NO17G01450, NO17G01450 (gene) Nannochloropsis oceanica

Overview
NameNO17G01450
Unique NameNO17G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr17:439066..440643 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:439066..440643 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028031DUF4460
Homology
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BLAST of NO17G01450 vs. NCBI_GenBank
Match: EWM24261.1 (hypothetical protein Naga_100020g57 [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 1.100e-49
Identity = 142/337 (42.14%), Postives = 187/337 (55.49%), Query Frame = 0 
Query:    1 MLRRLMRPFVKQIHPDFHHNASAAVKRMNEQSLQKLNSILDTLEHLGRGPPNAQCQQEQQRGLQPPSLEASYELTFHLVPLAKGKGAEKSTSKANTGLPAGSAAAAAHLPPPIFTARLTFPSTTMSRFTREA-PFATATTRSQAFPFSSPDEAAAAPPTPAIPEGIARQLRKLFKGARLPVPRELERPGGGSGQSRKRWGRSRREEMIGGAEVESMVLADLMARDLKVEGPSENQRRVAVNRLLRSGRVLTKGLSGAGEAVALRELEQVLVGVWDRCNLGEISGEIQIVLDAEAEMLHWDVLPDNRG----QLIICPADVKGSRFNLALILRTIGGR 333
            MLRRL+RPFVKQIHPDFH NA  AVKR NEQSLQ+LN ILD LE +GRG  + Q +       Q   LE  YELTFH+V      G  K  +  ++ L +             FTARL FPS+T+S F + A P A+++T++        D+      T  +PE I +QLRKL  GA L +P EL+          + +   R   +I  A  + MVLADLM +DL  EG +      AV  +LRSGR+LTKGL  A E +A++ LE+VL  + +   L EI   IQIVLD E++ L W++L          + +CPAD +  R +LA ILR I  R
Sbjct:    1 MLRRLLRPFVKQIHPDFHQNAPTAVKRTNEQSLQQLNRILDALEAVGRGQLSTQSRHVVSNAFQSHYLEECYELTFHVVRPNSTIGKLKDNTFTSSPLQS-------------FTARLLFPSSTISHFAKTALPNASSSTKTH-------DKV-----TYFLPEEIRQQLRKLLYGAGLTIPNELK----SITAKAQGYDELRPHGLISAAAAKMMVLADLMTQDLHHEGSTTFDSSAAVAHMLRSGRILTKGLVPAEEVLAIQVLEKVLHSILEEVQLEEILTSIQIVLDRESDKLWWEILSSKVSGKCEYIFVCPADSRRVRHSLAFILRLISHR 308
The following BLAST results are available for this feature:
BLAST of NO17G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24261.11.100e-4942.14hypothetical protein Naga_100020g57 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01450.1NO17G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100020g57gene6207Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01450.1NO17G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01450 ID=NO17G01450|Name=NO17G01450|organism=Nannochloropsis oceanica|type=gene|length=1578bp
CAGTCCAGGTCTCTGCCCAAAACAGATTCCGATGCTGCGGCGGCTAATGC
GCCCCTTTGTCAAGCAAATTCACCCGGATTTCCATCACAATgtaagaagg
ggggagggggggagaggaggtcggcgggcaaaaatggggggagcatgtta
atacaggactgacccccacgtttttctatttgaataatttgtctacccaa
cccaatcatccttctacaagGCCTCAGCCGCCGTGAAGCGTATGAACGAA
CAGTCTTTGCAGAAGCTTAACTCCATCCTCGACACGTTGGAGCACTTGGG
CCGAGGACCACCGAACGCGCAATGCCAGCAAGAGCAGCAGCGAGGCCTTC
AACCACCAAGTCTGGAGGCCTCCTATGAGTTGACATTTCACCTCGTGCCC
TTGGCTAAGGGAAAAGGAGCGGAAAAGTCGACAAGTAAGGCAAATACGGG
CCTTCCTGCCGGCTCTGCCGCTGCTGCTGCTCATTTGCCACCCCCCATCT
TCACTGCACGCCTCACATTTCCCTCTACCACAATGTCGCGTTTCACTCGC
GAGGCTCCTTTTGCCACGGCCACAACCAGGTCTCAAGCATTCCCCTTCTC
TTCTCCCGACGAAGCTGCCGCCGCGCCGCCGACCCCGGCAATACCCGAAG
GAATCGCCCGGCAGCTTCGCAAACTTTTTAAAGGGGCTCGTCTGCCTGTG
CCCAGGGAATTGGAAAGACCCGGCGGTGGAAGCGGGCAGTCAAGGAAGCG
TTGGGGAAGATCGAGACGGGAGGAAATGATTGGAGGTGCGGAGGTGGAAA
GTATGGTGTTGGCTGACCTGATGGCGAGAGACCTAAAGGTGGAAGGTCCT
AGTGAGAACCAACGACGGGTTGCGGTCAATCGCTTGTTGCGAAGCGGAAG
AGTGTTGACGAAGGGCTTGTCCGGCGCGGGGGAGGCAGTGGCCTTGCGGG
AGTTGGAACAGGTGCTGGTGGGTGTGTGGGATAGGTGTAATTTGGGGGAG
ATCTCGGGGGAGATTCAGATAGTCCTTGACGCTGAGGCAGAGATGCTTCA
CTGGGACGTCTTACCTGATAATCGTGGGCAATTGATCATCTGTCCTGCGG
ATGTGAAAGGATCACGATTTAATCTTGCGTTGATTTTAAGGACGATCGGT
GGGAGGAGGGGTAAAGTGGGGGAGGAGAGCGCGGGTACAAGTGCGGGAGA
AGGGAGGGAGGGATGGAGGACGAGGGTGCGGGCACCTTCTGGTGAGAAAA
GGGTTCCAGACATTTTGGCGGGAGGGACATAGATGGATAAGTTATGCTGC
AAGGGACTTTGGAATTAAATACGCTTTTGTGTAGAGAATTTTGCCCACTG
GATTGAGAGTGGTGTGTGGTGGTGGTGTGAAGAGTTGGAAATAATATGAG
ATTTTGGTAGAGAACTTGAGTACGACGACGGTGGGATGAAGACATTTGGA
TTCCTCATTTGGTGGTGCTTCCACAAATGTAAGTGTGCATGTCGGTATAT
GCTCTGCGAATTGGATGCGTGTGAAAATACACTCACAGACAGGAAAACAG
AACGAATGACGACGACTTCAAACGACAA
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protein sequence of NO17G01450.1

>NO17G01450.1-protein ID=NO17G01450.1-protein|Name=NO17G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLRRLMRPFVKQIHPDFHHNASAAVKRMNEQSLQKLNSILDTLEHLGRGP
PNAQCQQEQQRGLQPPSLEASYELTFHLVPLAKGKGAEKSTSKANTGLPA
GSAAAAAHLPPPIFTARLTFPSTTMSRFTREAPFATATTRSQAFPFSSPD
EAAAAPPTPAIPEGIARQLRKLFKGARLPVPRELERPGGGSGQSRKRWGR
SRREEMIGGAEVESMVLADLMARDLKVEGPSENQRRVAVNRLLRSGRVLT
KGLSGAGEAVALRELEQVLVGVWDRCNLGEISGEIQIVLDAEAEMLHWDV
LPDNRGQLIICPADVKGSRFNLALILRTIGGRRGKVGEESAGTSAGEGRE
GWRTRVRAPSGEKRVPDILAGGT*
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Synonyms
Publications