTGCCGTTGCTTCATCATCGTCCGCGGGTGGTGCACGAAGTGTTTAAA
CGGGTTCACGATGAGGACTTGGCGGTACGATTGGCCGCTCTTCATGCGCT
GCAGGCGCTGCCGACTGATGCCCTGTTGGGTTCGGCAGGTACAGAGGTGG
AAGGTCAAAGGGGGGAATGGCTGGTAGCAGAAATTGAGACAGGTTTGCGC
TTGGATAAAAAGGAGGGTGTTGCGGGTGCAGATTATGAGATGAATGCGTA
TGTACAGCAGGCGAGAGGACGATTGTTGAAAAGGCTGCATGAGATTTCGG
GAGGGAACTTGGTGGGAGAGAAAGTTCTTGAAGAGGTGAGACAGATGCGG
CAACGGCAGGAGGAGGAGCGCGCGGGACAACAAGGCTCTTGGGATGATGA
CACATATCGATACGATAATGGAGCCAAAGGCGCAAATTGGAGTGCAGTTG
ATGGCTAACATACCTTCCTTACTTTCTCACTTACTTTGACGATATTGGTG
ACAGCGCACTCTACCATTTCATTCCAGTCGTATCCTTGGTTCCTGGATTC
ATTATTTCGATCAGAGGTTATGTGTACATACCTAAAATCATACTGAGGAA
GGAACACGATCTTTGGCATCCACTCAAGAAGCAGAAGGTTTGGACCGCTG
CATGACGGGAGAGCATGAAATAAGAAAATTTAGCCTAAATGTGGGAGTCA
AAAAAATTATCGAGACAATTCACAAACGCACGGTAGCAAGCACAAAAATG
GAATATTACTAGTCGTGTAGACTGAGACTTAATGAGTAAGAAAAGAACGT
GCGTATGTTTTTATTTGATGTGCCATGAGTTAGGATGCACAGCCAAGAAA
CAAGTCAATTTTGGGTGAGGGGGTTGGGTTGGGGTTAAAGCAGCTAGTAT
GACAAATGATCAAGCAAAATTAAATTTATCTGTGTGTATCATATCTTGCT
TTCTCCTGACTCACGAAGCGCTGGAATAAACAAAATTCTAAATCATTCTA
CAACTAAGCACAACCTAGC
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protein sequence of NO17G01600.1

>NO17G01600.1-protein ID=NO17G01600.1-protein|Name=NO17G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MPINELVPYLQSTDLHERLYAKQALLVMDNKVLANNMSTLVALLEESDVL
SKRCALELLSKLSPISLLTALLGRIISQLDDDDADVRRGCLAVLGRVPST
ALNEHAQVLLSCITHKAWPVRVTGLGAFAFLSAPIVQSHLEDVLLISLND
TDSASVRWSALDLLQRKVQQYLVGGAKEGEDGGRRGVKVNLFKITTTENA
SNNRYSSMNGSTTNIDNHGHLEESERESIEEVILGQFSKVVDCFADADRY
IRWKAISVLGHYPAEVVTPELLDSLLEALEHPLPCTREAALFALSRLEGK
VVRGRKNKRGKEEKGEEEEEEEEEEEEEEEKEEEEEEEEEEEEEEKTQGE
EVEREVEREERLPLLHHRPRVVHEVFKRVHDEDLAVRLAALHALQALPTD
ALLGSAGTEVEGQRGEWLVAEIETGLRLDKKEGVAGADYEMNAYVQQARG
RLLKRLHEISGGNLVGEKVLEEVRQMRQRQEEERAGQQGSWDDDTYRYDN
GAKGANWSAVDG*
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Synonyms
Publications